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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HGD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
251.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1247.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1225.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1139.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1092.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1049.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1001.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
961.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
919.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
906.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
765.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
751.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
748.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
744.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
722.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
710.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
697.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
688.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
671.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
668.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
629.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
618.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
617.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
594.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
593.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
580.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
575.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
571.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
569.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
565.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
554.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
551.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
541.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
527.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
522.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
516.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
515.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
514.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
508.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
502.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
501.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
500.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
497.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
494.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
490.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
484.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
484.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
484.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
481.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
479.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
479.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
475.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
458.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
458.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
457.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
456.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
455.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
453.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
450.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
446.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
445.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
444.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
443.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
438.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
437.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
434.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
426.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
424.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
419.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
408.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
407.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
400.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
398.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
397.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
384.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
384.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
380.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
376.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
374.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
374.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
374.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
373.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
373.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
372.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
359.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
355.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
354.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
353.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
352.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
351.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
350.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
348.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
348.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
348.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
346.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
345.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
345.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
343.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
338.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
335.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
335.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
332.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
332.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
330.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
327.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
326.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
323.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
321.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
318.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
316.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
313.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
307.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
306.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
301.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
297.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
295.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
294.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
290.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
287.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
285.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
283.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
282.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
281.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
281.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
279.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
276.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
274.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
274.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
272.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
272.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
272.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
267.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
265.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
261.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
258.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
258.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
254.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
254.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
253.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
252.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
252.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
250.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
248.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
246.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
244.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
244.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
244.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
241.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
237.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
236.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
233.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
231.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
230.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
224.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
224.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
223.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
223.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
216.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
214.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
213.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
212.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
212.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
210.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
204.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
204.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
200.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
198.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
198.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
197.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
196.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
196.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
196.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
194.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
193.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
189.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
189.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
187.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
187.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
186.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
185.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
185.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
185.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
184.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
181.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
180.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
178.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
177.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
176.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
173.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
173.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
172.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
170.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
170.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
166.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
166.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
165.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
164.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
164.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
163.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
163.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
160.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
159.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
159.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
158.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
154.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
153.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
153.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
153.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
152.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
150.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
150.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
150.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
150.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
149.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
146.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
146.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
146.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
146.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
145.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
144.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
143.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
143.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
143.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
140.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
139.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
139.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
137.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
137.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
136.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
135.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
135.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
133.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
133.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
132.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
132.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
131.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
130.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
127.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
127.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
126.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
126.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
125.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
123.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
123.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
122.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
121.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
120.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
120.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
118.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
118.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
117.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
115.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
114.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
114.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
111.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
111.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
110.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
109.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
109.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
106.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
106.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
105.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
105.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
105.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
105.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
105.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
102.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
101.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
100.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
99.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
98.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
98.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
95.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
95.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
95.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
94.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
93.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
93.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
92.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
92.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
91.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
91.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
90.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
90.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
89.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
88.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
85.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
85.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
84.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
84.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
81.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
80.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
80.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
80.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
77.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
76.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
76.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
74.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
74.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
73.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
73.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
72.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
71.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
70.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
70.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
70.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
68.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
65.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
65.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
61.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
61.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
58.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
57.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
57.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
56.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
54.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
53.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
53.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
52.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
49.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
48.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
47.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
46.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HGD is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
246.4
Number of samples
231
Samples
Sample
Description
TPM
DO45133
0 years, male, NA, stage:3, dead, 660 days
1422.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
1244.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
1084.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
1023.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
1007.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
979.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
894.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
831.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
810.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
795.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
717.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
695.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
673.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
664.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
660.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
633.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
617.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
600.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
595.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
592.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
583.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
561.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
551.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
545.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
542.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
529.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
519.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
506.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
498.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
495.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
484.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
479.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
477.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
468.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
463.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
463.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
449.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
440.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
432.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
431.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
414.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
413.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
409.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
409.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
408.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
397.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
396.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
393.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
392.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
384.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
384.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
380.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
377.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
371.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
367.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
362.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
362.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
354.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
352.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
345.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
340.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
339.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
331.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
318.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
315.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
303.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
293.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
290.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
287.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
281.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
277.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
271.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
268.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
267.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
260.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
260.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
257.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
256.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
252.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
248.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
244.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
243.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
239.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
236.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
233.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
231.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
229.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
228.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
226.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
224.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
219.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
219.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
218.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
205.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
203.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
201.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
200.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
198.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
197.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
197.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
196.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
196.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
193.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
192.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
184.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
183.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
183.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
183.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
183.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
182.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
181.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
180.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
180.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
177.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
176.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
174.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
171.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
171.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
171.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
170.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
169.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
161.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
159.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
157.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
156.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
155.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
153.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
151.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
148.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
148.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
147.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
146.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
144.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
141.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
140.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
139.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
135.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
131.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
131.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
127.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
127.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
127.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
126.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
125.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
125.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
124.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
124.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
122.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
121.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
116.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
115.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
114.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
114.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
112.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
112.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
108.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
108.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
107.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
107.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
101.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
98.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
94.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
92.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
90.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
88.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
85.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
83.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
83.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
82.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
82.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
82.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
79.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
79.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
78.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
77.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
77.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
74.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
72.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
70.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
69.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
68.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
68.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
66.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
63.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
63.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
63.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
62.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
60.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
60.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
59.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
55.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
53.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
53.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
53.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
52.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.1
981
Tumor
1.1
745
Tumor
1.1
227
Tumor
1.0
114
Normal
0.8
196
Normal
0.8
568
Normal
0.8
132
Normal
0.8
911
Tumor
0.8
465
Tumor
0.7
861
Tumor
0.7
342
Normal
0.7
564
Normal
0.7
436
Normal
0.7
278
Normal
0.7
741
Tumor
0.7
571
Tumor
0.7
366
Normal
0.6
744
Normal
0.6
298
Normal
0.6
742
Normal
0.6
214
Normal
0.6
914
Normal
0.6
111
Normal
0.6
172
Normal
0.6
232
Normal
0.6
222
Normal
0.6
648
Normal
0.6
452
Normal
0.6
423
Tumor
0.6
446
Normal
0.6
422
Normal
0.5
816
Normal
0.5
698
Normal
0.5
426
Normal
0.5
344
Normal
0.5
353
Tumor
0.5
456
Normal
0.5
411
Tumor
0.5
746
Normal
0.5
518
Normal
0.5
314
Normal
0.5
388
Normal
0.5
228
Normal
0.5
272
Normal
0.5
728
Normal
0.5
261
Tumor
0.5
332
Normal
0.5
862
Normal
0.5
448
Normal
0.5
866
Normal
0.5
878
Normal
0.5
258
Normal
0.5
468
Normal
0.5
432
Normal
0.5
356
Normal
0.5
138
Normal
0.5
112
Tumor
0.5
618
Normal
0.5
738
Normal
0.5
376
Normal
0.5
148
Normal
0.4
546
Normal
0.4
412
Normal
0.4
186
Normal
0.4
864
Normal
0.4
1028
Normal
0.4
924
Normal
0.4
915
Tumor
0.4
882
Normal
0.4
396
Normal
0.4
982
Normal
0.4
466
Normal
0.4
572
Normal
0.4
358
Normal
0.4
616
Normal
0.4
462
Normal
0.4
464
Normal
0.4
824
Normal
0.4
136
Normal
0.4
362
Normal
0.4
1041
Tumor
0.4
867
Tumor
0.4
534
Normal
0.4
722
Normal
0.4
642
Normal
0.3
162
Normal
0.3
574
Normal
0.3
1022
Normal
0.3
474
Normal
0.3
874
Normal
0.3
944
Normal
0.3
286
Normal
0.3
1027
Tumor
0.3
431
Tumor
0.3
1026
Normal
0.3
664
Normal
0.3
662
Normal
0.3
786
Normal
0.3
428
Normal
0.3
938
Normal
0.3
554
Normal
0.3
628
Normal
0.3
126
Normal
0.3
1032
Normal
0.3
267
Tumor
0.3
615
Tumor
0.3
363
Tumor
0.3
818
Normal
0.3
858
Normal
0.2
713
Tumor
0.2
188
Normal
0.2
262
Normal
0.2
394
Normal
0.2
482
Normal
0.2
636
Normal
0.2
756
Normal
0.2
386
Normal
0.2
1043
Tumor
0.2
976
Normal
0.2
451
Tumor
0.2
424
Normal
0.2
218
Normal
0.2
328
Normal
0.2
472
Normal
0.2
714
Normal
0.2
956
Normal
0.2
146
Normal
0.2
414
Normal
0.2
686
Normal
0.2
868
Normal
0.2
723
Tumor
0.2
142
Normal
0.1
852
Normal
0.1
984
Normal
0.1
212
Normal
0.1
558
Normal
0.1
1014
Normal
0.1
922
Normal
0.1
484
Normal
0.1
137
Tumor
0.1
427
Tumor
0.1
1016
Normal
0.1
912
Normal
0.1
873
Tumor
0.1
666
Normal
0.1
352
Normal
0.1
1042
Normal
0.1
354
Normal
0.1
954
Normal
0.1
716
Normal
0.1
1044
Normal
0.1
312
Normal
0.0
268
Normal
0.0
434
Normal
0.0
364
Normal
0.0
964
Normal
0.0
327
Tumor
0.0
672
Normal
0.0
416
Normal
0.0
494
Normal
0.0
361
Tumor
0.0
392
Normal
0.0
384
Normal
0.0
1046
Normal
0.0
488
Normal
0.0
918
Normal
0.0
857
Tumor
0.0
755
Tumor
-0.1
368
Normal
-0.1
513
Tumor
-0.1
526
Normal
-0.1
528
Normal
-0.1
696
Normal
-0.1
433
Tumor
-0.1
968
Normal
-0.1
393
Tumor
-0.1
284
Normal
-0.1
952
Normal
-0.1
884
Normal
-0.1
124
Normal
-0.1
695
Tumor
-0.1
195
Tumor
-0.1
617
Tumor
-0.1
778
Normal
-0.1
538
Normal
-0.1
966
Normal
-0.1
481
Tumor
-0.1
161
Tumor
-0.1
514
Normal
-0.1
958
Normal
-0.1
171
Tumor
-0.1
516
Normal
-0.2
926
Normal
-0.2
444
Normal
-0.2
955
Tumor
-0.2
224
Normal
-0.2
697
Tumor
-0.2
477
Tumor
-0.2
187
Tumor
-0.2
685
Tumor
-0.2
123
Tumor
-0.2
127
Tumor
-0.3
533
Tumor
-0.3
435
Tumor
-0.3
925
Tumor
-0.3
978
Normal
-0.3
492
Normal
-0.3
113
Tumor
-0.4
1013
Tumor
-0.4
145
Tumor
-0.4
357
Tumor
-0.4
627
Tumor
-0.4
192
Normal
-0.4
383
Tumor
-0.4
715
Tumor
-0.4
977
Tumor
-0.4
727
Tumor
-0.4
1025
Tumor
-0.4
916
Normal
-0.4
141
Tumor
-0.4
257
Tumor
-0.5
721
Tumor
-0.5
217
Tumor
-0.5
923
Tumor
-0.5
478
Normal
-0.5
913
Tumor
-0.5
777
Tumor
-0.5
937
Tumor
-0.5
498
Normal
-0.5
515
Tumor
-0.5
231
Tumor
-0.6
443
Tumor
-0.6
191
Tumor
-0.6
647
Tumor
-0.6
421
Tumor
-0.6
341
Tumor
-0.6
1045
Tumor
-0.7
185
Tumor
-0.7
365
Tumor
-0.7
147
Tumor
-0.7
223
Tumor
-0.7
1021
Tumor
-0.7
415
Tumor
-0.7
524
Normal
-0.7
213
Tumor
-0.7
823
Tumor
-0.7
445
Tumor
-0.8
461
Tumor
-0.8
271
Tumor
-0.8
785
Tumor
-0.8
391
Tumor
-0.8
665
Tumor
-0.8
865
Tumor
-0.8
467
Tumor
-0.9
375
Tumor
-0.9
553
Tumor
-0.9
563
Tumor
-0.9
851
Tumor
-0.9
963
Tumor
-0.9
483
Tumor
-0.9
863
Tumor
-1.0
473
Tumor
-1.0
557
Tumor
-1.0
573
Tumor
-1.0
387
Tumor
-1.0
487
Tumor
-1.0
221
Tumor
-1.0
277
Tumor
-1.0
517
Tumor
-1.0
635
Tumor
-1.0
883
Tumor
-1.0
967
Tumor
-1.0
957
Tumor
-1.0
1031
Tumor
-1.0
493
Tumor
-1.1
413
Tumor
-1.1
567
Tumor
-1.1
641
Tumor
-1.1
471
Tumor
-1.1
537
Tumor
-1.1
525
Tumor
-1.1
814
Normal
-1.1
355
Tumor
-1.1
921
Tumor
-1.2
737
Tumor
-1.2
297
Tumor
-1.2
135
Tumor
-1.2
367
Tumor
-1.2
447
Tumor
-1.2
663
Tumor
-1.2
536
Normal
-1.3
131
Tumor
-1.3
491
Tumor
-1.3
313
Tumor
-1.3
817
Tumor
-1.3
881
Tumor
-1.4
331
Tumor
-1.4
425
Tumor
-1.4
455
Tumor
-1.4
351
Tumor
-1.4
1015
Tumor
-1.4
724
Normal
-1.4
983
Tumor
-1.5
743
Tumor
-1.5
877
Tumor
-1.5
523
Tumor
-1.5
965
Tumor
-1.5
463
Tumor
-1.5
527
Tumor
-1.6
395
Tumor
-1.6
813
Tumor
-1.6
285
Tumor
-1.6
545
Tumor
-1.6
953
Tumor
-1.6
943
Tumor
-1.6
815
Tumor
-1.6
917
Tumor
-1.6
125
Tumor
-1.6
343
Tumor
-1.6
311
Tumor
-1.7
951
Tumor
-1.7
975
Tumor
-1.7
535
Tumor
-1.8
671
Tumor
-1.9
497
Tumor
-2.0
283
Tumor
-2.0
385
Tumor
-2.1
211
Tumor
-2.1
661
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.