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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMA4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
70.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
56.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMA4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
671
Tumor
1.7
343
Tumor
1.7
367
Tumor
1.3
491
Tumor
1.2
545
Tumor
1.2
817
Tumor
1.2
713
Tumor
1.1
883
Tumor
1.1
421
Tumor
1.1
311
Tumor
1.1
161
Tumor
1.1
383
Tumor
1.1
823
Tumor
1.1
877
Tumor
1.0
981
Tumor
1.0
331
Tumor
0.9
385
Tumor
0.9
355
Tumor
0.9
697
Tumor
0.9
743
Tumor
0.9
213
Tumor
0.9
813
Tumor
0.9
627
Tumor
0.9
615
Tumor
0.9
647
Tumor
0.9
283
Tumor
0.9
957
Tumor
0.9
353
Tumor
0.9
185
Tumor
0.8
535
Tumor
0.8
1045
Tumor
0.8
695
Tumor
0.8
975
Tumor
0.8
715
Tumor
0.8
327
Tumor
0.8
455
Tumor
0.8
685
Tumor
0.7
363
Tumor
0.7
863
Tumor
0.7
977
Tumor
0.7
447
Tumor
0.7
917
Tumor
0.7
141
Tumor
0.7
261
Tumor
0.7
943
Tumor
0.7
923
Tumor
0.7
192
Normal
0.6
553
Tumor
0.6
517
Tumor
0.6
1015
Tumor
0.6
814
Normal
0.6
277
Tumor
0.6
431
Tumor
0.6
965
Tumor
0.5
427
Tumor
0.5
187
Tumor
0.5
525
Tumor
0.5
395
Tumor
0.5
145
Tumor
0.5
471
Tumor
0.5
223
Tumor
0.5
953
Tumor
0.5
557
Tumor
0.5
727
Tumor
0.5
665
Tumor
0.4
137
Tumor
0.4
227
Tumor
0.4
135
Tumor
0.4
444
Normal
0.4
513
Tumor
0.4
861
Tumor
0.4
191
Tumor
0.4
483
Tumor
0.4
171
Tumor
0.3
473
Tumor
0.3
915
Tumor
0.3
563
Tumor
0.3
515
Tumor
0.3
297
Tumor
0.3
411
Tumor
0.3
536
Normal
0.3
881
Tumor
0.3
777
Tumor
0.3
463
Tumor
0.3
493
Tumor
0.3
391
Tumor
0.3
465
Tumor
0.3
433
Tumor
0.3
745
Tumor
0.3
445
Tumor
0.3
195
Tumor
0.3
571
Tumor
0.3
492
Normal
0.2
127
Tumor
0.2
361
Tumor
0.2
1041
Tumor
0.2
112
Tumor
0.2
497
Tumor
0.2
967
Tumor
0.2
461
Tumor
0.2
423
Tumor
0.2
1013
Tumor
0.2
857
Tumor
0.2
523
Tumor
0.2
451
Tumor
0.2
785
Tumor
0.2
375
Tumor
0.2
527
Tumor
0.2
983
Tumor
0.2
387
Tumor
0.2
113
Tumor
0.2
231
Tumor
0.2
498
Normal
0.2
724
Normal
0.2
341
Tumor
0.2
313
Tumor
0.2
1025
Tumor
0.2
537
Tumor
0.2
672
Normal
0.2
533
Tumor
0.2
435
Tumor
0.1
635
Tumor
0.1
1043
Tumor
0.1
384
Normal
0.1
913
Tumor
0.1
365
Tumor
0.1
755
Tumor
0.1
257
Tumor
0.1
641
Tumor
0.1
413
Tumor
0.1
963
Tumor
0.1
211
Tumor
0.1
815
Tumor
0.1
393
Tumor
0.1
573
Tumor
0.0
477
Tumor
0.0
867
Tumor
0.0
741
Tumor
0.0
354
Normal
0.0
146
Normal
0.0
916
Normal
0.0
921
Tumor
0.0
478
Normal
0.0
617
Tumor
0.0
221
Tumor
0.0
951
Tumor
-0.1
937
Tumor
-0.1
663
Tumor
-0.1
572
Normal
-0.1
125
Tumor
-0.1
982
Normal
-0.1
467
Tumor
-0.1
1021
Tumor
-0.1
1031
Tumor
-0.1
285
Tumor
-0.1
925
Tumor
-0.1
538
Normal
-0.1
147
Tumor
-0.1
958
Normal
-0.1
1027
Tumor
-0.2
911
Tumor
-0.2
364
Normal
-0.2
516
Normal
-0.2
737
Tumor
-0.2
1044
Normal
-0.2
415
Tumor
-0.2
357
Tumor
-0.2
443
Tumor
-0.2
386
Normal
-0.3
312
Normal
-0.3
567
Tumor
-0.3
217
Tumor
-0.3
268
Normal
-0.3
524
Normal
-0.3
425
Tumor
-0.3
368
Normal
-0.3
188
Normal
-0.3
721
Tumor
-0.3
873
Tumor
-0.4
1032
Normal
-0.4
514
Normal
-0.4
267
Tumor
-0.4
126
Normal
-0.4
186
Normal
-0.4
865
Tumor
-0.4
284
Normal
-0.4
224
Normal
-0.4
131
Tumor
-0.4
984
Normal
-0.4
661
Tumor
-0.4
874
Normal
-0.4
394
Normal
-0.4
976
Normal
-0.4
464
Normal
-0.4
123
Tumor
-0.4
818
Normal
-0.4
332
Normal
-0.4
816
Normal
-0.4
851
Tumor
-0.4
416
Normal
-0.4
666
Normal
-0.4
558
Normal
-0.4
882
Normal
-0.5
472
Normal
-0.5
696
Normal
-0.5
744
Normal
-0.5
884
Normal
-0.5
448
Normal
-0.5
722
Normal
-0.5
487
Tumor
-0.5
412
Normal
-0.5
352
Normal
-0.5
396
Normal
-0.5
878
Normal
-0.5
344
Normal
-0.5
1016
Normal
-0.5
1028
Normal
-0.5
376
Normal
-0.5
228
Normal
-0.5
162
Normal
-0.5
214
Normal
-0.5
968
Normal
-0.5
148
Normal
-0.5
1014
Normal
-0.5
716
Normal
-0.5
1046
Normal
-0.5
351
Tumor
-0.5
392
Normal
-0.5
362
Normal
-0.5
466
Normal
-0.5
554
Normal
-0.5
484
Normal
-0.5
314
Normal
-0.6
172
Normal
-0.6
546
Normal
-0.6
662
Normal
-0.6
481
Tumor
-0.6
388
Normal
-0.6
366
Normal
-0.6
574
Normal
-0.6
488
Normal
-0.6
852
Normal
-0.6
978
Normal
-0.6
342
Normal
-0.6
132
Normal
-0.6
954
Normal
-0.6
196
Normal
-0.6
328
Normal
-0.6
428
Normal
-0.6
786
Normal
-0.6
124
Normal
-0.6
714
Normal
-0.6
422
Normal
-0.6
664
Normal
-0.6
136
Normal
-0.6
938
Normal
-0.6
526
Normal
-0.6
912
Normal
-0.6
686
Normal
-0.6
456
Normal
-0.6
356
Normal
-0.6
494
Normal
-0.6
218
Normal
-0.6
698
Normal
-0.6
138
Normal
-0.6
424
Normal
-0.6
142
Normal
-0.6
944
Normal
-0.6
534
Normal
-0.7
914
Normal
-0.7
868
Normal
-0.7
756
Normal
-0.7
278
Normal
-0.7
212
Normal
-0.7
446
Normal
-0.7
482
Normal
-0.7
474
Normal
-0.7
414
Normal
-0.7
528
Normal
-0.7
778
Normal
-0.7
114
Normal
-0.7
426
Normal
-0.7
866
Normal
-0.7
956
Normal
-0.7
271
Tumor
-0.7
298
Normal
-0.7
964
Normal
-0.7
1022
Normal
-0.7
824
Normal
-0.7
642
Normal
-0.7
468
Normal
-0.7
858
Normal
-0.7
434
Normal
-0.8
286
Normal
-0.8
111
Normal
-0.8
742
Normal
-0.8
952
Normal
-0.8
628
Normal
-0.8
222
Normal
-0.8
262
Normal
-0.8
618
Normal
-0.8
1042
Normal
-0.8
636
Normal
-0.8
128
Normal
-0.8
926
Normal
-0.8
272
Normal
-0.8
518
Normal
-0.8
922
Normal
-0.8
462
Normal
-0.9
432
Normal
-0.9
918
Normal
-0.9
258
Normal
-0.9
452
Normal
-0.9
864
Normal
-0.9
924
Normal
-0.9
648
Normal
-0.9
232
Normal
-0.9
738
Normal
-0.9
568
Normal
-0.9
436
Normal
-0.9
723
Tumor
-0.9
966
Normal
-0.9
1026
Normal
-0.9
358
Normal
-0.9
564
Normal
-1.0
746
Normal
-1.0
728
Normal
-1.0
862
Normal
-1.0
616
Normal
-1.0
955
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
