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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMAP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMAP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.1
533
Tumor
1.0
545
Tumor
0.9
537
Tumor
0.9
1013
Tumor
0.9
527
Tumor
0.9
491
Tumor
0.8
745
Tumor
0.8
953
Tumor
0.7
313
Tumor
0.7
125
Tumor
0.7
411
Tumor
0.6
553
Tumor
0.6
1025
Tumor
0.6
1021
Tumor
0.6
817
Tumor
0.6
921
Tumor
0.6
447
Tumor
0.6
277
Tumor
0.5
663
Tumor
0.5
497
Tumor
0.5
873
Tumor
0.5
697
Tumor
0.5
523
Tumor
0.5
777
Tumor
0.5
724
Normal
0.5
525
Tumor
0.5
473
Tumor
0.5
1043
Tumor
0.4
967
Tumor
0.4
355
Tumor
0.4
695
Tumor
0.4
1031
Tumor
0.4
1015
Tumor
0.4
147
Tumor
0.4
957
Tumor
0.4
951
Tumor
0.4
863
Tumor
0.4
285
Tumor
0.4
283
Tumor
0.4
883
Tumor
0.4
487
Tumor
0.3
471
Tumor
0.3
131
Tumor
0.3
978
Normal
0.3
881
Tumor
0.3
1046
Normal
0.3
535
Tumor
0.3
943
Tumor
0.3
917
Tumor
0.3
353
Tumor
0.3
1016
Normal
0.3
975
Tumor
0.3
647
Tumor
0.3
227
Tumor
0.2
415
Tumor
0.2
528
Normal
0.2
824
Normal
0.2
331
Tumor
0.2
964
Normal
0.2
851
Tumor
0.2
271
Tumor
0.2
627
Tumor
0.2
482
Normal
0.2
852
Normal
0.2
882
Normal
0.2
982
Normal
0.2
515
Tumor
0.2
536
Normal
0.2
864
Normal
0.2
524
Normal
0.2
912
Normal
0.2
861
Tumor
0.2
722
Normal
0.2
858
Normal
0.2
472
Normal
0.2
1045
Tumor
0.2
395
Tumor
0.2
868
Normal
0.2
223
Tumor
0.2
661
Tumor
0.2
698
Normal
0.2
977
Tumor
0.2
141
Tumor
0.2
311
Tumor
0.2
573
Tumor
0.2
884
Normal
0.2
427
Tumor
0.2
478
Normal
0.2
367
Tumor
0.2
984
Normal
0.2
714
Normal
0.2
615
Tumor
0.2
554
Normal
0.2
448
Normal
0.2
431
Tumor
0.2
1014
Normal
0.2
874
Normal
0.1
477
Tumor
0.1
571
Tumor
0.1
1044
Normal
0.1
1028
Normal
0.1
818
Normal
0.1
923
Tumor
0.1
866
Normal
0.1
968
Normal
0.1
737
Tumor
0.1
567
Tumor
0.1
135
Tumor
0.1
914
Normal
0.1
514
Normal
0.1
435
Tumor
0.1
1042
Normal
0.1
443
Tumor
0.1
925
Tumor
0.1
474
Normal
0.1
963
Tumor
0.1
944
Normal
0.1
1026
Normal
0.1
955
Tumor
0.1
862
Normal
0.1
983
Tumor
0.1
455
Tumor
0.1
526
Normal
0.1
878
Normal
0.1
327
Tumor
0.1
966
Normal
0.1
713
Tumor
0.1
937
Tumor
0.1
267
Tumor
0.1
297
Tumor
0.1
976
Normal
0.1
913
Tumor
0.1
462
Normal
0.1
1041
Tumor
0.1
696
Normal
0.1
434
Normal
0.1
224
Normal
0.1
171
Tumor
0.1
221
Tumor
0.1
916
Normal
0.1
518
Normal
0.1
444
Normal
0.0
716
Normal
0.0
563
Tumor
0.0
911
Tumor
0.0
123
Tumor
0.0
357
Tumor
0.0
926
Normal
0.0
814
Normal
0.0
187
Tumor
0.0
1032
Normal
0.0
815
Tumor
0.0
786
Normal
0.0
981
Tumor
0.0
391
Tumor
0.0
641
Tumor
0.0
436
Normal
0.0
463
Tumor
0.0
686
Normal
0.0
952
Normal
0.0
813
Tumor
0.0
363
Tumor
0.0
328
Normal
0.0
298
Normal
0.0
278
Normal
0.0
954
Normal
0.0
161
Tumor
0.0
217
Tumor
0.0
412
Normal
0.0
492
Normal
0.0
534
Normal
0.0
351
Tumor
0.0
212
Normal
0.0
113
Tumor
0.0
778
Normal
0.0
416
Normal
0.0
461
Tumor
0.0
823
Tumor
0.0
1027
Tumor
0.0
446
Normal
0.0
483
Tumor
0.0
922
Normal
0.0
867
Tumor
0.0
538
Normal
0.0
958
Normal
0.0
343
Tumor
0.0
965
Tumor
0.0
642
Normal
0.0
546
Normal
0.0
387
Tumor
0.0
137
Tumor
0.0
112
Tumor
0.0
261
Tumor
0.0
564
Normal
0.0
128
Normal
0.0
616
Normal
0.0
617
Tumor
-0.1
918
Normal
-0.1
956
Normal
-0.1
191
Tumor
-0.1
284
Normal
-0.1
1022
Normal
-0.1
728
Normal
-0.1
574
Normal
-0.1
636
Normal
-0.1
196
Normal
-0.1
723
Tumor
-0.1
484
Normal
-0.1
428
Normal
-0.1
364
Normal
-0.1
755
Tumor
-0.1
938
Normal
-0.1
218
Normal
-0.1
785
Tumor
-0.1
816
Normal
-0.1
498
Normal
-0.1
721
Tumor
-0.1
286
Normal
-0.1
628
Normal
-0.1
516
Normal
-0.1
228
Normal
-0.1
618
Normal
-0.1
421
Tumor
-0.1
727
Tumor
-0.1
924
Normal
-0.1
741
Tumor
-0.1
756
Normal
-0.1
222
Normal
-0.1
425
Tumor
-0.1
356
Normal
-0.1
352
Normal
-0.1
432
Normal
-0.1
145
Tumor
-0.1
558
Normal
-0.1
386
Normal
-0.1
465
Tumor
-0.1
424
Normal
-0.1
915
Tumor
-0.1
481
Tumor
-0.1
383
Tumor
-0.1
344
Normal
-0.1
488
Normal
-0.1
361
Tumor
-0.1
413
Tumor
-0.1
742
Normal
-0.1
738
Normal
-0.2
365
Tumor
-0.2
568
Normal
-0.2
865
Tumor
-0.2
396
Normal
-0.2
877
Tumor
-0.2
445
Tumor
-0.2
468
Normal
-0.2
466
Normal
-0.2
257
Tumor
-0.2
185
Tumor
-0.2
127
Tumor
-0.2
451
Tumor
-0.2
423
Tumor
-0.2
456
Normal
-0.2
385
Tumor
-0.2
114
Normal
-0.2
394
Normal
-0.2
126
Normal
-0.2
332
Normal
-0.2
368
Normal
-0.2
388
Normal
-0.2
513
Tumor
-0.2
572
Normal
-0.2
312
Normal
-0.2
494
Normal
-0.2
493
Tumor
-0.2
214
Normal
-0.2
358
Normal
-0.2
672
Normal
-0.2
635
Tumor
-0.2
142
Normal
-0.2
111
Normal
-0.2
341
Tumor
-0.2
188
Normal
-0.2
744
Normal
-0.3
262
Normal
-0.3
392
Normal
-0.3
314
Normal
-0.3
258
Normal
-0.3
433
Tumor
-0.3
362
Normal
-0.3
136
Normal
-0.3
746
Normal
-0.3
422
Normal
-0.3
665
Tumor
-0.3
375
Tumor
-0.3
464
Normal
-0.3
857
Tumor
-0.3
162
Normal
-0.3
376
Normal
-0.3
666
Normal
-0.3
124
Normal
-0.3
743
Tumor
-0.3
138
Normal
-0.3
268
Normal
-0.3
132
Normal
-0.3
272
Normal
-0.3
467
Tumor
-0.3
414
Normal
-0.3
426
Normal
-0.3
517
Tumor
-0.3
148
Normal
-0.3
354
Normal
-0.3
557
Tumor
-0.3
685
Tumor
-0.3
232
Normal
-0.4
662
Normal
-0.4
172
Normal
-0.4
452
Normal
-0.4
342
Normal
-0.4
195
Tumor
-0.4
192
Normal
-0.4
366
Normal
-0.4
664
Normal
-0.4
231
Tumor
-0.4
393
Tumor
-0.4
648
Normal
-0.4
146
Normal
-0.4
186
Normal
-0.4
213
Tumor
-0.5
384
Normal
-0.6
671
Tumor
-0.6
715
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.