We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GMDS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
154.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
123.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
114.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
93.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
78.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
77.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
77.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
75.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
71.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
70.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
64.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
59.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
57.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
55.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
53.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
45.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
44.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
39.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
38.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GMDS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
74.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
395
Tumor
2.1
917
Tumor
1.9
311
Tumor
1.9
545
Tumor
1.3
285
Tumor
1.2
817
Tumor
1.1
1021
Tumor
1.1
951
Tumor
1.0
497
Tumor
0.9
527
Tumor
0.9
385
Tumor
0.8
211
Tumor
0.8
671
Tumor
0.8
557
Tumor
0.7
1041
Tumor
0.7
975
Tumor
0.7
131
Tumor
0.7
553
Tumor
0.7
883
Tumor
0.7
455
Tumor
0.7
685
Tumor
0.6
433
Tumor
0.6
977
Tumor
0.5
697
Tumor
0.5
217
Tumor
0.5
471
Tumor
0.5
865
Tumor
0.5
923
Tumor
0.5
331
Tumor
0.5
741
Tumor
0.4
955
Tumor
0.4
1015
Tumor
0.4
957
Tumor
0.4
983
Tumor
0.4
145
Tumor
0.4
416
Normal
0.4
1031
Tumor
0.3
135
Tumor
0.3
617
Tumor
0.3
221
Tumor
0.3
516
Normal
0.3
125
Tumor
0.3
956
Normal
0.3
573
Tumor
0.3
112
Tumor
0.3
877
Tumor
0.3
447
Tumor
0.2
271
Tumor
0.2
952
Normal
0.2
537
Tumor
0.2
635
Tumor
0.2
981
Tumor
0.2
467
Tumor
0.2
353
Tumor
0.2
916
Normal
0.2
852
Normal
0.2
663
Tumor
0.2
1022
Normal
0.2
966
Normal
0.2
861
Tumor
0.2
925
Tumor
0.2
261
Tumor
0.2
778
Normal
0.2
413
Tumor
0.2
728
Normal
0.1
284
Normal
0.1
571
Tumor
0.1
1027
Tumor
0.1
213
Tumor
0.1
868
Normal
0.1
415
Tumor
0.1
513
Tumor
0.1
493
Tumor
0.1
982
Normal
0.1
738
Normal
0.1
823
Tumor
0.1
937
Tumor
0.1
223
Tumor
0.1
375
Tumor
0.1
228
Normal
0.1
558
Normal
0.1
881
Tumor
0.1
1044
Normal
0.1
474
Normal
0.1
777
Tumor
0.1
431
Tumor
0.1
212
Normal
0.1
214
Normal
0.1
745
Tumor
0.1
492
Normal
0.1
715
Tumor
0.1
231
Tumor
0.1
918
Normal
0.1
538
Normal
0.0
421
Tumor
0.0
1026
Normal
0.0
536
Normal
0.0
864
Normal
0.0
127
Tumor
0.0
554
Normal
0.0
286
Normal
0.0
661
Tumor
0.0
1028
Normal
0.0
756
Normal
0.0
1042
Normal
0.0
1025
Tumor
0.0
526
Normal
0.0
567
Tumor
0.0
721
Tumor
0.0
386
Normal
0.0
1045
Tumor
0.0
958
Normal
0.0
867
Tumor
0.0
412
Normal
0.0
816
Normal
0.0
126
Normal
0.0
722
Normal
0.0
524
Normal
0.0
873
Tumor
0.0
924
Normal
0.0
815
Tumor
0.0
964
Normal
0.0
434
Normal
0.0
968
Normal
0.0
546
Normal
0.0
976
Normal
0.0
188
Normal
0.0
312
Normal
0.0
944
Normal
0.0
874
Normal
0.0
1032
Normal
0.0
698
Normal
0.0
137
Tumor
0.0
224
Normal
0.0
478
Normal
0.0
978
Normal
0.0
422
Normal
0.0
387
Tumor
0.0
171
Tumor
-0.1
355
Tumor
-0.1
714
Normal
-0.1
851
Tumor
-0.1
915
Tumor
-0.1
136
Normal
-0.1
514
Normal
-0.1
746
Normal
-0.1
686
Normal
-0.1
984
Normal
-0.1
494
Normal
-0.1
1014
Normal
-0.1
298
Normal
-0.1
696
Normal
-0.1
862
Normal
-0.1
257
Tumor
-0.1
866
Normal
-0.1
484
Normal
-0.1
462
Normal
-0.1
278
Normal
-0.1
518
Normal
-0.1
472
Normal
-0.1
466
Normal
-0.1
528
Normal
-0.1
146
Normal
-0.1
272
Normal
-0.1
364
Normal
-0.1
574
Normal
-0.1
616
Normal
-0.1
356
Normal
-0.1
456
Normal
-0.1
138
Normal
-0.1
926
Normal
-0.1
785
Tumor
-0.1
627
Tumor
-0.1
473
Tumor
-0.1
218
Normal
-0.1
737
Tumor
-0.1
443
Tumor
-0.1
564
Normal
-0.1
1016
Normal
-0.1
113
Tumor
-0.1
716
Normal
-0.2
628
Normal
-0.2
922
Normal
-0.2
414
Normal
-0.2
396
Normal
-0.2
498
Normal
-0.2
128
Normal
-0.2
912
Normal
-0.2
383
Tumor
-0.2
914
Normal
-0.2
448
Normal
-0.2
436
Normal
-0.2
191
Tumor
-0.2
882
Normal
-0.2
362
Normal
-0.2
195
Tumor
-0.2
953
Tumor
-0.2
111
Normal
-0.2
452
Normal
-0.2
954
Normal
-0.2
426
Normal
-0.2
615
Tumor
-0.2
468
Normal
-0.2
283
Tumor
-0.2
534
Normal
-0.2
444
Normal
-0.2
376
Normal
-0.2
132
Normal
-0.2
424
Normal
-0.2
328
Normal
-0.2
818
Normal
-0.2
884
Normal
-0.2
114
Normal
-0.2
262
Normal
-0.2
327
Tumor
-0.2
432
Normal
-0.2
618
Normal
-0.2
642
Normal
-0.2
332
Normal
-0.2
172
Normal
-0.2
515
Tumor
-0.2
786
Normal
-0.2
662
Normal
-0.2
938
Normal
-0.2
394
Normal
-0.2
351
Tumor
-0.2
672
Normal
-0.2
491
Tumor
-0.2
824
Normal
-0.2
392
Normal
-0.3
563
Tumor
-0.3
352
Normal
-0.3
258
Normal
-0.3
483
Tumor
-0.3
568
Normal
-0.3
192
Normal
-0.3
572
Normal
-0.3
361
Tumor
-0.3
162
Normal
-0.3
268
Normal
-0.3
314
Normal
-0.3
124
Normal
-0.3
742
Normal
-0.3
185
Tumor
-0.3
196
Normal
-0.3
142
Normal
-0.3
425
Tumor
-0.3
186
Normal
-0.3
967
Tumor
-0.3
743
Tumor
-0.3
464
Normal
-0.3
636
Normal
-0.3
648
Normal
-0.3
482
Normal
-0.3
963
Tumor
-0.3
297
Tumor
-0.3
147
Tumor
-0.3
187
Tumor
-0.3
858
Normal
-0.4
148
Normal
-0.4
755
Tumor
-0.4
525
Tumor
-0.4
232
Normal
-0.4
488
Normal
-0.4
445
Tumor
-0.4
461
Tumor
-0.4
222
Normal
-0.4
313
Tumor
-0.4
446
Normal
-0.4
428
Normal
-0.4
477
Tumor
-0.4
267
Tumor
-0.4
523
Tumor
-0.4
1046
Normal
-0.4
921
Tumor
-0.4
857
Tumor
-0.4
388
Normal
-0.4
664
Normal
-0.4
666
Normal
-0.4
814
Normal
-0.4
123
Tumor
-0.4
713
Tumor
-0.4
878
Normal
-0.4
481
Tumor
-0.4
366
Normal
-0.4
863
Tumor
-0.4
723
Tumor
-0.4
1043
Tumor
-0.5
943
Tumor
-0.5
344
Normal
-0.5
342
Normal
-0.5
384
Normal
-0.5
451
Tumor
-0.5
813
Tumor
-0.5
358
Normal
-0.5
724
Normal
-0.5
744
Normal
-0.5
343
Tumor
-0.5
368
Normal
-0.5
641
Tumor
-0.5
227
Tumor
-0.6
277
Tumor
-0.6
354
Normal
-0.6
423
Tumor
-0.6
965
Tumor
-0.6
913
Tumor
-0.6
911
Tumor
-0.6
665
Tumor
-0.7
141
Tumor
-0.7
727
Tumor
-0.7
391
Tumor
-0.7
427
Tumor
-0.7
535
Tumor
-0.7
341
Tumor
-0.8
161
Tumor
-0.8
365
Tumor
-0.8
357
Tumor
-0.8
1013
Tumor
-0.8
411
Tumor
-0.8
393
Tumor
-0.8
363
Tumor
-0.8
465
Tumor
-0.9
695
Tumor
-0.9
533
Tumor
-0.9
463
Tumor
-0.9
367
Tumor
-0.9
647
Tumor
-1.0
435
Tumor
-1.1
517
Tumor
-1.2
487
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
