Expression of SELENOK in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

SELENOK is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 32.01

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

31.6

Number of samples

362

Samples

Sample	Description	TPM
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	78.5
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	76.6
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	72.7
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	70.8
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	70.5
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	68.1
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	67.6
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	62.5
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	61.5
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	61.3
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	59.1
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	59.1
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	58.5
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	56.0
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	55.3
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	54.5
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	53.6
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	53.5
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	52.8
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	51.5
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	50.4
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	49.1
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	49.0
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	48.7
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	48.5
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	48.3
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	48.2
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	47.7
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	47.6
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	47.5
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	47.4
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	46.8
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	46.3
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	46.2
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	46.2
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	45.9
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	45.7
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	45.4
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	45.3
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	45.3
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	45.0
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	44.8
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	44.4
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	44.4
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	44.3
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	44.2
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	44.2
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	44.1
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	44.0
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	43.4
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	43.2
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	43.0
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	42.5
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	42.5
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	42.3
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	42.2
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	41.8
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	41.7
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	41.6
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	41.6
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	41.4
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	41.3
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	41.2
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	41.2
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	41.0
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	40.5
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	40.4
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	40.4
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	40.3
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	40.3
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	39.8
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	39.5
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	39.5
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	39.3
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	39.0
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	39.0
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	38.9
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	38.9
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	38.8
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	38.6
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	38.5
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	38.4
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	38.2
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	38.0
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	37.9
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	37.9
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	37.3
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	37.2
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	37.1
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	37.1
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	36.8
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	36.8
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	36.8
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	36.7
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	36.4
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	36.4
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	36.3
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	36.3
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	36.2
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	36.2
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	36.2
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	36.0
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	36.0
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	35.9
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	35.8
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	35.6
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	35.6
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	35.5
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	35.4
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	35.3
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	35.3
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	35.1
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	34.9
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	34.8
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	34.8
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	34.6
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	34.4
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	34.4
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	34.3
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	34.1
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	34.0
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	33.9
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	33.9
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	33.8
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	33.7
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	33.7
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	33.6
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	33.6
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	33.5
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	33.4
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	33.2
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	33.1
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	33.0
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	33.0
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	33.0
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	33.0
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	32.9
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	32.7
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	32.6
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	32.6
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	32.5
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	32.5
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	32.5
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	32.4
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	32.1
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	32.1
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	32.1
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	32.0
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	32.0
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	32.0
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	31.9
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	31.8
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	31.7
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	31.7
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	31.6
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	31.4
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	31.4
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	31.2
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	31.1
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	30.9
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	30.8
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	30.8
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	30.5
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	30.5
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	30.4
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	30.4
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	30.4
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	30.3
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	30.2
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	30.1
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	30.1
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	29.9
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	29.9
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	29.8
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	29.8
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	29.7
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	29.7
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	29.7
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	29.6
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	29.5
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	29.5
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	29.5
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	29.5
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	29.5
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	29.4
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	29.4
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	29.4
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	29.3
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	29.3
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	29.3
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	29.2
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	29.2
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	29.1
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	28.9
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	28.8
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	28.8
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	28.7
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	28.7
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	28.6
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	28.6
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	28.5
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	28.4
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	28.4
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	28.1
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	28.0
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	27.9
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	27.9
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	27.7
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	27.6
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	27.5
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	27.5
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	27.5
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	27.5
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	27.4
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	27.4
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	27.4
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	27.4
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	27.3
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	27.1
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	27.0
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	27.0
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	27.0
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	27.0
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	26.9
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	26.9
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	26.9
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	26.8
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	26.8
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	26.7
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	26.7
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	26.7
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	26.6
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	26.5
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	26.4
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	26.4
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	26.3
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	26.2
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	26.0
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	26.0
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	26.0
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	25.9
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	25.8
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	25.8
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	25.7
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	25.7
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	25.6
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	25.6
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	25.5
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	25.4
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	25.4
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	25.3
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	25.2
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	25.2
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	25.0
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	25.0
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	24.9
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	24.9
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	24.9
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	24.8
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	24.7
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	24.7
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	24.7
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	24.6
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	24.6
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	24.6
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	24.5
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	24.5
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	24.5
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	24.4
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	24.4
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	24.3
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	24.1
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	23.9
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	23.7
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	23.6
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	23.5
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	23.5
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	23.5
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	23.4
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	23.4
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	23.3
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	23.2
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	23.1
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	22.9
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	22.8
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	22.6
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	22.6
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	22.6
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	22.6
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	22.5
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	22.5
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	22.4
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	22.4
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	22.4
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	22.4
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	22.3
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	22.3
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	22.2
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	22.1
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	21.8
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	21.7
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	21.7
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	21.6
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	21.5
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	21.4
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	21.4
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	21.3
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	21.3
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	21.3
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	21.2
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	21.2
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	21.1
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	21.0
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	20.9
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	20.9
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	20.9
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	20.5
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	20.5
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	20.4
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	20.2
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	20.0
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	20.0
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	19.8
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	19.8
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	19.5
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	19.4
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	19.3
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	19.3
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	19.3
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	19.3
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	19.3
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	19.2
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	19.2
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	19.0
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	18.7
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	18.7
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	18.5
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	18.5
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	18.4
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	18.2
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	18.1
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	18.1
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	18.0
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	17.9
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	17.8
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	17.6
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	16.9
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	16.7
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	16.4
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	16.3
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	16.2
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	16.0
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	15.7
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	15.4
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	15.4
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	15.3
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	14.9
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	14.9
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	14.7
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	14.4
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	13.0
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	10.9
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
211	Tumor	1.5
395	Tumor	1.3
697	Tumor	1.2
937	Tumor	1.1
615	Tumor	1.0
535	Tumor	1.0
525	Tumor	1.0
724	Normal	0.9
965	Tumor	0.9
383	Tumor	0.9
963	Tumor	0.9
915	Tumor	0.9
1045	Tumor	0.9
957	Tumor	0.8
487	Tumor	0.8
524	Normal	0.7
385	Tumor	0.7
448	Normal	0.7
516	Normal	0.7
518	Normal	0.7
387	Tumor	0.7
327	Tumor	0.7
447	Tumor	0.6
983	Tumor	0.6
911	Tumor	0.6
878	Normal	0.6
331	Tumor	0.6
328	Normal	0.6
514	Normal	0.6
1015	Tumor	0.6
515	Tumor	0.6
277	Tumor	0.6
536	Normal	0.6
966	Normal	0.6
135	Tumor	0.5
351	Tumor	0.5
517	Tumor	0.5
1046	Normal	0.5
311	Tumor	0.5
628	Normal	0.5
271	Tumor	0.5
866	Normal	0.5
665	Tumor	0.5
573	Tumor	0.5
967	Tumor	0.5
384	Normal	0.5
818	Normal	0.5
223	Tumor	0.5
523	Tumor	0.5
483	Tumor	0.4
1042	Normal	0.4
861	Tumor	0.4
467	Tumor	0.4
867	Tumor	0.4
492	Normal	0.4
1028	Normal	0.4
368	Normal	0.4
661	Tumor	0.4
857	Tumor	0.4
393	Tumor	0.4
698	Normal	0.4
364	Normal	0.4
427	Tumor	0.4
741	Tumor	0.4
484	Normal	0.4
943	Tumor	0.4
1026	Normal	0.4
671	Tumor	0.4
286	Normal	0.4
526	Normal	0.4
341	Tumor	0.4
627	Tumor	0.4
367	Tumor	0.4
498	Normal	0.3
533	Tumor	0.3
231	Tumor	0.3
471	Tumor	0.3
375	Tumor	0.3
396	Normal	0.3
642	Normal	0.3
283	Tumor	0.3
917	Tumor	0.3
481	Tumor	0.3
647	Tumor	0.3
918	Normal	0.3
951	Tumor	0.3
1041	Tumor	0.3
1022	Normal	0.3
1016	Normal	0.3
817	Tumor	0.3
446	Normal	0.3
728	Normal	0.2
672	Normal	0.2
636	Normal	0.2
852	Normal	0.2
913	Tumor	0.2
558	Normal	0.2
721	Tumor	0.2
412	Normal	0.2
816	Normal	0.2
212	Normal	0.2
1044	Normal	0.2
434	Normal	0.2
284	Normal	0.2
964	Normal	0.2
1032	Normal	0.2
357	Tumor	0.2
616	Normal	0.2
722	Normal	0.2
546	Normal	0.2
727	Tumor	0.2
466	Normal	0.2
568	Normal	0.2
497	Tumor	0.2
465	Tumor	0.2
968	Normal	0.2
953	Tumor	0.2
618	Normal	0.2
981	Tumor	0.2
744	Normal	0.2
376	Normal	0.2
137	Tumor	0.2
132	Normal	0.2
455	Tumor	0.2
131	Tumor	0.2
944	Normal	0.2
228	Normal	0.2
171	Tumor	0.2
138	Normal	0.1
422	Normal	0.1
858	Normal	0.1
984	Normal	0.1
954	Normal	0.1
488	Normal	0.1
285	Tumor	0.1
411	Tumor	0.1
355	Tumor	0.1
662	Normal	0.1
148	Normal	0.1
714	Normal	0.1
864	Normal	0.1
545	Tumor	0.1
785	Tumor	0.1
366	Normal	0.1
824	Normal	0.1
982	Normal	0.1
161	Tumor	0.1
363	Tumor	0.1
464	Normal	0.1
922	Normal	0.1
938	Normal	0.1
356	Normal	0.1
685	Tumor	0.1
1014	Normal	0.1
862	Normal	0.1
268	Normal	0.1
494	Normal	0.1
362	Normal	0.1
563	Tumor	0.1
126	Normal	0.1
456	Normal	0.1
572	Normal	0.1
648	Normal	0.1
958	Normal	0.1
635	Tumor	0.1
537	Tumor	0.1
343	Tumor	0.1
975	Tumor	0.1
113	Tumor	0.1
127	Tumor	0.0
463	Tumor	0.0
567	Tumor	0.0
477	Tumor	0.0
474	Normal	0.0
882	Normal	0.0
146	Normal	0.0
527	Tumor	0.0
482	Normal	0.0
978	Normal	0.0
564	Normal	0.0
716	Normal	0.0
415	Tumor	0.0
222	Normal	0.0
142	Normal	0.0
214	Normal	0.0
258	Normal	0.0
777	Tumor	0.0
257	Tumor	0.0
192	Normal	0.0
737	Tumor	0.0
641	Tumor	0.0
617	Tumor	0.0
413	Tumor	0.0
262	Normal	0.0
574	Normal	0.0
478	Normal	0.0
956	Normal	0.0
365	Tumor	0.0
111	Normal	0.0
914	Normal	-0.1
916	Normal	-0.1
955	Tumor	-0.1
218	Normal	-0.1
786	Normal	-0.1
952	Normal	-0.1
554	Normal	-0.1
538	Normal	-0.1
426	Normal	-0.1
344	Normal	-0.1
696	Normal	-0.1
924	Normal	-0.1
868	Normal	-0.1
114	Normal	-0.1
686	Normal	-0.1
297	Tumor	-0.1
416	Normal	-0.1
1025	Tumor	-0.1
232	Normal	-0.1
814	Normal	-0.1
188	Normal	-0.1
664	Normal	-0.1
187	Tumor	-0.1
926	Normal	-0.1
491	Tumor	-0.1
823	Tumor	-0.1
436	Normal	-0.1
884	Normal	-0.1
196	Normal	-0.1
921	Tumor	-0.1
738	Normal	-0.1
513	Tumor	-0.1
386	Normal	-0.1
472	Normal	-0.1
352	Normal	-0.1
468	Normal	-0.1
452	Normal	-0.1
571	Tumor	-0.1
185	Tumor	-0.1
217	Tumor	-0.2
432	Normal	-0.2
445	Tumor	-0.2
1031	Tumor	-0.2
493	Tumor	-0.2
261	Tumor	-0.2
746	Normal	-0.2
125	Tumor	-0.2
227	Tumor	-0.2
278	Normal	-0.2
666	Normal	-0.2
813	Tumor	-0.2
528	Normal	-0.2
213	Tumor	-0.2
534	Normal	-0.2
361	Tumor	-0.2
425	Tumor	-0.2
428	Normal	-0.2
745	Tumor	-0.2
423	Tumor	-0.2
881	Tumor	-0.2
473	Tumor	-0.2
925	Tumor	-0.2
388	Normal	-0.2
851	Tumor	-0.2
353	Tumor	-0.2
224	Normal	-0.2
391	Tumor	-0.2
272	Normal	-0.2
553	Tumor	-0.2
723	Tumor	-0.2
298	Normal	-0.3
742	Normal	-0.3
128	Normal	-0.3
267	Tumor	-0.3
756	Normal	-0.3
977	Tumor	-0.3
874	Normal	-0.3
778	Normal	-0.3
354	Normal	-0.3
312	Normal	-0.3
755	Tumor	-0.3
1027	Tumor	-0.3
444	Normal	-0.3
191	Tumor	-0.3
461	Tumor	-0.3
923	Tumor	-0.3
124	Normal	-0.3
195	Tumor	-0.3
663	Tumor	-0.3
743	Tumor	-0.3
392	Normal	-0.3
451	Tumor	-0.4
342	Normal	-0.4
873	Tumor	-0.4
172	Normal	-0.4
424	Normal	-0.4
162	Normal	-0.4
815	Tumor	-0.4
421	Tumor	-0.4
1013	Tumor	-0.4
431	Tumor	-0.4
145	Tumor	-0.4
414	Normal	-0.4
912	Normal	-0.4
221	Tumor	-0.4
136	Normal	-0.4
1043	Tumor	-0.5
141	Tumor	-0.5
713	Tumor	-0.5
695	Tumor	-0.5
394	Normal	-0.5
332	Normal	-0.5
462	Normal	-0.5
433	Tumor	-0.5
313	Tumor	-0.6
1021	Tumor	-0.6
358	Normal	-0.6
112	Tumor	-0.6
557	Tumor	-0.6
123	Tumor	-0.6
314	Normal	-0.7
976	Normal	-0.7
147	Tumor	-0.7
865	Tumor	-0.7
715	Tumor	-0.8
883	Tumor	-0.8
435	Tumor	-0.8
186	Normal	-0.8
877	Tumor	-0.9
863	Tumor	-0.9
443	Tumor	-1.3
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA008196
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS