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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PFDN1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
131.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
89.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
88.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
75.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
75.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
69.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
67.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
57.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
55.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
54.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
48.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
36.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PFDN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.7
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
66.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
51.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
43.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.3
473
Tumor
1.1
411
Tumor
1.1
745
Tumor
0.8
497
Tumor
0.8
1021
Tumor
0.8
965
Tumor
0.8
1027
Tumor
0.8
963
Tumor
0.8
211
Tumor
0.8
865
Tumor
0.7
285
Tumor
0.7
951
Tumor
0.7
737
Tumor
0.7
923
Tumor
0.7
957
Tumor
0.7
525
Tumor
0.7
953
Tumor
0.7
355
Tumor
0.6
227
Tumor
0.6
523
Tumor
0.6
724
Normal
0.6
533
Tumor
0.6
1043
Tumor
0.6
483
Tumor
0.6
147
Tumor
0.6
327
Tumor
0.5
131
Tumor
0.5
917
Tumor
0.5
363
Tumor
0.5
311
Tumor
0.5
535
Tumor
0.5
283
Tumor
0.5
513
Tumor
0.4
517
Tumor
0.4
695
Tumor
0.4
515
Tumor
0.4
617
Tumor
0.4
431
Tumor
0.4
851
Tumor
0.4
487
Tumor
0.4
537
Tumor
0.4
861
Tumor
0.3
516
Normal
0.3
447
Tumor
0.3
921
Tumor
0.3
553
Tumor
0.3
817
Tumor
0.3
685
Tumor
0.3
743
Tumor
0.3
777
Tumor
0.3
524
Normal
0.3
514
Normal
0.3
1022
Normal
0.3
1025
Tumor
0.3
493
Tumor
0.3
977
Tumor
0.3
857
Tumor
0.3
536
Normal
0.3
491
Tumor
0.3
881
Tumor
0.3
221
Tumor
0.2
492
Normal
0.2
958
Normal
0.2
567
Tumor
0.2
715
Tumor
0.2
415
Tumor
0.2
545
Tumor
0.2
478
Normal
0.2
877
Tumor
0.2
916
Normal
0.2
573
Tumor
0.2
1031
Tumor
0.2
975
Tumor
0.2
915
Tumor
0.2
527
Tumor
0.2
883
Tumor
0.2
663
Tumor
0.2
925
Tumor
0.2
785
Tumor
0.2
924
Normal
0.2
716
Normal
0.2
918
Normal
0.2
966
Normal
0.2
498
Normal
0.1
952
Normal
0.1
484
Normal
0.1
863
Tumor
0.1
212
Normal
0.1
538
Normal
0.1
435
Tumor
0.1
528
Normal
0.1
852
Normal
0.1
224
Normal
0.1
721
Tumor
0.1
823
Tumor
0.1
1026
Normal
0.1
518
Normal
0.1
1032
Normal
0.1
937
Tumor
0.1
964
Normal
0.1
873
Tumor
0.1
727
Tumor
0.1
135
Tumor
0.1
756
Normal
0.1
328
Normal
0.1
926
Normal
0.1
967
Tumor
0.1
943
Tumor
0.1
471
Tumor
0.1
488
Normal
0.1
661
Tumor
0.1
778
Normal
0.1
786
Normal
0.1
641
Tumor
0.1
571
Tumor
0.1
912
Normal
0.0
494
Normal
0.0
862
Normal
0.0
882
Normal
0.0
1028
Normal
0.0
558
Normal
0.0
413
Tumor
0.0
341
Tumor
0.0
416
Normal
0.0
978
Normal
0.0
1041
Tumor
0.0
922
Normal
0.0
534
Normal
0.0
353
Tumor
0.0
472
Normal
0.0
284
Normal
0.0
223
Tumor
0.0
448
Normal
0.0
741
Tumor
0.0
983
Tumor
0.0
976
Normal
0.0
277
Tumor
0.0
746
Normal
0.0
698
Normal
0.0
1044
Normal
0.0
385
Tumor
0.0
878
Normal
0.0
161
Tumor
0.0
228
Normal
0.0
984
Normal
0.0
818
Normal
0.0
412
Normal
0.0
911
Tumor
0.0
697
Tumor
0.0
477
Tumor
0.0
364
Normal
0.0
482
Normal
0.0
1014
Normal
0.0
723
Tumor
0.0
814
Normal
0.0
526
Normal
0.0
884
Normal
0.0
1042
Normal
0.0
722
Normal
0.0
913
Tumor
0.0
647
Tumor
0.0
665
Tumor
0.0
824
Normal
0.0
125
Tumor
-0.1
982
Normal
-0.1
696
Normal
-0.1
461
Tumor
-0.1
944
Normal
-0.1
815
Tumor
-0.1
816
Normal
-0.1
981
Tumor
-0.1
554
Normal
-0.1
686
Normal
-0.1
231
Tumor
-0.1
968
Normal
-0.1
261
Tumor
-0.1
445
Tumor
-0.1
356
Normal
-0.1
1016
Normal
-0.1
635
Tumor
-0.1
563
Tumor
-0.1
1046
Normal
-0.1
474
Normal
-0.1
557
Tumor
-0.1
375
Tumor
-0.1
866
Normal
-0.1
141
Tumor
-0.1
868
Normal
-0.1
1045
Tumor
-0.1
142
Normal
-0.1
112
Tumor
-0.1
755
Tumor
-0.1
213
Tumor
-0.1
938
Normal
-0.1
955
Tumor
-0.1
858
Normal
-0.1
313
Tumor
-0.1
427
Tumor
-0.1
714
Normal
-0.1
954
Normal
-0.1
425
Tumor
-0.1
864
Normal
-0.1
956
Normal
-0.2
451
Tumor
-0.2
257
Tumor
-0.2
286
Normal
-0.2
713
Tumor
-0.2
467
Tumor
-0.2
546
Normal
-0.2
354
Normal
-0.2
391
Tumor
-0.2
217
Tumor
-0.2
867
Tumor
-0.2
395
Tumor
-0.2
572
Normal
-0.2
481
Tumor
-0.2
386
Normal
-0.2
671
Tumor
-0.2
185
Tumor
-0.2
463
Tumor
-0.2
616
Normal
-0.2
357
Tumor
-0.2
444
Normal
-0.2
738
Normal
-0.2
455
Tumor
-0.2
813
Tumor
-0.2
383
Tumor
-0.2
465
Tumor
-0.2
351
Tumor
-0.3
462
Normal
-0.3
192
Normal
-0.3
874
Normal
-0.3
728
Normal
-0.3
433
Tumor
-0.3
394
Normal
-0.3
195
Tumor
-0.3
628
Normal
-0.3
137
Tumor
-0.3
443
Tumor
-0.3
123
Tumor
-0.3
1015
Tumor
-0.3
744
Normal
-0.3
466
Normal
-0.3
914
Normal
-0.3
666
Normal
-0.3
387
Tumor
-0.3
191
Tumor
-0.3
384
Normal
-0.3
742
Normal
-0.3
432
Normal
-0.3
392
Normal
-0.3
343
Tumor
-0.3
642
Normal
-0.3
423
Tumor
-0.3
136
Normal
-0.3
128
Normal
-0.3
146
Normal
-0.3
271
Tumor
-0.3
297
Tumor
-0.3
138
Normal
-0.4
376
Normal
-0.4
218
Normal
-0.4
396
Normal
-0.4
272
Normal
-0.4
352
Normal
-0.4
127
Tumor
-0.4
393
Tumor
-0.4
636
Normal
-0.4
672
Normal
-0.4
162
Normal
-0.4
664
Normal
-0.4
662
Normal
-0.4
436
Normal
-0.4
366
Normal
-0.4
362
Normal
-0.4
618
Normal
-0.4
388
Normal
-0.4
615
Tumor
-0.4
434
Normal
-0.4
331
Tumor
-0.4
262
Normal
-0.4
344
Normal
-0.4
424
Normal
-0.4
172
Normal
-0.5
214
Normal
-0.5
126
Normal
-0.5
171
Tumor
-0.5
421
Tumor
-0.5
564
Normal
-0.5
464
Normal
-0.5
456
Normal
-0.5
186
Normal
-0.5
358
Normal
-0.5
113
Tumor
-0.5
568
Normal
-0.5
267
Tumor
-0.5
332
Normal
-0.5
258
Normal
-0.5
342
Normal
-0.5
627
Tumor
-0.5
145
Tumor
-0.5
222
Normal
-0.5
446
Normal
-0.5
232
Normal
-0.5
268
Normal
-0.5
426
Normal
-0.5
188
Normal
-0.5
124
Normal
-0.5
132
Normal
-0.5
468
Normal
-0.5
574
Normal
-0.6
428
Normal
-0.6
365
Tumor
-0.6
114
Normal
-0.6
187
Tumor
-0.6
648
Normal
-0.6
312
Normal
-0.6
196
Normal
-0.6
368
Normal
-0.6
452
Normal
-0.6
361
Tumor
-0.6
148
Normal
-0.6
314
Normal
-0.7
367
Tumor
-0.7
278
Normal
-0.7
111
Normal
-0.7
414
Normal
-0.7
422
Normal
-0.7
298
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
