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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM30A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
74.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
71.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
65.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
57.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
43.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
39.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM30A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.2
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
104.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
77.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
72.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
68.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
64.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
64.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
64.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
58.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
56.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
54.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
53.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
51.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
51.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
51.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
45.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
44.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
43.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
41.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
40.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
39.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
39.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
36.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
36.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.3
742
Normal
0.8
648
Normal
0.7
884
Normal
0.6
428
Normal
0.6
362
Normal
0.6
464
Normal
0.6
132
Normal
0.5
863
Tumor
0.5
436
Normal
0.5
572
Normal
0.5
136
Normal
0.5
568
Normal
0.5
664
Normal
0.5
424
Normal
0.5
462
Normal
0.5
882
Normal
0.5
312
Normal
0.5
874
Normal
0.5
481
Tumor
0.5
366
Normal
0.5
414
Normal
0.5
422
Normal
0.5
1046
Normal
0.5
728
Normal
0.4
912
Normal
0.4
484
Normal
0.4
746
Normal
0.4
526
Normal
0.4
314
Normal
0.4
261
Tumor
0.4
356
Normal
0.4
662
Normal
0.4
666
Normal
0.4
786
Normal
0.4
426
Normal
0.4
968
Normal
0.4
564
Normal
0.4
868
Normal
0.4
862
Normal
0.4
393
Tumor
0.4
866
Normal
0.4
878
Normal
0.4
298
Normal
0.4
738
Normal
0.4
432
Normal
0.4
222
Normal
0.4
916
Normal
0.4
824
Normal
0.4
396
Normal
0.4
1016
Normal
0.4
647
Tumor
0.4
745
Tumor
0.4
172
Normal
0.4
816
Normal
0.3
448
Normal
0.3
394
Normal
0.3
671
Tumor
0.3
696
Normal
0.3
777
Tumor
0.3
514
Normal
0.3
952
Normal
0.3
491
Tumor
0.3
615
Tumor
0.3
938
Normal
0.3
926
Normal
0.3
917
Tumor
0.3
518
Normal
0.3
964
Normal
0.3
111
Normal
0.3
364
Normal
0.3
196
Normal
0.3
1044
Normal
0.3
534
Normal
0.3
722
Normal
0.3
138
Normal
0.3
114
Normal
0.3
412
Normal
0.3
376
Normal
0.3
416
Normal
0.3
1022
Normal
0.3
272
Normal
0.3
778
Normal
0.3
258
Normal
0.3
211
Tumor
0.3
125
Tumor
0.3
358
Normal
0.3
918
Normal
0.3
922
Normal
0.3
286
Normal
0.3
328
Normal
0.3
472
Normal
0.3
192
Normal
0.3
311
Tumor
0.2
574
Normal
0.2
474
Normal
0.2
148
Normal
0.2
698
Normal
0.2
278
Normal
0.2
558
Normal
0.2
494
Normal
0.2
353
Tumor
0.2
395
Tumor
0.2
466
Normal
0.2
456
Normal
0.2
1028
Normal
0.2
388
Normal
0.2
864
Normal
0.2
1032
Normal
0.2
482
Normal
0.2
352
Normal
0.2
723
Tumor
0.2
212
Normal
0.2
368
Normal
0.2
228
Normal
0.2
755
Tumor
0.2
218
Normal
0.2
924
Normal
0.2
146
Normal
0.2
714
Normal
0.2
162
Normal
0.2
713
Tumor
0.2
128
Normal
0.2
618
Normal
0.2
386
Normal
0.2
976
Normal
0.2
342
Normal
0.2
966
Normal
0.2
573
Tumor
0.2
661
Tumor
0.2
546
Normal
0.2
978
Normal
0.2
1014
Normal
0.2
528
Normal
0.1
567
Tumor
0.1
332
Normal
0.1
756
Normal
0.1
186
Normal
0.1
467
Tumor
0.1
672
Normal
0.1
1042
Normal
0.1
447
Tumor
0.1
642
Normal
0.1
914
Normal
0.1
817
Tumor
0.1
217
Tumor
0.1
911
Tumor
0.1
468
Normal
0.1
433
Tumor
0.1
686
Normal
0.1
284
Normal
0.1
516
Normal
0.1
616
Normal
0.1
268
Normal
0.1
488
Normal
0.1
944
Normal
0.1
126
Normal
0.1
628
Normal
0.1
982
Normal
0.1
915
Tumor
0.1
858
Normal
0.1
384
Normal
0.1
137
Tumor
0.1
956
Normal
0.1
413
Tumor
0.1
354
Normal
0.1
214
Normal
0.1
977
Tumor
0.1
877
Tumor
0.1
1026
Normal
0.1
392
Normal
0.0
327
Tumor
0.0
421
Tumor
0.0
257
Tumor
0.0
142
Normal
0.0
983
Tumor
0.0
716
Normal
0.0
195
Tumor
0.0
232
Normal
0.0
984
Normal
0.0
554
Normal
0.0
744
Normal
0.0
145
Tumor
0.0
446
Normal
0.0
262
Normal
0.0
818
Normal
0.0
813
Tumor
0.0
188
Normal
0.0
365
Tumor
0.0
223
Tumor
0.0
452
Normal
0.0
527
Tumor
0.0
958
Normal
0.0
981
Tumor
0.0
141
Tumor
0.0
921
Tumor
0.0
344
Normal
0.0
636
Normal
0.0
743
Tumor
0.0
663
Tumor
0.0
665
Tumor
0.0
814
Normal
0.0
423
Tumor
0.0
383
Tumor
0.0
361
Tumor
0.0
823
Tumor
0.0
147
Tumor
0.0
425
Tumor
-0.1
434
Normal
-0.1
523
Tumor
-0.1
955
Tumor
-0.1
724
Normal
-0.1
498
Normal
-0.1
331
Tumor
-0.1
363
Tumor
-0.1
187
Tumor
-0.1
191
Tumor
-0.1
492
Normal
-0.1
851
Tumor
-0.1
375
Tumor
-0.1
741
Tumor
-0.1
533
Tumor
-0.1
343
Tumor
-0.1
524
Normal
-0.1
627
Tumor
-0.1
224
Normal
-0.1
563
Tumor
-0.1
367
Tumor
-0.1
852
Normal
-0.1
463
Tumor
-0.1
861
Tumor
-0.1
415
Tumor
-0.1
697
Tumor
-0.1
283
Tumor
-0.2
427
Tumor
-0.2
461
Tumor
-0.2
867
Tumor
-0.2
943
Tumor
-0.2
487
Tumor
-0.2
213
Tumor
-0.2
297
Tumor
-0.2
515
Tumor
-0.2
967
Tumor
-0.2
1025
Tumor
-0.2
975
Tumor
-0.2
431
Tumor
-0.2
727
Tumor
-0.2
497
Tumor
-0.2
815
Tumor
-0.2
737
Tumor
-0.2
857
Tumor
-0.2
873
Tumor
-0.2
455
Tumor
-0.2
444
Normal
-0.2
113
Tumor
-0.2
545
Tumor
-0.2
435
Tumor
-0.2
721
Tumor
-0.3
185
Tumor
-0.3
1021
Tumor
-0.3
161
Tumor
-0.3
525
Tumor
-0.3
313
Tumor
-0.3
285
Tumor
-0.3
391
Tumor
-0.3
538
Normal
-0.3
913
Tumor
-0.3
536
Normal
-0.3
925
Tumor
-0.3
1045
Tumor
-0.3
1031
Tumor
-0.3
387
Tumor
-0.3
1041
Tumor
-0.3
124
Normal
-0.3
277
Tumor
-0.3
954
Normal
-0.3
1043
Tumor
-0.3
571
Tumor
-0.3
221
Tumor
-0.3
923
Tumor
-0.3
963
Tumor
-0.4
883
Tumor
-0.4
493
Tumor
-0.4
451
Tumor
-0.4
351
Tumor
-0.4
1015
Tumor
-0.4
1027
Tumor
-0.4
617
Tumor
-0.4
937
Tumor
-0.4
557
Tumor
-0.4
535
Tumor
-0.4
953
Tumor
-0.4
355
Tumor
-0.4
267
Tumor
-0.4
881
Tumor
-0.4
1013
Tumor
-0.4
271
Tumor
-0.4
341
Tumor
-0.4
957
Tumor
-0.4
385
Tumor
-0.5
123
Tumor
-0.5
635
Tumor
-0.5
537
Tumor
-0.5
483
Tumor
-0.5
357
Tumor
-0.5
785
Tumor
-0.5
553
Tumor
-0.5
411
Tumor
-0.5
445
Tumor
-0.5
865
Tumor
-0.5
478
Normal
-0.5
131
Tumor
-0.5
965
Tumor
-0.6
171
Tumor
-0.6
227
Tumor
-0.6
465
Tumor
-0.6
471
Tumor
-0.6
513
Tumor
-0.6
112
Tumor
-0.6
951
Tumor
-0.6
685
Tumor
-0.6
127
Tumor
-0.7
695
Tumor
-0.7
641
Tumor
-0.7
473
Tumor
-0.8
477
Tumor
-0.8
443
Tumor
-0.8
231
Tumor
-0.8
517
Tumor
-0.9
715
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
