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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS12 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1715.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9448.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7562.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7257.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6285.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6255.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6046.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6002.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5768.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5651.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5328.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5147.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5101.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5001.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4960.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4847.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4333.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4154.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4153.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4079.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3956.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3879.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3767.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3679.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3633.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3628.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3627.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3592.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3475.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3459.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3400.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3344.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3342.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3252.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3205.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3125.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3106.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3045.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3031.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2968.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2960.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2924.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2833.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2828.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2814.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2794.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2781.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2765.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2758.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2734.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2728.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2690.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2674.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2656.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2654.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2650.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2642.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2618.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2586.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2581.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2573.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2568.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2550.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2538.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2512.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2482.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2469.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2465.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2458.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2453.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2440.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2434.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2398.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2321.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2305.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2289.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2267.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2251.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2235.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2225.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2202.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2195.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2188.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2186.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2164.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2159.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2155.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2154.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2143.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2139.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2122.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2116.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2111.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2101.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2089.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2013.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2010.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2004.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1992.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1978.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1966.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1949.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1941.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1915.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1908.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1877.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1861.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1850.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1840.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1812.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1810.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1797.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1794.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1776.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1774.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1773.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1757.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1748.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1735.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1729.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1727.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1726.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1723.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1719.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1685.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1676.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1676.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1660.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1659.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1652.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1647.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1642.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1640.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1620.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1593.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1590.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1587.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1577.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1553.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1546.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1543.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1535.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1528.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1520.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1519.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1516.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1515.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1505.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1500.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1500.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1491.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1490.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1487.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1481.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1479.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1459.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1456.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1456.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1451.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1447.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1446.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1438.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1430.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1430.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1429.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1420.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1416.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1406.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1394.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1393.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1387.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1384.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1373.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1371.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1371.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1366.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1363.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1339.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1336.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1331.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1327.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1319.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1314.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1313.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1312.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1308.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1307.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1307.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1289.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1282.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1280.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1279.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1277.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1272.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1260.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1249.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1249.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1246.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1236.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1235.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1231.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1231.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1227.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1224.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1216.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1213.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1212.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1209.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1208.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1206.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1205.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1198.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1198.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1185.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1179.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1177.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1176.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1175.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1175.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1171.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1169.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1167.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1159.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1159.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1159.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1147.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1143.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1141.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1138.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1120.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1112.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1108.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1104.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1102.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1102.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1096.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1094.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1085.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1081.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1080.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1077.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1071.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1070.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1064.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1061.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1060.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1058.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1058.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1041.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1035.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1034.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1031.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1024.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1021.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1021.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1020.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1016.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1013.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1012.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1011.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1009.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1006.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1005.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
992.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
989.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
989.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
985.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
984.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
984.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
984.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
980.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
975.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
966.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
965.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
965.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
956.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
956.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
952.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
948.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
948.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
942.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
936.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
934.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
934.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
927.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
925.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
919.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
918.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
914.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
914.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
911.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
911.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
907.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
906.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
903.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
901.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
889.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
886.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
884.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
872.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
869.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
853.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
851.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
828.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
827.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
820.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
814.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
809.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
796.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
776.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
772.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
772.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
770.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
770.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
769.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
762.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
760.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
752.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
739.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
729.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
720.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
715.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
710.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
709.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
708.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
706.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
694.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
690.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
687.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
682.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
670.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
670.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
668.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
665.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
662.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
659.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
652.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
644.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
641.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
639.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
635.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
630.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
630.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
629.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
613.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
592.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
570.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
565.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
560.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
559.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
558.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
553.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
553.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
548.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
544.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
541.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
515.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
513.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
504.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
499.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
420.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
356.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS12 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1365.7
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
5626.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
4936.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4766.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4440.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
3956.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3678.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
3409.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
3399.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
3399.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
3303.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3286.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
3274.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
3136.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
3110.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3029.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
3027.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
2974.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2896.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2881.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2857.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2736.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
2648.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2647.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2638.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2538.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
2466.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
2451.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
2418.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
2355.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
2326.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
2281.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
2259.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2252.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
2227.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
2222.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2166.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
2162.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
2135.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2130.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2061.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
2034.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2028.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
2010.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1982.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
1949.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1933.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
1895.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
1886.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
1843.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1835.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
1825.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1819.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1808.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1805.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
1792.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
1781.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
1702.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
1701.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
1695.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1681.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1603.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
1590.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
1571.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
1570.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
1554.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
1530.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
1529.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1521.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1511.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
1511.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
1472.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
1469.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
1462.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1426.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1425.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1405.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
1402.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
1395.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1380.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1377.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1352.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
1351.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
1345.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
1344.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1344.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1331.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
1315.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
1313.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1312.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
1309.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1304.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1303.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1299.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
1296.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1295.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1278.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
1276.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
1276.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
1269.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
1264.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1252.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1231.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
1225.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1213.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1202.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
1200.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
1191.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
1190.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1190.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
1164.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
1139.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1138.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1135.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
1132.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
1131.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
1126.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
1121.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
1117.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
1111.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1096.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
1095.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
1089.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1089.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1078.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
1063.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1060.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1053.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1050.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
1042.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
1038.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
1037.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1032.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1031.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
1025.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1019.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
1015.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1011.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
1011.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
994.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
989.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
984.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
983.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
971.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
959.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
951.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
949.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
943.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
940.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
937.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
935.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
935.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
919.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
915.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
906.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
893.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
883.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
874.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
873.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
869.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
860.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
853.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
847.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
846.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
845.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
839.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
835.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
835.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
826.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
825.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
823.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
801.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
786.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
783.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
773.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
770.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
766.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
750.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
729.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
729.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
716.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
715.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
715.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
703.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
697.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
696.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
687.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
686.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
683.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
680.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
666.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
661.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
657.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
650.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
619.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
618.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
591.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
584.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
580.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
579.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
576.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
567.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
562.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
554.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
541.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
532.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
527.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
520.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
513.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
509.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
495.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
488.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
466.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
457.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
457.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
435.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
392.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
390.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
379.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
372.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
368.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
347.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
338.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
315.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
288.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
278.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
276.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
269.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
240.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
193.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
180.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
130.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1021
Tumor
0.7
537
Tumor
0.6
965
Tumor
0.6
285
Tumor
0.6
1027
Tumor
0.6
743
Tumor
0.5
523
Tumor
0.5
1025
Tumor
0.5
355
Tumor
0.4
865
Tumor
0.4
685
Tumor
0.4
745
Tumor
0.4
981
Tumor
0.4
983
Tumor
0.4
951
Tumor
0.4
557
Tumor
0.4
957
Tumor
0.4
861
Tumor
0.3
131
Tumor
0.3
471
Tumor
0.3
817
Tumor
0.3
937
Tumor
0.3
497
Tumor
0.3
952
Normal
0.3
737
Tumor
0.3
223
Tumor
0.3
473
Tumor
0.3
823
Tumor
0.3
851
Tumor
0.3
697
Tumor
0.3
533
Tumor
0.3
411
Tumor
0.3
363
Tumor
0.3
967
Tumor
0.3
746
Normal
0.2
545
Tumor
0.2
1043
Tumor
0.2
925
Tumor
0.2
477
Tumor
0.2
921
Tumor
0.2
755
Tumor
0.2
525
Tumor
0.2
727
Tumor
0.2
515
Tumor
0.2
554
Normal
0.2
527
Tumor
0.2
715
Tumor
0.2
915
Tumor
0.2
1031
Tumor
0.2
535
Tumor
0.2
367
Tumor
0.2
283
Tumor
0.1
1015
Tumor
0.1
923
Tumor
0.1
493
Tumor
0.1
955
Tumor
0.1
393
Tumor
0.1
483
Tumor
0.1
461
Tumor
0.1
966
Normal
0.1
815
Tumor
0.1
975
Tumor
0.1
977
Tumor
0.1
492
Normal
0.1
211
Tumor
0.1
744
Normal
0.1
385
Tumor
0.1
395
Tumor
0.1
1041
Tumor
0.1
491
Tumor
0.1
261
Tumor
0.1
553
Tumor
0.0
911
Tumor
0.0
567
Tumor
0.0
777
Tumor
0.0
878
Normal
0.0
1013
Tumor
0.0
327
Tumor
0.0
1028
Normal
0.0
538
Normal
0.0
257
Tumor
0.0
137
Tumor
0.0
963
Tumor
0.0
487
Tumor
0.0
883
Tumor
0.0
813
Tumor
0.0
738
Normal
-0.1
695
Tumor
-0.1
518
Normal
-0.1
785
Tumor
-0.1
135
Tumor
-0.1
874
Normal
-0.1
867
Tumor
-0.1
271
Tumor
-0.1
113
Tumor
-0.1
124
Normal
-0.1
778
Normal
-0.1
375
Tumor
-0.1
953
Tumor
-0.1
474
Normal
-0.2
696
Normal
-0.2
455
Tumor
-0.2
412
Normal
-0.2
741
Tumor
-0.2
128
Normal
-0.2
171
Tumor
-0.2
661
Tumor
-0.2
1026
Normal
-0.2
713
Tumor
-0.2
227
Tumor
-0.2
914
Normal
-0.2
141
Tumor
-0.2
357
Tumor
-0.2
728
Normal
-0.2
721
Tumor
-0.3
873
Tumor
-0.3
448
Normal
-0.3
343
Tumor
-0.3
943
Tumor
-0.3
313
Tumor
-0.3
387
Tumor
-0.3
917
Tumor
-0.3
147
Tumor
-0.3
123
Tumor
-0.3
698
Normal
-0.3
956
Normal
-0.3
516
Normal
-0.3
938
Normal
-0.3
864
Normal
-0.3
816
Normal
-0.3
526
Normal
-0.3
944
Normal
-0.3
546
Normal
-0.3
881
Tumor
-0.3
185
Tumor
-0.3
447
Tumor
-0.3
982
Normal
-0.3
114
Normal
-0.3
686
Normal
-0.3
111
Normal
-0.3
517
Tumor
-0.3
452
Normal
-0.4
342
Normal
-0.4
513
Tumor
-0.4
351
Tumor
-0.4
877
Tumor
-0.4
724
Normal
-0.4
484
Normal
-0.4
924
Normal
-0.4
231
Tumor
-0.4
267
Tumor
-0.4
862
Normal
-0.4
742
Normal
-0.4
976
Normal
-0.4
534
Normal
-0.4
451
Tumor
-0.4
286
Normal
-0.4
1016
Normal
-0.4
866
Normal
-0.4
445
Tumor
-0.4
462
Normal
-0.4
228
Normal
-0.4
635
Tumor
-0.4
913
Tumor
-0.4
222
Normal
-0.4
488
Normal
-0.4
277
Tumor
-0.4
125
Tumor
-0.4
161
Tumor
-0.4
443
Tumor
-0.4
172
Normal
-0.4
311
Tumor
-0.5
968
Normal
-0.5
536
Normal
-0.5
524
Normal
-0.5
415
Tumor
-0.5
494
Normal
-0.5
331
Tumor
-0.5
352
Normal
-0.5
1022
Normal
-0.5
714
Normal
-0.5
344
Normal
-0.5
716
Normal
-0.5
186
Normal
-0.5
112
Tumor
-0.5
964
Normal
-0.5
465
Tumor
-0.5
392
Normal
-0.5
463
Tumor
-0.5
472
Normal
-0.5
214
Normal
-0.5
212
Normal
-0.5
425
Tumor
-0.5
857
Tumor
-0.6
436
Normal
-0.6
814
Normal
-0.6
298
Normal
-0.6
376
Normal
-0.6
922
Normal
-0.6
358
Normal
-0.6
722
Normal
-0.6
916
Normal
-0.6
918
Normal
-0.6
528
Normal
-0.6
498
Normal
-0.6
138
Normal
-0.6
353
Tumor
-0.6
394
Normal
-0.6
142
Normal
-0.6
824
Normal
-0.6
232
Normal
-0.6
136
Normal
-0.6
162
Normal
-0.6
514
Normal
-0.6
284
Normal
-0.6
297
Tumor
-0.6
356
Normal
-0.6
278
Normal
-0.6
427
Tumor
-0.6
868
Normal
-0.6
421
Tumor
-0.6
858
Normal
-0.6
756
Normal
-0.6
312
Normal
-0.6
388
Normal
-0.6
332
Normal
-0.6
386
Normal
-0.7
328
Normal
-0.7
126
Normal
-0.7
272
Normal
-0.7
852
Normal
-0.7
954
Normal
-0.7
146
Normal
-0.7
434
Normal
-0.7
258
Normal
-0.7
148
Normal
-0.7
368
Normal
-0.7
482
Normal
-0.7
573
Tumor
-0.7
396
Normal
-0.7
364
Normal
-0.7
723
Tumor
-0.7
423
Tumor
-0.7
1042
Normal
-0.7
481
Tumor
-0.7
314
Normal
-0.7
366
Normal
-0.7
466
Normal
-0.7
218
Normal
-0.7
617
Tumor
-0.7
1014
Normal
-0.7
224
Normal
-0.7
786
Normal
-0.7
422
Normal
-0.7
958
Normal
-0.7
926
Normal
-0.7
196
Normal
-0.7
262
Normal
-0.8
882
Normal
-0.8
435
Tumor
-0.8
431
Tumor
-0.8
416
Normal
-0.8
354
Normal
-0.8
984
Normal
-0.8
1044
Normal
-0.8
1032
Normal
-0.8
365
Tumor
-0.8
413
Tumor
-0.8
818
Normal
-0.8
217
Tumor
-0.8
362
Normal
-0.8
636
Normal
-0.8
132
Normal
-0.8
446
Normal
-0.8
341
Tumor
-0.9
213
Tumor
-0.9
391
Tumor
-0.9
478
Normal
-0.9
188
Normal
-0.9
433
Tumor
-0.9
268
Normal
-0.9
1045
Tumor
-0.9
145
Tumor
-0.9
432
Normal
-0.9
863
Tumor
-0.9
467
Tumor
-0.9
1046
Normal
-0.9
127
Tumor
-0.9
384
Normal
-1.0
424
Normal
-1.0
383
Tumor
-1.0
464
Normal
-1.0
414
Normal
-1.0
221
Tumor
-1.0
664
Normal
-1.0
187
Tumor
-1.0
428
Normal
-1.0
426
Normal
-1.0
662
Normal
-1.1
568
Normal
-1.1
195
Tumor
-1.1
647
Tumor
-1.1
618
Normal
-1.1
444
Normal
-1.1
192
Normal
-1.1
574
Normal
-1.1
468
Normal
-1.1
361
Tumor
-1.1
648
Normal
-1.1
456
Normal
-1.2
978
Normal
-1.2
571
Tumor
-1.2
663
Tumor
-1.2
666
Normal
-1.2
642
Normal
-1.2
628
Normal
-1.2
672
Normal
-1.3
884
Normal
-1.3
191
Tumor
-1.3
671
Tumor
-1.3
572
Normal
-1.3
616
Normal
-1.4
615
Tumor
-1.4
564
Normal
-1.4
558
Normal
-1.4
627
Tumor
-1.4
563
Tumor
-1.5
665
Tumor
-1.5
912
Normal
-1.6
641
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.