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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC24A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC24A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45091
0 years, male, NA, stage:2, dead, 1320 days
40.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
353
Tumor
1.1
123
Tumor
0.9
1027
Tumor
0.7
571
Tumor
0.6
327
Tumor
0.6
745
Tumor
0.6
777
Tumor
0.6
277
Tumor
0.5
365
Tumor
0.5
443
Tumor
0.5
113
Tumor
0.5
515
Tumor
0.5
617
Tumor
0.5
865
Tumor
0.5
223
Tumor
0.4
627
Tumor
0.4
191
Tumor
0.4
145
Tumor
0.4
137
Tumor
0.4
428
Normal
0.4
221
Tumor
0.4
414
Normal
0.4
111
Normal
0.4
523
Tumor
0.4
423
Tumor
0.4
421
Tumor
0.4
424
Normal
0.4
863
Tumor
0.4
868
Normal
0.4
647
Tumor
0.4
147
Tumor
0.4
171
Tumor
0.4
481
Tumor
0.4
383
Tumor
0.3
314
Normal
0.3
136
Normal
0.3
527
Tumor
0.3
132
Normal
0.3
358
Normal
0.3
258
Normal
0.3
148
Normal
0.3
648
Normal
0.3
451
Tumor
0.3
618
Normal
0.3
187
Tumor
0.3
1045
Tumor
0.3
426
Normal
0.3
162
Normal
0.3
422
Normal
0.3
436
Normal
0.3
641
Tumor
0.3
261
Tumor
0.3
462
Normal
0.3
1021
Tumor
0.3
482
Normal
0.3
161
Tumor
0.3
464
Normal
0.3
114
Normal
0.3
467
Tumor
0.3
172
Normal
0.3
363
Tumor
0.3
786
Normal
0.3
937
Tumor
0.3
446
Normal
0.3
195
Tumor
0.3
851
Tumor
0.3
376
Normal
0.2
222
Normal
0.2
664
Normal
0.2
513
Tumor
0.2
564
Normal
0.2
366
Normal
0.2
218
Normal
0.2
465
Tumor
0.2
368
Normal
0.2
196
Normal
0.2
665
Tumor
0.2
977
Tumor
0.2
526
Normal
0.2
186
Normal
0.2
356
Normal
0.2
214
Normal
0.2
432
Normal
0.2
362
Normal
0.2
387
Tumor
0.2
354
Normal
0.2
456
Normal
0.2
628
Normal
0.2
126
Normal
0.2
328
Normal
0.2
514
Normal
0.2
518
Normal
0.2
824
Normal
0.2
396
Normal
0.2
466
Normal
0.2
435
Tumor
0.2
724
Normal
0.2
135
Tumor
0.2
411
Tumor
0.2
375
Tumor
0.2
262
Normal
0.2
232
Normal
0.2
742
Normal
0.2
642
Normal
0.2
392
Normal
0.2
128
Normal
0.2
285
Tumor
0.2
472
Normal
0.2
257
Tumor
0.2
217
Tumor
0.1
352
Normal
0.1
188
Normal
0.1
557
Tumor
0.1
427
Tumor
0.1
738
Normal
0.1
666
Normal
0.1
141
Tumor
0.1
388
Normal
0.1
416
Normal
0.1
866
Normal
0.1
213
Tumor
0.1
278
Normal
0.1
568
Normal
0.1
882
Normal
0.1
138
Normal
0.1
662
Normal
0.1
884
Normal
0.1
1016
Normal
0.1
727
Tumor
0.1
332
Normal
0.1
635
Tumor
0.1
1013
Tumor
0.1
1043
Tumor
0.1
864
Normal
0.1
394
Normal
0.1
124
Normal
0.1
395
Tumor
0.1
1046
Normal
0.1
384
Normal
0.1
298
Normal
0.1
912
Normal
0.1
746
Normal
0.1
874
Normal
0.1
858
Normal
0.1
461
Tumor
0.1
468
Normal
0.1
723
Tumor
0.1
728
Normal
0.1
964
Normal
0.1
312
Normal
0.1
914
Normal
0.1
268
Normal
0.1
452
Normal
0.1
431
Tumor
0.1
636
Normal
0.1
146
Normal
0.1
713
Tumor
0.1
286
Normal
0.1
434
Normal
0.1
393
Tumor
0.1
433
Tumor
0.1
722
Normal
0.1
272
Normal
0.1
537
Tumor
0.1
231
Tumor
0.1
823
Tumor
0.1
915
Tumor
0.1
534
Normal
0.1
474
Normal
0.1
386
Normal
0.1
528
Normal
0.1
816
Normal
0.1
873
Tumor
0.1
142
Normal
0.1
862
Normal
0.0
412
Normal
0.0
921
Tumor
0.0
672
Normal
0.0
574
Normal
0.0
714
Normal
0.0
756
Normal
0.0
572
Normal
0.0
533
Tumor
0.0
361
Tumor
0.0
818
Normal
0.0
355
Tumor
0.0
558
Normal
0.0
877
Tumor
0.0
391
Tumor
0.0
212
Normal
0.0
563
Tumor
0.0
271
Tumor
0.0
228
Normal
0.0
112
Tumor
0.0
127
Tumor
0.0
192
Normal
0.0
913
Tumor
0.0
978
Normal
0.0
663
Tumor
0.0
878
Normal
0.0
494
Normal
0.0
867
Tumor
0.0
952
Normal
0.0
923
Tumor
0.0
938
Normal
0.0
983
Tumor
0.0
1042
Normal
0.0
455
Tumor
0.0
413
Tumor
0.0
567
Tumor
0.0
926
Normal
0.0
364
Normal
0.0
956
Normal
0.0
778
Normal
0.0
227
Tumor
0.0
484
Normal
0.0
344
Normal
0.0
553
Tumor
0.0
1014
Normal
0.0
267
Tumor
0.0
517
Tumor
0.0
185
Tumor
0.0
1026
Normal
0.0
918
Normal
0.0
883
Tumor
0.0
743
Tumor
0.0
284
Normal
0.0
755
Tumor
0.0
957
Tumor
0.0
944
Normal
-0.1
982
Normal
-0.1
922
Normal
-0.1
546
Normal
-0.1
968
Normal
-0.1
525
Tumor
-0.1
911
Tumor
-0.1
1032
Normal
-0.1
1044
Normal
-0.1
984
Normal
-0.1
444
Normal
-0.1
951
Tumor
-0.1
1025
Tumor
-0.1
852
Normal
-0.1
448
Normal
-0.1
297
Tumor
-0.1
696
Normal
-0.1
463
Tumor
-0.1
1022
Normal
-0.1
488
Normal
-0.1
367
Tumor
-0.1
415
Tumor
-0.1
341
Tumor
-0.1
477
Tumor
-0.1
686
Normal
-0.1
1028
Normal
-0.1
954
Normal
-0.1
224
Normal
-0.1
963
Tumor
-0.1
524
Normal
-0.1
744
Normal
-0.1
981
Tumor
-0.1
487
Tumor
-0.1
471
Tumor
-0.1
716
Normal
-0.1
916
Normal
-0.1
698
Normal
-0.2
857
Tumor
-0.2
695
Tumor
-0.2
924
Normal
-0.2
554
Normal
-0.2
615
Tumor
-0.2
483
Tumor
-0.2
697
Tumor
-0.2
976
Normal
-0.2
425
Tumor
-0.2
313
Tumor
-0.2
473
Tumor
-0.2
881
Tumor
-0.2
965
Tumor
-0.2
958
Normal
-0.2
125
Tumor
-0.2
721
Tumor
-0.2
814
Normal
-0.2
966
Normal
-0.2
498
Normal
-0.2
516
Normal
-0.2
357
Tumor
-0.2
813
Tumor
-0.2
493
Tumor
-0.2
737
Tumor
-0.2
491
Tumor
-0.2
616
Normal
-0.2
478
Normal
-0.2
331
Tumor
-0.2
385
Tumor
-0.2
967
Tumor
-0.2
955
Tumor
-0.2
1041
Tumor
-0.3
741
Tumor
-0.3
815
Tumor
-0.3
131
Tumor
-0.3
497
Tumor
-0.3
492
Normal
-0.3
671
Tumor
-0.3
685
Tumor
-0.3
211
Tumor
-0.3
535
Tumor
-0.3
785
Tumor
-0.3
311
Tumor
-0.3
925
Tumor
-0.4
538
Normal
-0.4
536
Normal
-0.4
861
Tumor
-0.4
342
Normal
-0.4
573
Tumor
-0.4
953
Tumor
-0.4
447
Tumor
-0.4
1031
Tumor
-0.4
817
Tumor
-0.4
661
Tumor
-0.5
1015
Tumor
-0.5
715
Tumor
-0.5
343
Tumor
-0.5
445
Tumor
-0.5
545
Tumor
-0.5
351
Tumor
-0.5
975
Tumor
-0.5
917
Tumor
-0.5
283
Tumor
-0.6
943
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
