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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TFG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
267.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
165.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
154.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
148.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
148.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
147.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
144.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
141.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
138.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
138.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
135.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
135.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
135.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
134.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
134.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
131.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
131.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
131.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
131.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
129.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
128.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
127.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
123.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
122.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
122.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
122.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
121.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
121.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
118.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
118.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
117.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
116.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
116.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
116.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
114.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
114.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
114.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
112.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
112.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
112.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
111.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
110.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
110.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
109.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
108.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
107.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
107.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
107.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
106.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
105.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
105.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
104.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
104.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
103.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
103.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
103.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
103.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
103.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
102.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
102.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
101.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
99.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
99.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
98.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
97.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
96.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
96.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
95.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
95.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
95.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
94.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
94.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
94.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
94.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
94.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
94.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
93.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
93.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
93.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
92.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
92.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
92.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
91.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
91.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
91.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
90.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
90.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
90.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
89.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
89.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
88.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
88.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
88.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
87.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
87.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
87.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
86.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
86.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
85.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
85.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
85.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
85.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
85.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
84.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
84.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
84.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
84.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
84.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
84.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
83.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
83.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
83.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
83.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
83.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
83.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
83.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
83.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
82.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
82.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
82.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
82.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
81.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
81.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
81.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
81.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
80.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
80.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
80.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
80.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
80.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
80.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
80.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
80.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
79.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
79.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
79.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
78.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
78.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
77.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
77.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
77.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
76.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
76.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
76.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
76.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
75.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
75.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
75.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
75.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
75.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
74.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
74.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
74.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
74.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
74.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
74.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
73.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
73.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
73.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
73.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
73.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
72.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
72.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
72.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
72.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
72.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
72.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
71.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
71.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
71.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
71.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
71.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
71.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
70.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
70.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
70.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
69.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
69.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
69.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
69.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
69.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
69.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
68.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
68.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
68.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
68.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
68.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
68.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
67.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
67.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
67.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
66.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
66.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
66.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
66.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
66.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
66.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
65.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
65.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
65.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
65.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
65.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
65.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
65.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
64.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
64.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
64.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
64.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
64.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
63.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
63.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
63.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
62.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
62.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
62.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
62.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
61.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
61.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
61.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
61.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
61.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
61.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
60.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
59.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
59.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
58.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
58.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
57.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
57.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
57.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
57.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
57.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
57.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
56.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
56.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
56.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
56.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
56.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
55.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
55.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
55.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
55.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
55.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
54.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
54.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
54.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
53.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
53.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
53.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
52.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
52.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
52.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
52.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
52.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
51.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
51.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
50.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
50.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
50.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
50.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
49.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
49.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
49.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
49.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
48.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
48.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
48.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
48.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
44.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
43.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
43.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
41.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
40.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
40.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
35.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
35.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
32.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TFG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
92.3
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
244.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
194.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
168.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
168.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
161.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
157.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
156.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
154.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
153.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
142.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
142.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
141.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
140.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
139.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
135.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
134.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
131.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
129.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
128.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
128.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
127.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
126.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
126.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
125.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
124.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
124.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
124.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
122.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
120.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
120.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
119.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
119.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
119.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
117.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
117.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
116.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
116.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
116.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
115.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
114.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
114.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
114.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
113.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
112.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
111.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
110.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
109.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
109.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
109.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
109.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
109.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
109.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
108.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
108.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
107.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
107.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
106.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
106.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
105.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
105.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
104.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
104.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
104.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
104.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
103.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
103.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
103.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
103.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
103.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
103.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
102.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
102.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
102.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
101.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
100.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
100.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
99.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
99.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
99.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
98.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
98.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
97.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
97.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
96.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
96.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
96.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
96.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
95.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
95.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
95.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
94.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
94.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
94.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
93.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
92.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
92.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
92.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
92.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
92.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
91.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
91.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
91.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
91.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
90.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
90.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
90.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
90.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
89.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
89.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
89.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
89.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
89.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
89.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
88.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
88.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
88.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
87.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
87.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
87.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
87.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
87.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
87.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
86.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
85.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
85.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
85.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
85.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
85.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
84.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
84.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
84.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
84.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
84.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
83.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
83.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
83.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
83.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
83.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
83.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
83.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
82.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
82.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
81.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
81.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
81.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
81.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
81.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
80.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
80.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
79.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
79.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
79.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
79.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
78.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
78.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
78.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
77.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
77.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
76.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
75.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
75.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
74.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
74.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
74.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
74.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
74.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
74.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
73.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
73.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
73.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
72.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
72.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
72.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
72.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
72.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
71.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
71.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
71.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
71.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
71.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
70.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
70.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
69.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
69.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
69.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
69.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
68.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
68.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
68.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
67.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
66.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
66.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
65.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
65.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
65.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
64.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
64.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
64.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
64.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
64.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
64.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
62.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
60.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
60.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
60.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
59.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
58.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
58.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
58.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
56.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
51.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
50.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
49.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
47.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
39.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
38.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.1
937
Tumor
0.7
865
Tumor
0.6
477
Tumor
0.5
227
Tumor
0.5
327
Tumor
0.5
921
Tumor
0.5
925
Tumor
0.5
341
Tumor
0.5
913
Tumor
0.5
951
Tumor
0.5
745
Tumor
0.5
615
Tumor
0.5
137
Tumor
0.5
533
Tumor
0.5
481
Tumor
0.4
1041
Tumor
0.4
915
Tumor
0.4
1045
Tumor
0.4
123
Tumor
0.4
513
Tumor
0.4
777
Tumor
0.4
515
Tumor
0.3
755
Tumor
0.3
868
Normal
0.3
695
Tumor
0.3
534
Normal
0.3
1031
Tumor
0.3
517
Tumor
0.3
944
Normal
0.3
443
Tumor
0.3
365
Tumor
0.3
863
Tumor
0.3
977
Tumor
0.3
528
Normal
0.3
955
Tumor
0.3
727
Tumor
0.3
981
Tumor
0.3
714
Normal
0.3
353
Tumor
0.3
171
Tumor
0.3
911
Tumor
0.3
1015
Tumor
0.3
221
Tumor
0.3
363
Tumor
0.2
435
Tumor
0.2
554
Normal
0.2
964
Normal
0.2
526
Normal
0.2
1028
Normal
0.2
954
Normal
0.2
416
Normal
0.2
864
Normal
0.2
474
Normal
0.2
1021
Tumor
0.2
433
Tumor
0.2
472
Normal
0.2
786
Normal
0.2
518
Normal
0.2
922
Normal
0.2
482
Normal
0.2
462
Normal
0.2
553
Tumor
0.2
918
Normal
0.2
471
Tumor
0.2
1032
Normal
0.2
696
Normal
0.2
436
Normal
0.2
356
Normal
0.2
127
Tumor
0.2
493
Tumor
0.2
187
Tumor
0.2
465
Tumor
0.2
756
Normal
0.2
817
Tumor
0.2
473
Tumor
0.2
976
Normal
0.2
746
Normal
0.2
132
Normal
0.1
1046
Normal
0.1
546
Normal
0.1
464
Normal
0.1
912
Normal
0.1
1025
Tumor
0.1
1042
Normal
0.1
145
Tumor
0.1
824
Normal
0.1
484
Normal
0.1
862
Normal
0.1
647
Tumor
0.1
648
Normal
0.1
968
Normal
0.1
1016
Normal
0.1
483
Tumor
0.1
952
Normal
0.1
412
Normal
0.1
938
Normal
0.1
286
Normal
0.1
815
Tumor
0.1
883
Tumor
0.1
737
Tumor
0.1
428
Normal
0.1
956
Normal
0.1
738
Normal
0.1
461
Tumor
0.1
641
Tumor
0.1
958
Normal
0.1
686
Normal
0.1
514
Normal
0.1
415
Tumor
0.1
195
Tumor
0.1
421
Tumor
0.1
851
Tumor
0.1
728
Normal
0.1
395
Tumor
0.1
665
Tumor
0.1
722
Normal
0.1
172
Normal
0.1
926
Normal
0.1
432
Normal
0.1
278
Normal
0.1
884
Normal
0.1
411
Tumor
0.1
148
Normal
0.1
284
Normal
0.1
617
Tumor
0.1
413
Tumor
0.1
1026
Normal
0.1
212
Normal
0.1
494
Normal
0.1
567
Tumor
0.1
516
Normal
0.1
685
Tumor
0.1
131
Tumor
0.1
558
Normal
0.1
525
Tumor
0.1
721
Tumor
0.1
1022
Normal
0.1
425
Tumor
0.1
424
Normal
0.0
627
Tumor
0.0
916
Normal
0.0
618
Normal
0.0
228
Normal
0.0
537
Tumor
0.0
1014
Normal
0.0
162
Normal
0.0
741
Tumor
0.0
111
Normal
0.0
446
Normal
0.0
984
Normal
0.0
451
Tumor
0.0
328
Normal
0.0
368
Normal
0.0
914
Normal
0.0
261
Tumor
0.0
878
Normal
0.0
1043
Tumor
0.0
452
Normal
0.0
414
Normal
0.0
874
Normal
0.0
858
Normal
0.0
362
Normal
0.0
497
Tumor
0.0
867
Tumor
0.0
222
Normal
0.0
426
Normal
0.0
866
Normal
0.0
923
Tumor
0.0
716
Normal
0.0
136
Normal
0.0
882
Normal
0.0
628
Normal
0.0
223
Tumor
0.0
431
Tumor
0.0
723
Tumor
0.0
568
Normal
0.0
642
Normal
0.0
468
Normal
0.0
873
Tumor
0.0
388
Normal
0.0
364
Normal
0.0
138
Normal
0.0
564
Normal
0.0
141
Tumor
0.0
214
Normal
0.0
358
Normal
0.0
966
Normal
0.0
361
Tumor
0.0
924
Normal
0.0
456
Normal
0.0
574
Normal
0.0
852
Normal
0.0
217
Tumor
0.0
463
Tumor
0.0
391
Tumor
0.0
538
Normal
0.0
467
Tumor
0.0
488
Normal
0.0
147
Tumor
0.0
965
Tumor
0.0
285
Tumor
0.0
778
Normal
0.0
978
Normal
0.0
664
Normal
0.0
257
Tumor
0.0
545
Tumor
0.0
466
Normal
0.0
983
Tumor
0.0
963
Tumor
-0.1
114
Normal
-0.1
396
Normal
-0.1
185
Tumor
-0.1
572
Normal
-0.1
523
Tumor
-0.1
271
Tumor
-0.1
498
Normal
-0.1
232
Normal
-0.1
953
Tumor
-0.1
422
Normal
-0.1
982
Normal
-0.1
258
Normal
-0.1
312
Normal
-0.1
311
Tumor
-0.1
196
Normal
-0.1
478
Normal
-0.1
975
Tumor
-0.1
314
Normal
-0.1
354
Normal
-0.1
298
Normal
-0.1
662
Normal
-0.1
715
Tumor
-0.1
742
Normal
-0.1
128
Normal
-0.1
444
Normal
-0.1
113
Tumor
-0.1
392
Normal
-0.1
524
Normal
-0.1
394
Normal
-0.1
112
Tumor
-0.1
666
Normal
-0.1
816
Normal
-0.1
616
Normal
-0.1
218
Normal
-0.1
861
Tumor
-0.1
352
Normal
-0.1
563
Tumor
-0.1
492
Normal
-0.1
698
Normal
-0.1
272
Normal
-0.1
366
Normal
-0.1
448
Normal
-0.1
268
Normal
-0.1
344
Normal
-0.1
423
Tumor
-0.1
535
Tumor
-0.1
857
Tumor
-0.1
785
Tumor
-0.1
571
Tumor
-0.1
1013
Tumor
-0.1
126
Normal
-0.1
376
Normal
-0.1
1044
Normal
-0.1
957
Tumor
-0.1
536
Normal
-0.1
724
Normal
-0.1
818
Normal
-0.2
231
Tumor
-0.2
161
Tumor
-0.2
188
Normal
-0.2
142
Normal
-0.2
384
Normal
-0.2
744
Normal
-0.2
186
Normal
-0.2
387
Tumor
-0.2
455
Tumor
-0.2
881
Tumor
-0.2
527
Tumor
-0.2
943
Tumor
-0.2
224
Normal
-0.2
573
Tumor
-0.2
917
Tumor
-0.2
331
Tumor
-0.2
877
Tumor
-0.2
445
Tumor
-0.2
813
Tumor
-0.2
124
Normal
-0.2
191
Tumor
-0.2
375
Tumor
-0.2
386
Normal
-0.2
427
Tumor
-0.2
277
Tumor
-0.2
713
Tumor
-0.2
663
Tumor
-0.2
332
Normal
-0.2
636
Normal
-0.2
262
Normal
-0.2
357
Tumor
-0.2
814
Normal
-0.2
146
Normal
-0.2
823
Tumor
-0.3
487
Tumor
-0.3
355
Tumor
-0.3
283
Tumor
-0.3
297
Tumor
-0.3
342
Normal
-0.3
447
Tumor
-0.3
351
Tumor
-0.3
383
Tumor
-0.3
672
Normal
-0.3
967
Tumor
-0.3
192
Normal
-0.3
434
Normal
-0.3
743
Tumor
-0.3
125
Tumor
-0.3
367
Tumor
-0.3
213
Tumor
-0.4
671
Tumor
-0.4
697
Tumor
-0.4
393
Tumor
-0.4
635
Tumor
-0.4
385
Tumor
-0.4
135
Tumor
-0.4
491
Tumor
-0.5
211
Tumor
-0.5
313
Tumor
-0.5
267
Tumor
-0.5
557
Tumor
-0.6
661
Tumor
-0.6
343
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
