MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA Brain:60.3 nTPM
GTEx:38.7 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:19.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.8
2586 Male, age 75, left hemisphere 81.1
2828 Female, age 72, unknown 66.8
2666 Male, age 74, left hemisphere 55.6
1827 Male, age 72, unknown 54.0
2019 Male, age 18, unknown 51.6
2411 Female, age 72, unknown 38.3
1870 Female, age 42, unknown 38.2
1833 Male, age 53, unknown 36.8
1830 Male, age 51, unknown 34.6
2219 Male, age 76, both hemispheres 30.9
Dorsal raphe nucleus
nTPM: 56.7
2016 Female, age 72, unknown 74.7
1828 Male, age 53, unknown 66.3
2298 Female, age 72, unknown 55.5
2047 Male, age 72, unknown 51.6
2750 Male, age 76, both hemispheres 35.5
Inferior colliculus
nTPM: 48.5
1848 Female, age 42, unknown 54.4
2849 Male, age 72, unknown 50.5
1890 Male, age 53, unknown 46.5
2097 Female, age 72, unknown 42.7
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 56.5
1795 Male, age 51, unknown 67.2
2502 Female, age 75, unknown 52.1
1947 Male, age 18, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 60.3
2850 Male, age 76, both hemispheres 75.5
1840 Male, age 53, unknown 64.9
2464 Female, age 72, unknown 53.6
1831 Male, age 72, unknown 47.2
Periaquaductal grey, lateral
nTPM: 57.6
2140 Male, age 76, both hemispheres 68.0
2272 Male, age 74, both hemispheres 52.9
2053 Male, age 18, unknown 51.8
Pretectal area
nTPM: 50.7
1816 Male, age 51, unknown 60.1
2007 Male, age 72, unknown 60.0
1817 Female, age 42, unknown 56.8
1815 Male, age 53, unknown 55.6
1944 Female, age 72, unknown 55.3
2667 Female, age 75, unknown 48.8
2316 Male, age 76, right hemisphere 47.4
2273 Male, age 74, both hemispheres 45.9
2825 Male, age 18, unknown 45.1
2224 Female, age 72, unknown 44.4
2407 Male, age 75, both hemispheres 38.6
Red nucleus
nTPM: 46.8
2725 Female, age 75, unknown 55.0
2588 Male, age 74, left hemisphere 54.3
2503 Female, age 72, unknown 53.2
1954 Female, age 42, unknown 48.7
2785 Male, age 18, unknown 47.3
2227 Male, age 72, unknown 47.1
2823 Male, age 76, right hemisphere 46.3
2769 Male, age 72, unknown 45.7
2584 Male, age 75, left hemisphere 44.9
1821 Female, age 72, unknown 40.1
1865 Male, age 51, unknown 39.5
1904 Male, age 53, unknown 39.1
Substantia nigra
nTPM: 48.1
1916 Female, age 42, unknown 57.2
2665 Male, age 74, both hemispheres 56.5
2699 Male, age 18, unknown 52.1
1889 Female, age 72, unknown 49.1
2583 Male, age 75, right hemisphere 48.9
1851 Male, age 51, unknown 44.7
2590 Female, age 75, unknown 44.7
1941 Male, age 53, unknown 43.7
2409 Female, age 72, unknown 43.1
2241 Male, age 72, unknown 41.4
Superior colliculus
nTPM: 50.2
2664 Male, age 75, both hemispheres 64.7
2261 Male, age 18, unknown 55.9
1796 Male, age 53, unknown 55.1
1995 Male, age 72, unknown 53.6
2668 Female, age 75, unknown 49.7
2087 Female, age 72, unknown 49.3
1839 Male, age 51, unknown 49.2
2587 Male, age 74, left hemisphere 43.9
1913 Female, age 42, unknown 42.9
1895 Male, age 76, right hemisphere 38.0
Ventral tegmental area
nTPM: 43.8
1942 Male, age 51, unknown 51.8
2021 Male, age 53, unknown 46.0
2410 Female, age 72, unknown 44.4
1915 Female, age 42, unknown 43.7
2218 Male, age 76, both hemispheres 41.0
2223 Female, age 72, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 139

Max nTPM: 90.2
Min nTPM: 8.9
Std nTPM: 16.6
Median nTPM: 36.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 90.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 80.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 80.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 80.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 72.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 67.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 67.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 64.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.5
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.2
Sample A Female 18.2
Sample B Female 17.2
Sample C Male 21.6
Sample D Male 25.1
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 32.8
Min nTPM: 20.1
Sample A Female 20.2
Sample B Female 20.1
Sample C Male 31.1
Sample D Male 32.8
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 26.5
Min nTPM: 19.7
Sample B Female 23.0
Sample C Male 26.5
Sample D Male 19.7
Superior colliculi
nTPM: 26.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 23.0
Sample A Female 28.9
Sample B Female 23.0
Sample C Male 28.4
Sample D Male 25.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.9
Sample A Male 19.1
Sample B Male 17.9
Sample C Female 19.7
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75750439 Antisense, RP_060518_04_H01, Mouse strain C57BL/6J (56 days, male) 1.9
71020388 Antisense, RP_050725_01_A08, Mouse strain C57BL/6J (56 days, male) 1.1

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