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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS12 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1969.6
Number of samples
349
Samples
Sample
Description
TPM
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
5851.6
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
5757.3
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
5708.8
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
5520.1
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
5167.6
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
5096.5
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
5040.5
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
4962.2
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
4839.8
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
4658.7
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
4578.5
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
4539.1
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
4532.3
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
4448.7
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
4361.8
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
4322.1
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
4284.4
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
4210.1
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
4174.5
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
4152.1
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
4147.3
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
4091.0
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
4016.1
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
3993.6
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
3881.2
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
3862.1
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
3811.7
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
3783.5
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
3752.4
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
3687.5
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
3594.7
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
3556.8
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
3543.5
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
3540.1
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
3502.4
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
3490.3
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
3483.3
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
3425.9
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
3405.4
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
3374.7
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
3356.2
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
3286.7
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
3263.1
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
3225.6
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
3183.6
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
3153.3
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
3137.7
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
3100.3
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
3081.1
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
3079.5
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
3075.8
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
3066.1
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
3051.6
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
3008.4
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
2990.0
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
2953.2
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
2926.6
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
2913.8
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
2895.8
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
2882.0
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
2875.8
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
2852.2
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
2815.7
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
2804.8
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
2778.2
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
2772.1
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
2734.3
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
2730.2
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
2705.4
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
2704.5
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
2686.2
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
2644.3
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
2624.5
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
2623.7
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
2599.5
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
2561.1
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
2524.5
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
2501.4
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
2492.4
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
2484.7
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
2472.6
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
2470.4
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
2470.1
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
2460.9
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
2460.8
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
2438.9
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
2433.8
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
2431.3
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
2417.0
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
2415.6
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
2411.7
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
2372.8
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
2354.4
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
2320.8
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
2317.0
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
2298.0
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
2287.0
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
2277.3
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
2261.4
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
2259.5
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
2259.3
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
2245.8
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
2239.8
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
2228.9
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
2227.0
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
2224.3
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
2222.3
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
2205.4
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
2201.6
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
2182.6
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
2175.6
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
2172.6
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
2161.3
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
2160.6
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
2159.8
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
2144.6
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
2144.4
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
2138.9
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
2135.0
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
2122.5
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
2122.2
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
2087.2
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
2084.9
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
2079.4
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
2078.0
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
2070.1
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
2065.3
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
2053.5
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
2050.5
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
2046.9
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
2044.4
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
2043.7
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
2026.1
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
2025.1
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
2018.9
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
2005.6
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
1997.5
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
1996.7
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
1990.0
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
1972.4
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
1953.4
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
1948.6
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
1943.3
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
1934.5
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
1923.2
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
1922.2
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
1920.6
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
1914.9
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
1910.2
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
1904.3
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
1897.8
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
1893.2
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
1893.1
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
1885.3
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
1878.1
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
1869.9
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
1830.9
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
1829.5
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
1829.0
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
1829.0
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
1817.3
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
1805.2
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
1782.1
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
1779.8
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
1774.4
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
1754.6
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
1748.2
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
1744.5
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
1739.3
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
1731.2
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
1728.3
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
1722.9
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
1719.8
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
1718.2
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
1717.3
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
1690.5
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
1683.6
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
1683.1
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
1682.1
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
1680.0
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
1674.1
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
1666.7
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
1662.3
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
1660.1
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
1629.7
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
1627.7
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
1623.4
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
1621.5
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
1619.4
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
1617.7
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
1612.7
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
1608.6
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
1607.8
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
1606.8
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
1601.0
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
1585.0
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
1582.2
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
1578.2
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
1577.4
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
1569.8
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
1566.4
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
1558.6
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
1551.2
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
1544.1
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
1532.1
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
1523.0
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
1521.0
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
1502.5
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
1496.1
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
1491.7
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
1480.3
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
1470.5
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
1460.7
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
1460.6
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
1440.6
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
1439.2
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
1435.3
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
1435.2
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
1427.1
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
1419.3
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
1419.0
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
1412.9
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
1408.4
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
1405.0
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
1403.8
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
1402.5
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
1388.9
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
1379.9
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
1365.5
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
1361.9
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
1359.2
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1353.1
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
1347.4
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
1346.7
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
1344.8
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
1343.1
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
1338.6
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
1336.5
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
1335.0
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
1334.9
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
1331.0
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
1328.9
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
1326.8
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
1318.1
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
1314.8
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
1308.9
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
1295.5
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
1289.4
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
1285.6
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
1278.5
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
1278.0
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
1273.7
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
1260.7
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1258.5
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
1252.1
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
1249.0
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
1243.9
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
1241.3
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
1233.4
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
1231.1
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
1230.2
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
1215.3
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1201.9
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
1195.5
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
1195.0
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
1190.6
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
1189.3
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1186.1
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1179.4
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
1177.4
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
1164.1
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
1153.4
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
1152.8
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
1151.1
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
1150.2
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
1147.5
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
1142.9
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
1125.3
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
1114.6
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
1102.3
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
1082.3
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
1077.3
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
1071.6
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
1065.1
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
1061.9
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
1057.6
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
1050.4
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
1035.4
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
1028.2
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
1021.1
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
1020.7
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
1020.1
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
1015.5
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
1010.8
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
1010.2
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
1008.2
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
987.2
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
983.5
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
972.4
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
968.6
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
957.4
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
954.8
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
952.9
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
946.7
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
934.4
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
922.3
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
919.0
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
901.7
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
885.7
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
884.5
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
879.6
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
879.6
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
877.1
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
853.2
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
852.4
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
835.9
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
835.1
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
834.0
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
833.4
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
832.9
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
831.4
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
826.3
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
821.5
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
808.0
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
796.4
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
782.8
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
781.7
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
764.7
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
749.2
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
740.2
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
733.4
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
726.3
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
724.2
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
722.5
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
717.0
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
705.4
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
702.0
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
688.7
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
687.6
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
687.5
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
678.9
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
674.9
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
671.0
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
654.6
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
645.8
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
605.7
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
577.6
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
493.3
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS12 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2862.8
Number of samples
81
Samples
Sample
Description
TPM
DO46402
0 years, female, NA, stage:III, dead, 511 days
9424.0
DO46342
0 years, female, NA, stage:III, dead, 1398 days
7252.1
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
7242.2
DO46591
0 years, female, NA, stage:III, dead, 195 days
7223.2
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
6992.0
DO46356
0 years, female, NA, stage:III, dead, 911 days
6223.5
DO46330
0 years, female, NA, stage:III, dead, 684 days
5667.5
DO46352
0 years, female, NA, stage:III, dead, 677 days
5575.6
DO46390
0 years, female, NA, stage:III, dead, 374 days
5160.1
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
4642.0
DO46350
0 years, female, NA, stage:III, dead, 886 days
4549.7
DO46333
0 years, female, NA, stage:III, dead, 359 days
4547.2
DO46370
0 years, female, NA, stage:III, dead, 1727 days
4447.2
DO46384
0 years, female, NA, stage:III, dead, 614 days
4352.9
DO46328
0 years, female, NA, stage:III, dead, 972 days
4041.2
DO46326
0 years, female, NA, stage:III, dead, 701 days
3984.3
DO46581
0 years, female, NA, stage:III, dead, 408 days
3880.0
DO46576
0 years, female, NA, stage:III, alive, 133 days
3846.6
DO46404
0 years, female, NA, stage:III, dead, 690 days
3729.0
DO46388
0 years, female, NA, stage:III, dead, 413 days
3685.4
DO46566
0 years, female, NA, stage:III, dead, 673 days
3676.3
DO46443
0 years, female, NA, stage:III, dead, 2464 days
3608.6
DO46338
0 years, female, NA, stage:III, dead, 596 days
3515.4
DO46366
0 years, female, NA, stage:III, dead, 2054 days
3264.6
DO46398
0 years, female, NA, stage:III, alive, 437 days
3105.2
DO46368
0 years, female, NA, stage:III, dead, 2879 days
3096.3
DO46588
0 years, female, NA, stage:III, dead, 438 days
3071.3
DO46597
0 years, female, NA, stage:III, dead, 393 days
2965.8
DO46518
0 years, female, NA, stage:III, alive, 2960 days
2925.2
DO46551
0 years, female, NA, stage:III, dead, 1055 days
2816.1
DO46508
0 years, female, NA, stage:III, dead, 2101 days
2692.4
DO46568
0 years, female, NA, stage:III, dead, 320 days
2621.4
DO46468
0 years, female, NA, stage:III, alive, 2776 days
2583.6
DO46602
0 years, female, NA, stage:III, dead, 205 days
2561.5
DO46453
0 years, female, NA, stage:III, dead, 3294 days
2548.4
DO46374
0 years, female, NA, stage:III, dead, 1409 days
2450.0
DO46334
0 years, female, NA, stage:III, dead, 496 days
2418.3
DO46336
0 years, female, NA, stage:IV, dead, 664 days
2369.0
DO46400
0 years, female, NA, stage:III, dead, 719 days
2363.2
DO46362
0 years, female, NA, stage:III, dead, 1639 days
2358.6
DO46331
0 years, female, NA, stage:III, dead, 612 days
2344.6
DO46611
0 years, female, NA, stage:III, dead, 734 days
2291.4
DO46436
0 years, female, NA, stage:III, alive, 3193 days
2283.6
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
2226.2
DO46364
0 years, female, NA, stage:III, dead, 806 days
2194.1
DO46412
0 years, female, NA, stage:III, dead, 597 days
2176.0
DO46358
0 years, female, NA, stage:III, dead, 423 days
2135.9
DO46396
0 years, female, NA, stage:III, dead, 583 days
2089.9
DO46432
0 years, female, NA, stage:III, alive, 2218 days
2068.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
2043.7
DO46386
0 years, female, NA, stage:III, dead, 1162 days
2022.0
DO46325
0 years, female, NA, stage:III, dead, 477 days
2017.0
DO46493
0 years, female, NA, stage:IV, alive, 839 days
1982.0
DO46376
0 years, female, NA, stage:III, dead, 1430 days
1959.7
DO46392
0 years, female, NA, stage:III, dead, 628 days
1874.4
DO46408
0 years, female, NA, stage:III, dead, 489 days
1852.6
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
1851.0
DO46382
0 years, female, NA, stage:IV, dead, 311 days
1753.6
DO46606
0 years, female, NA, stage:III, alive, 804 days
1694.3
DO46463
0 years, female, NA, stage:III, dead, 2451 days
1688.9
DO46380
0 years, female, NA, stage:III, dead, 1423 days
1669.1
DO46372
0 years, female, NA, stage:III, dead, 1326 days
1657.2
DO46561
0 years, female, NA, stage:III, dead, 195 days
1619.1
DO46327
0 years, female, NA, stage:III, dead, 184 days
1516.2
DO46348
0 years, female, NA, stage:IV, dead, 287 days
1507.7
DO46448
0 years, female, NA, stage:III, dead, 654 days
1491.6
DO46586
0 years, female, NA, stage:III, dead, 1019 days
1489.3
DO46560
0 years, female, NA, stage:IV, dead, 286 days
1443.9
DO46528
0 years, female, NA, stage:III, alive, 6139 days
1439.8
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
1395.8
DO46354
0 years, female, NA, stage:III, dead, 843 days
1391.2
DO46538
0 years, female, NA, stage:III, dead, 1527 days
1336.3
DO46571
0 years, female, NA, stage:III, dead, 243 days
1326.8
DO46378
0 years, female, NA, stage:III, alive, 843 days
1303.3
DO46344
0 years, female, NA, stage:III, dead, 642 days
1280.1
DO46546
0 years, female, NA, stage:III, dead, 1889 days
1193.3
DO46533
0 years, female, NA, stage:III, alive, 3667 days
1162.9
DO46329
0 years, female, NA, stage:III, dead, 1699 days
1067.0
DO46340
0 years, female, NA, stage:III, dead, 616 days
1013.4
DO46332
0 years, female, NA, stage:III, dead, 689 days
984.4
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
572.9
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.3
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.2
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.2
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.2
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.1
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.1
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.1
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.1
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.0
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.0
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
0.0
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
0.0
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.0
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.0
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-0.1
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-0.1
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-0.1
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
-0.1
e9d416e7-f661-400a-896e-388545_D2
Tumor
-0.1
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-0.2
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-0.2
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
-0.2
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.2
15524912-685a-47ce-a824-567848_D2
Tumor
-0.2
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
-0.2
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-0.2
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.2
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-0.2
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
-0.2
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-0.2
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-0.2
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-0.2
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-0.2
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
-0.2
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-0.3
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-0.3
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-0.3
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-0.3
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-0.3
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-0.3
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-0.3
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
-0.3
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-0.3
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
-0.3
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.4
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-0.4
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
-0.4
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-0.4
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-0.4
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-0.4
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-0.4
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-0.4
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.4
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
-0.4
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
-0.5
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.5
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-0.5
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-0.5
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.5
285fed94-1495-448e-879b-b55de9_D2
Tumor
-0.5
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.5
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-0.5
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.5
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-0.5
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
-0.5
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-0.5
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-0.5
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
-0.5
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
-0.5
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-0.6
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
-0.6
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-0.6
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.6
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.6
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
-0.6
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
-0.6
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.6
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
-0.6
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-0.6
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-0.7
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-0.7
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
-0.7
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.7
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-0.7
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.7
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.7
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.7
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.7
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
-0.7
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-0.7
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-0.8
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.8
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.8
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.8
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.8
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.8
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.8
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.9
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-0.9
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.9
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-1.0
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-1.0
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-1.1
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-1.1
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-1.2
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-1.2
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.3
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-1.3
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.