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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SKP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
223.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
534.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
450.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
446.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
440.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
422.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
414.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
413.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
412.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
407.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
389.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
388.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
385.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
381.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
377.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
377.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
374.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
373.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
372.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
370.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
366.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
363.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
362.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
362.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
360.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
359.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
359.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
356.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
355.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
354.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
354.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
354.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
342.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
342.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
339.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
339.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
336.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
335.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
335.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
335.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
334.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
334.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
334.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
333.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
333.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
333.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
331.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
331.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
330.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
330.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
329.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
327.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
326.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
321.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
321.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
315.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
314.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
313.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
306.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
304.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
304.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
302.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
301.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
296.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
296.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
293.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
290.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
290.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
289.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
288.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
287.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
287.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
287.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
287.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
286.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
284.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
284.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
283.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
282.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
282.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
281.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
281.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
281.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
280.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
278.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
277.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
276.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
275.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
274.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
274.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
274.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
272.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
270.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
270.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
270.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
269.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
269.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
268.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
268.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
268.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
267.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
267.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
266.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
265.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
265.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
264.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
263.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
263.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
262.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
260.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
260.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
260.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
260.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
259.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
258.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
258.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
257.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
257.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
256.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
256.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
256.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
255.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
255.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
255.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
255.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
254.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
252.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
252.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
251.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
251.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
250.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
250.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
250.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
249.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
248.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
247.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
247.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
246.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
246.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
245.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
245.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
245.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
244.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
244.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
243.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
242.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
241.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
241.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
239.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
239.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
237.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
237.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
236.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
235.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
234.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
234.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
233.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
233.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
232.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
232.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
231.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
231.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
230.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
230.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
230.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
230.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
229.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
229.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
229.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
228.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
228.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
227.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
225.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
225.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
225.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
223.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
222.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
222.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
220.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
220.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
220.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
219.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
218.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
217.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
217.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
216.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
216.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
216.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
215.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
215.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
215.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
214.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
214.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
214.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
214.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
214.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
213.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
213.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
211.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
211.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
211.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
210.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
210.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
209.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
208.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
207.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
204.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
203.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
203.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
203.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
203.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
203.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
202.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
202.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
201.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
201.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
201.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
199.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
199.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
199.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
199.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
198.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
198.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
197.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
197.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
196.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
195.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
195.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
195.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
193.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
192.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
191.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
191.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
190.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
190.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
189.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
188.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
188.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
187.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
187.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
186.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
186.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
185.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
183.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
182.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
181.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
180.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
179.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
178.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
178.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
175.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
175.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
175.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
174.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
174.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
174.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
173.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
172.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
172.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
172.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
171.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
171.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
171.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
170.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
170.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
169.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
168.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
168.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
168.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
167.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
167.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
166.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
165.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
164.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
162.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
161.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
161.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
159.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
159.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
159.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
158.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
158.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
158.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
157.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
156.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
155.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
155.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
152.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
152.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
152.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
151.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
151.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
148.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
145.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
145.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
145.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
144.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
143.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
143.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
142.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
141.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
137.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
137.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
136.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
135.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
134.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
134.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
132.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
132.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
132.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
130.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
129.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
128.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
128.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
125.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
125.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
124.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
124.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
124.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
123.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
123.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
119.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
118.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
117.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
116.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
116.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
115.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
114.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
114.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
114.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
113.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
111.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
109.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
108.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
106.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
105.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
103.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
102.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
97.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
96.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
96.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
95.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
93.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
92.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
84.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
82.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
80.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
79.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
79.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
76.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
75.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
75.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
71.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
71.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
68.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
64.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
58.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
51.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
51.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
50.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
48.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SKP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
107.5
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
323.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
254.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
202.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
200.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
191.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
190.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
187.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
180.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
179.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
176.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
173.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
172.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
169.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
167.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
167.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
166.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
165.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
161.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
161.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
157.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
157.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
157.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
155.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
153.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
153.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
153.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
152.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
151.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
150.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
150.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
148.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
148.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
148.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
146.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
146.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
143.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
143.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
142.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
142.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
142.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
141.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
141.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
140.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
139.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
139.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
138.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
138.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
137.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
137.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
137.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
137.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
136.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
136.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
135.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
133.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
133.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
132.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
132.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
131.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
131.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
131.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
129.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
129.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
128.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
128.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
127.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
126.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
125.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
125.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
125.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
124.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
124.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
123.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
123.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
123.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
123.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
122.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
122.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
122.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
122.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
121.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
121.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
121.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
120.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
119.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
119.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
118.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
118.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
118.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
117.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
117.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
117.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
116.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
116.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
115.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
113.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
113.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
113.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
113.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
112.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
112.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
112.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
112.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
110.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
110.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
109.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
109.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
109.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
109.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
109.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
109.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
108.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
108.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
108.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
108.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
107.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
107.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
106.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
105.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
104.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
104.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
104.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
103.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
103.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
102.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
101.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
101.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
101.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
99.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
98.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
98.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
98.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
98.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
97.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
96.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
96.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
95.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
95.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
95.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
94.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
94.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
94.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
93.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
92.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
92.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
91.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
91.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
90.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
90.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
89.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
89.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
89.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
89.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
88.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
87.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
86.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
86.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
85.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
85.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
85.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
84.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
82.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
81.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
81.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
81.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
80.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
80.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
80.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
79.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
77.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
76.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
76.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
75.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
75.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
75.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
74.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
74.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
74.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
73.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
73.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
73.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
72.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
72.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
71.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
71.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
71.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
69.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
68.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
68.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
67.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
67.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
67.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
65.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
64.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
61.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
61.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
58.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
58.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
58.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
57.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
55.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
55.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
53.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
51.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
48.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
44.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.8
513
Tumor
1.4
627
Tumor
1.4
523
Tumor
1.3
461
Tumor
1.2
685
Tumor
1.2
1027
Tumor
1.2
863
Tumor
1.1
615
Tumor
1.0
365
Tumor
0.9
515
Tumor
0.9
423
Tumor
0.8
137
Tumor
0.7
527
Tumor
0.7
1013
Tumor
0.7
1021
Tumor
0.6
867
Tumor
0.6
865
Tumor
0.5
533
Tumor
0.5
965
Tumor
0.5
727
Tumor
0.5
755
Tumor
0.4
953
Tumor
0.4
131
Tumor
0.4
416
Normal
0.4
737
Tumor
0.3
395
Tumor
0.3
327
Tumor
0.3
465
Tumor
0.3
481
Tumor
0.3
1031
Tumor
0.3
913
Tumor
0.3
967
Tumor
0.3
285
Tumor
0.3
161
Tumor
0.3
147
Tumor
0.3
741
Tumor
0.3
393
Tumor
0.3
487
Tumor
0.3
1043
Tumor
0.2
517
Tumor
0.2
745
Tumor
0.2
785
Tumor
0.2
443
Tumor
0.2
518
Normal
0.2
455
Tumor
0.2
535
Tumor
0.2
814
Normal
0.2
277
Tumor
0.2
187
Tumor
0.2
141
Tumor
0.1
545
Tumor
0.1
536
Normal
0.1
923
Tumor
0.1
977
Tumor
0.1
411
Tumor
0.1
477
Tumor
0.1
223
Tumor
0.1
743
Tumor
0.1
951
Tumor
0.1
723
Tumor
0.1
957
Tumor
0.1
537
Tumor
0.1
473
Tumor
0.1
328
Normal
0.1
914
Normal
0.1
221
Tumor
0.1
341
Tumor
0.1
813
Tumor
0.1
172
Normal
0.1
1045
Tumor
0.1
883
Tumor
0.1
955
Tumor
0.1
257
Tumor
0.1
553
Tumor
0.1
353
Tumor
0.1
361
Tumor
0.1
617
Tumor
0.1
1042
Normal
0.1
877
Tumor
0.1
113
Tumor
0.1
1041
Tumor
0.1
1025
Tumor
0.1
525
Tumor
0.1
436
Normal
0.1
874
Normal
0.1
925
Tumor
0.1
663
Tumor
0.0
641
Tumor
0.0
422
Normal
0.0
981
Tumor
0.0
738
Normal
0.0
742
Normal
0.0
471
Tumor
0.0
746
Normal
0.0
921
Tumor
0.0
391
Tumor
0.0
966
Normal
0.0
963
Tumor
0.0
463
Tumor
0.0
514
Normal
0.0
357
Tumor
0.0
1026
Normal
0.0
211
Tumor
0.0
472
Normal
0.0
483
Tumor
0.0
956
Normal
0.0
271
Tumor
0.0
451
Tumor
0.0
313
Tumor
0.0
421
Tumor
0.0
557
Tumor
0.0
983
Tumor
0.0
466
Normal
0.0
881
Tumor
0.0
873
Tumor
0.0
915
Tumor
0.0
724
Normal
0.0
695
Tumor
0.0
162
Normal
0.0
331
Tumor
0.0
286
Normal
0.0
756
Normal
0.0
714
Normal
0.0
456
Normal
0.0
212
Normal
0.0
185
Tumor
0.0
882
Normal
0.0
918
Normal
0.0
952
Normal
0.0
425
Tumor
0.0
493
Tumor
0.0
715
Tumor
0.0
1022
Normal
0.0
188
Normal
0.0
1044
Normal
0.0
497
Tumor
0.0
467
Tumor
0.0
484
Normal
0.0
447
Tumor
0.0
964
Normal
-0.1
618
Normal
-0.1
526
Normal
-0.1
697
Tumor
-0.1
1015
Tumor
-0.1
222
Normal
-0.1
355
Tumor
-0.1
868
Normal
-0.1
386
Normal
-0.1
462
Normal
-0.1
958
Normal
-0.1
1028
Normal
-0.1
975
Tumor
-0.1
968
Normal
-0.1
413
Tumor
-0.1
924
Normal
-0.1
917
Tumor
-0.1
721
Tumor
-0.1
516
Normal
-0.1
283
Tumor
-0.1
367
Tumor
-0.1
1046
Normal
-0.1
262
Normal
-0.1
312
Normal
-0.1
228
Normal
-0.1
414
Normal
-0.1
297
Tumor
-0.1
195
Tumor
-0.1
648
Normal
-0.1
538
Normal
-0.1
261
Tumor
-0.1
435
Tumor
-0.1
448
Normal
-0.1
976
Normal
-0.1
474
Normal
-0.1
387
Tumor
-0.1
192
Normal
-0.1
878
Normal
-0.1
452
Normal
-0.1
864
Normal
-0.1
272
Normal
-0.1
546
Normal
-0.1
217
Tumor
-0.1
415
Tumor
-0.1
722
Normal
-0.1
647
Tumor
-0.1
786
Normal
-0.1
982
Normal
-0.1
213
Tumor
-0.1
778
Normal
-0.1
375
Tumor
-0.1
823
Tumor
-0.1
524
Normal
-0.1
431
Tumor
-0.1
728
Normal
-0.1
861
Tumor
-0.1
884
Normal
-0.1
698
Normal
-0.1
944
Normal
-0.1
366
Normal
-0.1
464
Normal
-0.1
926
Normal
-0.1
311
Tumor
-0.1
412
Normal
-0.1
815
Tumor
-0.1
912
Normal
-0.1
171
Tumor
-0.1
136
Normal
-0.1
978
Normal
-0.1
817
Tumor
-0.2
432
Normal
-0.2
186
Normal
-0.2
937
Tumor
-0.2
258
Normal
-0.2
911
Tumor
-0.2
482
Normal
-0.2
635
Tumor
-0.2
224
Normal
-0.2
858
Normal
-0.2
268
Normal
-0.2
424
Normal
-0.2
284
Normal
-0.2
123
Tumor
-0.2
686
Normal
-0.2
916
Normal
-0.2
943
Tumor
-0.2
554
Normal
-0.2
267
Tumor
-0.2
112
Tumor
-0.2
433
Tumor
-0.2
434
Normal
-0.2
938
Normal
-0.2
534
Normal
-0.2
716
Normal
-0.2
135
Tumor
-0.2
922
Normal
-0.2
954
Normal
-0.2
478
Normal
-0.2
567
Tumor
-0.2
492
Normal
-0.2
571
Tumor
-0.2
364
Normal
-0.2
114
Normal
-0.2
142
Normal
-0.2
445
Tumor
-0.2
356
Normal
-0.2
468
Normal
-0.2
148
Normal
-0.2
696
Normal
-0.2
866
Normal
-0.2
363
Tumor
-0.2
494
Normal
-0.2
573
Tumor
-0.3
1016
Normal
-0.3
862
Normal
-0.3
362
Normal
-0.3
984
Normal
-0.3
662
Normal
-0.3
426
Normal
-0.3
563
Tumor
-0.3
278
Normal
-0.3
132
Normal
-0.3
146
Normal
-0.3
125
Tumor
-0.3
642
Normal
-0.3
427
Tumor
-0.3
394
Normal
-0.3
342
Normal
-0.3
744
Normal
-0.3
824
Normal
-0.3
498
Normal
-0.3
852
Normal
-0.3
227
Tumor
-0.3
126
Normal
-0.3
138
Normal
-0.3
816
Normal
-0.3
218
Normal
-0.3
528
Normal
-0.3
383
Tumor
-0.3
1032
Normal
-0.3
214
Normal
-0.3
385
Tumor
-0.3
428
Normal
-0.3
444
Normal
-0.3
446
Normal
-0.3
358
Normal
-0.3
628
Normal
-0.3
127
Tumor
-0.3
857
Tumor
-0.3
488
Normal
-0.3
671
Tumor
-0.3
351
Tumor
-0.3
392
Normal
-0.3
388
Normal
-0.3
664
Normal
-0.3
1014
Normal
-0.3
232
Normal
-0.3
111
Normal
-0.3
128
Normal
-0.3
298
Normal
-0.4
344
Normal
-0.4
231
Tumor
-0.4
851
Tumor
-0.4
396
Normal
-0.4
713
Tumor
-0.4
376
Normal
-0.4
665
Tumor
-0.4
616
Normal
-0.4
666
Normal
-0.4
196
Normal
-0.4
354
Normal
-0.4
124
Normal
-0.4
145
Tumor
-0.4
191
Tumor
-0.4
818
Normal
-0.4
368
Normal
-0.4
574
Normal
-0.4
491
Tumor
-0.4
636
Normal
-0.4
564
Normal
-0.4
568
Normal
-0.5
672
Normal
-0.5
332
Normal
-0.5
352
Normal
-0.5
661
Tumor
-0.5
314
Normal
-0.5
343
Tumor
-0.5
558
Normal
-0.5
384
Normal
-0.5
572
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.