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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF130 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
123.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
119.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
113.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
112.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
109.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
108.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
102.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
102.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
101.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
99.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
98.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
98.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
97.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
94.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
94.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
93.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
92.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
91.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
90.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
90.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
90.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
89.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
87.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
87.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
86.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
85.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
84.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
84.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
83.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
82.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
81.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
81.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
81.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
81.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
80.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
79.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
79.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
79.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
78.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
78.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
78.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
78.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
78.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
78.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
77.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
77.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
77.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
76.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
76.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
76.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
76.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
75.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
74.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
74.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
73.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
73.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
72.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
72.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
72.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
71.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
71.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
70.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
70.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
69.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
69.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
68.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
68.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
68.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
66.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
66.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
66.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
65.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
65.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
64.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
64.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
64.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
64.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
63.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
63.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
63.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
63.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
63.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
62.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
62.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
61.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
61.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
61.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
61.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
60.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
60.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
59.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
59.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
58.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
58.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
57.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
56.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
56.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
56.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
56.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
56.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
56.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
56.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
55.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
55.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
55.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
55.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
55.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
55.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
55.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
54.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
54.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
53.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
53.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
53.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
52.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
52.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
52.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
51.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
50.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
50.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
50.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
49.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
49.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
49.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
48.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
48.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
48.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
47.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
47.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
47.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
47.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
47.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
47.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
46.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
46.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
46.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
45.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
45.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
45.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
44.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
43.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
42.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
42.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
41.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
41.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
40.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
39.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
27.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF130 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.3
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
353.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
158.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
140.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
140.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
137.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
137.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
133.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
129.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
128.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
127.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
126.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
124.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
124.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
122.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
118.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
115.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
113.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
112.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
110.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
107.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
104.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
104.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
103.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
103.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
102.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
100.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
100.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
97.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
97.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
97.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
96.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
95.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
93.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
93.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
91.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
91.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
91.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
90.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
90.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
90.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
90.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
89.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
88.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
87.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
87.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
86.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
86.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
86.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
86.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
86.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
85.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
85.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
84.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
84.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
84.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
83.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
83.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
82.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
81.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
80.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
79.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
79.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
79.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
79.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
79.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
78.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
78.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
78.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
77.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
76.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
76.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
75.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
75.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
74.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
73.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
73.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
73.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
73.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
73.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
72.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
72.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
72.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
72.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
72.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
71.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
71.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
71.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
69.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
69.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
69.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
68.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
67.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
67.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
66.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
65.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
65.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
65.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
64.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
64.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
64.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
64.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
64.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
63.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
63.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
63.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
63.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
62.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
62.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
62.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
62.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
61.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
61.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
60.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
60.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
60.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
59.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
59.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
59.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
58.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
58.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
57.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
57.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
57.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
57.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
56.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
56.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
55.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
55.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
54.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
54.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
54.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
53.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
53.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
53.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
53.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
53.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
52.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
52.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
52.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
51.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
51.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
50.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
49.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
49.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
49.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
49.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
49.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
46.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
45.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
42.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
41.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
41.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
39.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
37.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.0
938
Normal
1.0
223
Tumor
0.8
944
Normal
0.8
952
Normal
0.7
515
Tumor
0.6
976
Normal
0.6
862
Normal
0.5
866
Normal
0.5
864
Normal
0.5
328
Normal
0.5
467
Tumor
0.5
823
Tumor
0.5
364
Normal
0.5
721
Tumor
0.5
573
Tumor
0.5
444
Normal
0.5
132
Normal
0.4
756
Normal
0.4
432
Normal
0.4
388
Normal
0.4
362
Normal
0.4
516
Normal
0.4
926
Normal
0.4
527
Tumor
0.4
125
Tumor
0.4
126
Normal
0.4
514
Normal
0.4
146
Normal
0.4
148
Normal
0.4
138
Normal
0.4
412
Normal
0.4
686
Normal
0.4
142
Normal
0.4
882
Normal
0.4
114
Normal
0.4
868
Normal
0.4
922
Normal
0.4
472
Normal
0.4
386
Normal
0.4
852
Normal
0.3
518
Normal
0.3
136
Normal
0.3
394
Normal
0.3
482
Normal
0.3
416
Normal
0.3
474
Normal
0.3
356
Normal
0.3
954
Normal
0.3
384
Normal
0.3
172
Normal
0.3
162
Normal
0.3
212
Normal
0.3
455
Tumor
0.3
1042
Normal
0.3
857
Tumor
0.3
884
Normal
0.3
523
Tumor
0.3
716
Normal
0.3
534
Normal
0.3
956
Normal
0.3
916
Normal
0.3
713
Tumor
0.3
558
Normal
0.3
481
Tumor
0.3
211
Tumor
0.3
816
Normal
0.3
492
Normal
0.3
1032
Normal
0.3
918
Normal
0.3
818
Normal
0.3
434
Normal
0.3
628
Normal
0.3
958
Normal
0.3
966
Normal
0.3
742
Normal
0.3
493
Tumor
0.3
192
Normal
0.2
963
Tumor
0.2
824
Normal
0.2
955
Tumor
0.2
528
Normal
0.2
224
Normal
0.2
616
Normal
0.2
196
Normal
0.2
366
Normal
0.2
572
Normal
0.2
574
Normal
0.2
392
Normal
0.2
728
Normal
0.2
137
Tumor
0.2
964
Normal
0.2
447
Tumor
0.2
498
Normal
0.2
978
Normal
0.2
526
Normal
0.2
563
Tumor
0.2
284
Normal
0.2
494
Normal
0.2
536
Normal
0.2
912
Normal
0.2
424
Normal
0.2
698
Normal
0.2
786
Normal
0.2
714
Normal
0.2
358
Normal
0.2
914
Normal
0.2
471
Tumor
0.2
851
Tumor
0.2
722
Normal
0.2
546
Normal
0.2
352
Normal
0.2
391
Tumor
0.2
738
Normal
0.2
464
Normal
0.1
913
Tumor
0.1
858
Normal
0.1
462
Normal
0.1
814
Normal
0.1
538
Normal
0.1
617
Tumor
0.1
568
Normal
0.1
723
Tumor
0.1
861
Tumor
0.1
446
Normal
0.1
662
Normal
0.1
128
Normal
0.1
283
Tumor
0.1
214
Normal
0.1
395
Tumor
0.1
456
Normal
0.1
491
Tumor
0.1
186
Normal
0.1
425
Tumor
0.1
488
Normal
0.1
564
Normal
0.1
1044
Normal
0.1
448
Normal
0.1
813
Tumor
0.1
311
Tumor
0.1
353
Tumor
0.1
524
Normal
0.1
648
Normal
0.1
428
Normal
0.1
975
Tumor
0.1
968
Normal
0.1
354
Normal
0.1
924
Normal
0.0
228
Normal
0.0
468
Normal
0.0
466
Normal
0.0
554
Normal
0.0
664
Normal
0.0
478
Normal
0.0
218
Normal
0.0
436
Normal
0.0
666
Normal
0.0
696
Normal
0.0
1046
Normal
0.0
642
Normal
0.0
375
Tumor
0.0
396
Normal
0.0
415
Tumor
0.0
636
Normal
0.0
867
Tumor
0.0
746
Normal
0.0
342
Normal
0.0
778
Normal
0.0
286
Normal
0.0
878
Normal
0.0
327
Tumor
0.0
222
Normal
0.0
421
Tumor
0.0
314
Normal
0.0
484
Normal
0.0
355
Tumor
0.0
298
Normal
0.0
1022
Normal
0.0
312
Normal
0.0
443
Tumor
0.0
874
Normal
0.0
278
Normal
0.0
917
Tumor
0.0
414
Normal
0.0
332
Normal
0.0
111
Normal
0.0
461
Tumor
0.0
344
Normal
-0.1
383
Tumor
-0.1
363
Tumor
-0.1
433
Tumor
-0.1
188
Normal
-0.1
385
Tumor
-0.1
685
Tumor
-0.1
744
Normal
-0.1
376
Normal
-0.1
618
Normal
-0.1
881
Tumor
-0.1
426
Normal
-0.1
513
Tumor
-0.1
213
Tumor
-0.1
1016
Normal
-0.1
545
Tumor
-0.1
984
Normal
-0.1
387
Tumor
-0.1
483
Tumor
-0.1
982
Normal
-0.1
1043
Tumor
-0.1
124
Normal
-0.1
497
Tumor
-0.1
487
Tumor
-0.1
817
Tumor
-0.1
195
Tumor
-0.1
113
Tumor
-0.1
1025
Tumor
-0.2
427
Tumor
-0.2
422
Normal
-0.2
411
Tumor
-0.2
1026
Normal
-0.2
1014
Normal
-0.2
672
Normal
-0.2
227
Tumor
-0.2
615
Tumor
-0.2
141
Tumor
-0.2
571
Tumor
-0.2
957
Tumor
-0.2
341
Tumor
-0.2
187
Tumor
-0.2
452
Normal
-0.2
697
Tumor
-0.2
297
Tumor
-0.2
112
Tumor
-0.3
413
Tumor
-0.3
525
Tumor
-0.3
641
Tumor
-0.3
755
Tumor
-0.3
445
Tumor
-0.3
737
Tumor
-0.3
1041
Tumor
-0.3
365
Tumor
-0.3
1028
Normal
-0.3
727
Tumor
-0.3
473
Tumor
-0.3
627
Tumor
-0.3
715
Tumor
-0.3
423
Tumor
-0.3
915
Tumor
-0.3
431
Tumor
-0.3
217
Tumor
-0.3
277
Tumor
-0.3
785
Tumor
-0.3
661
Tumor
-0.3
553
Tumor
-0.3
535
Tumor
-0.3
1031
Tumor
-0.3
127
Tumor
-0.4
557
Tumor
-0.4
877
Tumor
-0.4
145
Tumor
-0.4
533
Tumor
-0.4
815
Tumor
-0.4
1045
Tumor
-0.4
285
Tumor
-0.4
967
Tumor
-0.4
477
Tumor
-0.4
1027
Tumor
-0.4
393
Tumor
-0.4
883
Tumor
-0.4
451
Tumor
-0.4
724
Normal
-0.4
463
Tumor
-0.4
647
Tumor
-0.5
695
Tumor
-0.5
1021
Tumor
-0.5
367
Tumor
-0.5
517
Tumor
-0.5
1015
Tumor
-0.5
351
Tumor
-0.5
923
Tumor
-0.5
191
Tumor
-0.6
663
Tumor
-0.6
368
Normal
-0.6
965
Tumor
-0.6
777
Tumor
-0.6
925
Tumor
-0.6
537
Tumor
-0.6
863
Tumor
-0.6
671
Tumor
-0.6
745
Tumor
-0.6
1013
Tumor
-0.6
331
Tumor
-0.6
185
Tumor
-0.7
921
Tumor
-0.7
161
Tumor
-0.7
357
Tumor
-0.7
567
Tumor
-0.8
865
Tumor
-0.8
983
Tumor
-0.8
123
Tumor
-0.8
665
Tumor
-0.8
135
Tumor
-0.8
741
Tumor
-0.8
873
Tumor
-0.8
313
Tumor
-0.8
221
Tumor
-0.8
635
Tumor
-0.9
977
Tumor
-0.9
361
Tumor
-0.9
981
Tumor
-0.9
943
Tumor
-1.0
911
Tumor
-1.0
465
Tumor
-1.0
435
Tumor
-1.1
171
Tumor
-1.1
147
Tumor
-1.2
937
Tumor
-1.3
953
Tumor
-1.4
743
Tumor
-1.5
131
Tumor
-1.9
951
Tumor
-2.0
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
