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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCCB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
71.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
406.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
225.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
208.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
184.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
177.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
176.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
175.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
173.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
172.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
172.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
172.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
161.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
147.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
143.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
140.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
138.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
137.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
134.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
134.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
133.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
128.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
127.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
126.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
126.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
122.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
122.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
122.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
121.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
121.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
119.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
117.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
117.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
116.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
115.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
114.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
114.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
113.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
113.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
112.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
110.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
110.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
109.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
109.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
109.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
108.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
108.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
107.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
107.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
107.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
106.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
106.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
106.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
106.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
105.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
105.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
105.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
105.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
105.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
103.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
103.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
102.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
101.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
101.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
101.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
100.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
100.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
100.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
100.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
99.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
99.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
98.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
98.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
95.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
95.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
94.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
94.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
94.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
94.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
94.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
94.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
93.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
93.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
92.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
92.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
91.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
91.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
90.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
89.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
88.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
88.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
86.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
86.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
86.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
86.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
86.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
86.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
86.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
85.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
85.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
85.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
84.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
84.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
84.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
84.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
83.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
83.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
83.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
83.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
82.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
82.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
82.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
81.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
81.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
81.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
80.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
80.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
79.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
79.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
79.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
79.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
79.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
78.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
78.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
78.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
78.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
78.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
77.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
77.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
76.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
76.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
76.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
75.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
75.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
74.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
73.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
73.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
73.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
73.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
73.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
72.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
71.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
71.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
71.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
70.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
70.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
70.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
69.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
69.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
69.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
69.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
68.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
68.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
68.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
68.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
68.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
68.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
67.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
67.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
67.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
65.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
65.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
65.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
64.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
64.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
64.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
64.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
64.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
64.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
64.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
63.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
63.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
63.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
63.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
63.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
62.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
62.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
62.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
61.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
61.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
61.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
61.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
60.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
60.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
60.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
59.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
59.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
57.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
56.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
55.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
55.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
55.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
55.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
55.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
55.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
55.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
54.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
53.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
53.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
52.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
52.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
52.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
52.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
51.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
51.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
51.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
51.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
50.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
49.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
47.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
47.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
47.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
47.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
47.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
46.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
45.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
44.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
41.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
41.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
40.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
32.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCCB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.6
Number of samples
231
Samples
Sample
Description
TPM
DO45169
0 years, male, NA, stage:3, alive, 1350 days
156.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
151.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
147.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
121.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
119.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
119.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
110.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
109.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
104.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
103.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
100.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
98.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
97.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
96.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
96.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
95.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
94.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
92.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
91.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
90.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
90.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
88.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
87.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
87.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
86.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
85.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
85.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
84.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
82.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
82.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
81.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
81.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
81.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
81.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
78.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
78.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
78.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
77.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
75.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
74.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
74.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
73.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
73.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
73.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
72.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
72.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
71.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
69.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
69.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
69.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
69.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
69.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
69.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
67.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
67.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
67.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
67.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
66.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
65.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
64.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
63.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
63.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
62.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
62.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
60.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
60.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
59.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
59.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
59.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
59.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
59.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
59.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
59.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
59.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
58.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
58.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
57.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
56.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
56.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
55.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
54.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
53.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
53.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
53.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
53.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
52.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
51.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
51.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
49.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
49.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
46.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
45.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
45.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
45.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
44.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
44.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
43.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
40.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
135
Tumor
1.5
487
Tumor
1.1
1041
Tumor
0.9
698
Normal
0.7
695
Tumor
0.7
218
Normal
0.7
128
Normal
0.7
172
Normal
0.7
1027
Tumor
0.7
342
Normal
0.7
636
Normal
0.7
452
Normal
0.6
554
Normal
0.6
571
Tumor
0.6
1022
Normal
0.6
568
Normal
0.6
924
Normal
0.6
462
Normal
0.6
723
Tumor
0.6
332
Normal
0.6
922
Normal
0.6
744
Normal
0.6
513
Tumor
0.6
878
Normal
0.6
298
Normal
0.6
534
Normal
0.6
558
Normal
0.5
132
Normal
0.5
944
Normal
0.5
1032
Normal
0.5
468
Normal
0.5
526
Normal
0.5
186
Normal
0.5
863
Tumor
0.5
358
Normal
0.5
356
Normal
0.5
528
Normal
0.5
124
Normal
0.5
954
Normal
0.5
738
Normal
0.5
756
Normal
0.5
964
Normal
0.5
686
Normal
0.5
376
Normal
0.5
873
Tumor
0.5
412
Normal
0.5
538
Normal
0.5
414
Normal
0.5
515
Tumor
0.5
546
Normal
0.5
955
Tumor
0.5
352
Normal
0.5
968
Normal
0.5
392
Normal
0.5
448
Normal
0.5
394
Normal
0.5
436
Normal
0.4
1026
Normal
0.4
818
Normal
0.4
488
Normal
0.4
112
Tumor
0.4
982
Normal
0.4
518
Normal
0.4
915
Tumor
0.4
344
Normal
0.4
148
Normal
0.4
1028
Normal
0.4
868
Normal
0.4
1016
Normal
0.4
564
Normal
0.4
618
Normal
0.4
862
Normal
0.4
966
Normal
0.4
746
Normal
0.4
778
Normal
0.4
196
Normal
0.4
222
Normal
0.4
635
Tumor
0.4
1046
Normal
0.4
742
Normal
0.4
466
Normal
0.4
214
Normal
0.4
914
Normal
0.4
952
Normal
0.4
864
Normal
0.4
1014
Normal
0.4
616
Normal
0.4
113
Tumor
0.4
278
Normal
0.4
482
Normal
0.4
572
Normal
0.4
714
Normal
0.4
145
Tumor
0.3
478
Normal
0.3
516
Normal
0.3
664
Normal
0.3
388
Normal
0.3
286
Normal
0.3
428
Normal
0.3
111
Normal
0.3
648
Normal
0.3
138
Normal
0.3
912
Normal
0.3
918
Normal
0.3
852
Normal
0.3
162
Normal
0.3
1043
Tumor
0.3
882
Normal
0.3
258
Normal
0.3
465
Tumor
0.3
786
Normal
0.3
494
Normal
0.3
232
Normal
0.3
262
Normal
0.3
981
Tumor
0.3
976
Normal
0.3
114
Normal
0.3
464
Normal
0.3
366
Normal
0.3
446
Normal
0.3
142
Normal
0.3
136
Normal
0.3
472
Normal
0.3
824
Normal
0.3
284
Normal
0.3
755
Tumor
0.3
728
Normal
0.3
484
Normal
0.3
474
Normal
0.3
816
Normal
0.3
926
Normal
0.3
228
Normal
0.3
514
Normal
0.3
432
Normal
0.3
416
Normal
0.2
261
Tumor
0.2
984
Normal
0.2
716
Normal
0.2
666
Normal
0.2
1044
Normal
0.2
423
Tumor
0.2
858
Normal
0.2
662
Normal
0.2
146
Normal
0.2
426
Normal
0.2
884
Normal
0.2
524
Normal
0.2
615
Tumor
0.2
422
Normal
0.2
938
Normal
0.2
328
Normal
0.2
314
Normal
0.2
365
Tumor
0.2
642
Normal
0.2
672
Normal
0.2
696
Normal
0.2
212
Normal
0.2
456
Normal
0.2
386
Normal
0.2
628
Normal
0.2
866
Normal
0.2
354
Normal
0.2
916
Normal
0.2
137
Tumor
0.2
396
Normal
0.2
424
Normal
0.2
574
Normal
0.2
434
Normal
0.2
978
Normal
0.2
874
Normal
0.2
364
Normal
0.2
1042
Normal
0.2
956
Normal
0.1
224
Normal
0.1
227
Tumor
0.1
362
Normal
0.1
272
Normal
0.1
268
Normal
0.1
722
Normal
0.1
384
Normal
0.1
368
Normal
0.1
411
Tumor
0.1
267
Tumor
0.1
492
Normal
0.1
187
Tumor
0.1
191
Tumor
0.1
1045
Tumor
0.0
126
Normal
0.0
867
Tumor
0.0
443
Tumor
0.0
1015
Tumor
0.0
958
Normal
0.0
537
Tumor
0.0
127
Tumor
0.0
361
Tumor
0.0
663
Tumor
0.0
536
Normal
0.0
188
Normal
0.0
911
Tumor
0.0
445
Tumor
0.0
498
Normal
0.0
444
Normal
-0.1
415
Tumor
-0.1
312
Normal
-0.1
721
Tumor
-0.1
123
Tumor
-0.1
777
Tumor
-0.1
195
Tumor
-0.1
217
Tumor
-0.1
883
Tumor
-0.1
553
Tumor
-0.1
297
Tumor
-0.1
523
Tumor
-0.1
745
Tumor
-0.1
481
Tumor
-0.2
617
Tumor
-0.2
421
Tumor
-0.2
713
Tumor
-0.2
141
Tumor
-0.2
567
Tumor
-0.2
451
Tumor
-0.2
257
Tumor
-0.2
557
Tumor
-0.2
563
Tumor
-0.2
741
Tumor
-0.2
737
Tumor
-0.2
192
Normal
-0.3
461
Tumor
-0.3
435
Tumor
-0.3
491
Tumor
-0.3
393
Tumor
-0.3
823
Tumor
-0.3
477
Tumor
-0.3
473
Tumor
-0.3
957
Tumor
-0.3
1025
Tumor
-0.3
467
Tumor
-0.3
431
Tumor
-0.3
851
Tumor
-0.3
925
Tumor
-0.3
877
Tumor
-0.4
953
Tumor
-0.4
483
Tumor
-0.4
517
Tumor
-0.4
313
Tumor
-0.4
785
Tumor
-0.4
355
Tumor
-0.4
455
Tumor
-0.4
493
Tumor
-0.4
433
Tumor
-0.4
447
Tumor
-0.4
353
Tumor
-0.4
185
Tumor
-0.4
357
Tumor
-0.4
277
Tumor
-0.5
963
Tumor
-0.5
231
Tumor
-0.5
857
Tumor
-0.5
223
Tumor
-0.5
497
Tumor
-0.5
375
Tumor
-0.5
363
Tumor
-0.5
685
Tumor
-0.5
715
Tumor
-0.5
327
Tumor
-0.6
865
Tumor
-0.6
161
Tumor
-0.6
697
Tumor
-0.6
383
Tumor
-0.6
913
Tumor
-0.6
814
Normal
-0.6
937
Tumor
-0.7
943
Tumor
-0.7
1031
Tumor
-0.7
977
Tumor
-0.7
921
Tumor
-0.7
641
Tumor
-0.7
727
Tumor
-0.7
125
Tumor
-0.7
813
Tumor
-0.7
967
Tumor
-0.8
221
Tumor
-0.8
535
Tumor
-0.8
665
Tumor
-0.8
861
Tumor
-0.8
573
Tumor
-0.9
427
Tumor
-0.9
743
Tumor
-0.9
917
Tumor
-0.9
131
Tumor
-0.9
271
Tumor
-0.9
923
Tumor
-1.0
1013
Tumor
-1.0
975
Tumor
-1.0
533
Tumor
-1.0
951
Tumor
-1.0
525
Tumor
-1.0
881
Tumor
-1.0
1021
Tumor
-1.0
341
Tumor
-1.1
213
Tumor
-1.1
527
Tumor
-1.1
647
Tumor
-1.1
331
Tumor
-1.1
983
Tumor
-1.1
671
Tumor
-1.1
387
Tumor
-1.1
367
Tumor
-1.1
425
Tumor
-1.1
471
Tumor
-1.1
545
Tumor
-1.2
391
Tumor
-1.2
147
Tumor
-1.2
311
Tumor
-1.2
395
Tumor
-1.2
171
Tumor
-1.3
413
Tumor
-1.3
815
Tumor
-1.3
965
Tumor
-1.3
463
Tumor
-1.3
351
Tumor
-1.4
285
Tumor
-1.5
724
Normal
-1.6
211
Tumor
-1.6
385
Tumor
-1.7
343
Tumor
-1.8
817
Tumor
-1.8
283
Tumor
-1.9
661
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
