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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCBP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
101.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
79.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
69.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
59.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
44.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCBP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.4
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
97.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
87.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
72.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
69.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
66.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
52.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
43.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.4
865
Tumor
1.2
131
Tumor
1.1
313
Tumor
0.9
1013
Tumor
0.9
965
Tumor
0.9
957
Tumor
0.9
523
Tumor
0.9
355
Tumor
0.8
411
Tumor
0.8
983
Tumor
0.8
777
Tumor
0.8
743
Tumor
0.8
331
Tumor
0.7
1031
Tumor
0.7
977
Tumor
0.7
695
Tumor
0.7
967
Tumor
0.7
427
Tumor
0.6
285
Tumor
0.6
567
Tumor
0.6
545
Tumor
0.6
953
Tumor
0.6
491
Tumor
0.6
661
Tumor
0.5
375
Tumor
0.5
663
Tumor
0.5
951
Tumor
0.5
227
Tumor
0.5
277
Tumor
0.5
211
Tumor
0.5
487
Tumor
0.5
473
Tumor
0.5
385
Tumor
0.5
817
Tumor
0.5
221
Tumor
0.5
537
Tumor
0.4
921
Tumor
0.4
483
Tumor
0.4
647
Tumor
0.4
517
Tumor
0.4
493
Tumor
0.4
141
Tumor
0.4
815
Tumor
0.4
161
Tumor
0.4
923
Tumor
0.4
877
Tumor
0.4
737
Tumor
0.4
863
Tumor
0.4
425
Tumor
0.4
724
Normal
0.4
727
Tumor
0.4
465
Tumor
0.4
943
Tumor
0.3
283
Tumor
0.3
535
Tumor
0.3
533
Tumor
0.3
851
Tumor
0.3
515
Tumor
0.3
937
Tumor
0.3
431
Tumor
0.3
447
Tumor
0.3
1021
Tumor
0.3
435
Tumor
0.3
881
Tumor
0.3
391
Tumor
0.3
813
Tumor
0.3
553
Tumor
0.3
147
Tumor
0.3
525
Tumor
0.3
213
Tumor
0.3
271
Tumor
0.3
383
Tumor
0.3
413
Tumor
0.2
357
Tumor
0.2
963
Tumor
0.2
573
Tumor
0.2
367
Tumor
0.2
917
Tumor
0.2
697
Tumor
0.2
257
Tumor
0.2
1025
Tumor
0.2
125
Tumor
0.2
513
Tumor
0.2
461
Tumor
0.2
913
Tumor
0.2
641
Tumor
0.2
814
Normal
0.2
1043
Tumor
0.2
463
Tumor
0.2
883
Tumor
0.2
351
Tumor
0.2
755
Tumor
0.2
1015
Tumor
0.2
135
Tumor
0.2
112
Tumor
0.2
217
Tumor
0.1
861
Tumor
0.1
343
Tumor
0.1
715
Tumor
0.1
873
Tumor
0.1
433
Tumor
0.1
785
Tumor
0.1
123
Tumor
0.1
975
Tumor
0.1
665
Tumor
0.1
467
Tumor
0.1
297
Tumor
0.1
267
Tumor
0.1
393
Tumor
0.1
327
Tumor
0.1
571
Tumor
0.1
536
Normal
0.1
341
Tumor
0.1
191
Tumor
0.1
395
Tumor
0.1
443
Tumor
0.1
721
Tumor
0.1
455
Tumor
0.1
423
Tumor
0.1
557
Tumor
0.1
671
Tumor
0.0
915
Tumor
0.0
492
Normal
0.0
187
Tumor
0.0
527
Tumor
0.0
524
Normal
0.0
563
Tumor
0.0
311
Tumor
0.0
926
Normal
0.0
477
Tumor
0.0
113
Tumor
0.0
342
Normal
0.0
415
Tumor
0.0
1041
Tumor
0.0
358
Normal
0.0
1045
Tumor
0.0
823
Tumor
0.0
912
Normal
0.0
911
Tumor
0.0
538
Normal
0.0
867
Tumor
0.0
685
Tumor
-0.1
445
Tumor
-0.1
713
Tumor
-0.1
344
Normal
-0.1
516
Normal
-0.1
471
Tumor
-0.1
268
Normal
-0.1
554
Normal
-0.1
478
Normal
-0.1
498
Normal
-0.1
918
Normal
-0.1
857
Tumor
-0.1
666
Normal
-0.1
223
Tumor
-0.1
922
Normal
-0.1
741
Tumor
-0.1
916
Normal
-0.1
672
Normal
-0.1
686
Normal
-0.1
352
Normal
-0.1
628
Normal
-0.1
981
Tumor
-0.1
192
Normal
-0.1
481
Tumor
-0.1
137
Tumor
-0.1
171
Tumor
-0.1
745
Tumor
-0.1
924
Normal
-0.1
884
Normal
-0.1
484
Normal
-0.2
966
Normal
-0.2
365
Tumor
-0.2
488
Normal
-0.2
518
Normal
-0.2
882
Normal
-0.2
662
Normal
-0.2
978
Normal
-0.2
494
Normal
-0.2
534
Normal
-0.2
261
Tumor
-0.2
852
Normal
-0.2
1044
Normal
-0.2
955
Tumor
-0.2
142
Normal
-0.2
434
Normal
-0.2
472
Normal
-0.2
878
Normal
-0.2
462
Normal
-0.2
284
Normal
-0.2
1046
Normal
-0.2
546
Normal
-0.2
262
Normal
-0.2
862
Normal
-0.2
361
Tumor
-0.2
232
Normal
-0.2
387
Tumor
-0.2
448
Normal
-0.2
824
Normal
-0.2
212
Normal
-0.2
451
Tumor
-0.2
1014
Normal
-0.2
272
Normal
-0.2
354
Normal
-0.2
195
Tumor
-0.2
528
Normal
-0.2
353
Tumor
-0.3
474
Normal
-0.3
964
Normal
-0.3
412
Normal
-0.3
384
Normal
-0.3
258
Normal
-0.3
228
Normal
-0.3
984
Normal
-0.3
1028
Normal
-0.3
714
Normal
-0.3
572
Normal
-0.3
564
Normal
-0.3
231
Tumor
-0.3
696
Normal
-0.3
127
Tumor
-0.3
426
Normal
-0.3
558
Normal
-0.3
185
Tumor
-0.3
866
Normal
-0.3
925
Tumor
-0.3
874
Normal
-0.3
868
Normal
-0.3
914
Normal
-0.3
615
Tumor
-0.3
864
Normal
-0.3
858
Normal
-0.3
635
Tumor
-0.3
466
Normal
-0.3
218
Normal
-0.3
574
Normal
-0.3
648
Normal
-0.3
172
Normal
-0.3
514
Normal
-0.3
363
Tumor
-0.3
368
Normal
-0.3
188
Normal
-0.3
424
Normal
-0.3
224
Normal
-0.3
386
Normal
-0.3
145
Tumor
-0.3
526
Normal
-0.3
968
Normal
-0.3
444
Normal
-0.3
482
Normal
-0.4
698
Normal
-0.4
456
Normal
-0.4
362
Normal
-0.4
954
Normal
-0.4
196
Normal
-0.4
636
Normal
-0.4
738
Normal
-0.4
938
Normal
-0.4
716
Normal
-0.4
214
Normal
-0.4
1027
Tumor
-0.4
818
Normal
-0.4
388
Normal
-0.4
746
Normal
-0.4
778
Normal
-0.4
956
Normal
-0.4
162
Normal
-0.4
421
Tumor
-0.4
148
Normal
-0.4
627
Tumor
-0.4
816
Normal
-0.4
958
Normal
-0.4
364
Normal
-0.4
138
Normal
-0.4
356
Normal
-0.4
952
Normal
-0.4
722
Normal
-0.4
616
Normal
-0.4
366
Normal
-0.4
328
Normal
-0.4
618
Normal
-0.4
1026
Normal
-0.4
464
Normal
-0.4
1032
Normal
-0.4
664
Normal
-0.4
376
Normal
-0.4
428
Normal
-0.4
568
Normal
-0.4
222
Normal
-0.4
976
Normal
-0.4
416
Normal
-0.4
1042
Normal
-0.4
723
Tumor
-0.4
728
Normal
-0.4
286
Normal
-0.4
132
Normal
-0.4
742
Normal
-0.4
744
Normal
-0.4
312
Normal
-0.4
146
Normal
-0.5
128
Normal
-0.5
414
Normal
-0.5
944
Normal
-0.5
756
Normal
-0.5
642
Normal
-0.5
436
Normal
-0.5
396
Normal
-0.5
136
Normal
-0.5
298
Normal
-0.5
1016
Normal
-0.5
422
Normal
-0.5
124
Normal
-0.5
982
Normal
-0.5
126
Normal
-0.5
314
Normal
-0.5
468
Normal
-0.5
1022
Normal
-0.5
392
Normal
-0.5
394
Normal
-0.5
114
Normal
-0.5
432
Normal
-0.5
332
Normal
-0.5
617
Tumor
-0.5
452
Normal
-0.5
786
Normal
-0.6
186
Normal
-0.6
278
Normal
-0.6
111
Normal
-0.6
446
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
