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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERINC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
163.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
158.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
145.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
139.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
130.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
130.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
124.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
121.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
121.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
117.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
116.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
116.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
112.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
111.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
109.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
108.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
108.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
104.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
103.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
103.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
98.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
97.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
97.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
96.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
95.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
95.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
92.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
92.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
92.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
91.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
88.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
86.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
86.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
86.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
85.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
85.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
84.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
83.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
83.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
83.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
82.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
82.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
81.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
80.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
80.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
80.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
78.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
78.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
78.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
78.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
78.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
78.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
78.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
78.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
77.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
77.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
77.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
75.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
75.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
75.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
74.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
74.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
73.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
73.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
73.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
73.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
73.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
72.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
72.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
72.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
72.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
71.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
71.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
71.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
71.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
71.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
70.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
70.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
70.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
69.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
69.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
69.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
68.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
68.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
68.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
68.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
67.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
67.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
66.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
66.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
66.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
65.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
65.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
65.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
65.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
65.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
64.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
63.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
63.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
62.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
62.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
61.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
61.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
60.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
60.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
59.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
57.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
57.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
56.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
56.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
56.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
55.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
55.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
55.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
54.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
54.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
54.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
53.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
53.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
53.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
52.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
52.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
52.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
51.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
51.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
49.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
49.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
48.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
48.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
47.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
47.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
46.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
46.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
46.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
45.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
45.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
45.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
43.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
43.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
40.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
37.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERINC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
64.9
Number of samples
231
Samples
Sample
Description
TPM
DO45163
0 years, male, NA, stage:2, alive, 960 days
164.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
138.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
130.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
130.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
130.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
129.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
124.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
124.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
124.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
123.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
116.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
115.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
115.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
111.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
109.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
104.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
104.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
103.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
101.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
101.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
100.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
99.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
99.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
98.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
98.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
98.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
97.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
97.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
96.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
96.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
96.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
96.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
96.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
96.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
96.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
96.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
93.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
92.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
92.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
92.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
92.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
91.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
91.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
91.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
91.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
90.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
90.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
89.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
89.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
88.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
87.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
86.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
86.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
86.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
83.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
83.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
82.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
81.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
81.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
81.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
80.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
80.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
80.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
78.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
77.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
77.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
76.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
76.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
76.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
76.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
75.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
75.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
74.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
73.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
72.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
72.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
72.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
71.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
71.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
71.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
70.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
70.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
70.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
69.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
69.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
69.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
68.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
68.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
67.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
66.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
66.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
65.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
65.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
65.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
65.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
64.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
63.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
63.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
62.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
61.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
61.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
61.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
60.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
60.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
57.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
57.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
57.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
57.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
57.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
57.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
56.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
56.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
55.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
54.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
54.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
53.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
53.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
52.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
52.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
52.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
51.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
50.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
44.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
44.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
44.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
43.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
43.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
42.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
41.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.2
473
Tumor
1.1
413
Tumor
1.0
425
Tumor
0.9
123
Tumor
0.7
471
Tumor
0.7
573
Tumor
0.7
527
Tumor
0.7
617
Tumor
0.6
455
Tumor
0.6
223
Tumor
0.5
571
Tumor
0.5
135
Tumor
0.5
363
Tumor
0.5
355
Tumor
0.5
497
Tumor
0.4
567
Tumor
0.4
525
Tumor
0.4
745
Tumor
0.4
427
Tumor
0.4
445
Tumor
0.4
137
Tumor
0.4
925
Tumor
0.4
483
Tumor
0.4
367
Tumor
0.4
911
Tumor
0.4
435
Tumor
0.3
493
Tumor
0.3
231
Tumor
0.3
533
Tumor
0.3
943
Tumor
0.3
421
Tumor
0.3
615
Tumor
0.3
616
Normal
0.3
187
Tumor
0.3
563
Tumor
0.3
965
Tumor
0.3
515
Tumor
0.3
221
Tumor
0.3
431
Tumor
0.3
477
Tumor
0.2
227
Tumor
0.2
131
Tumor
0.2
491
Tumor
0.2
297
Tumor
0.2
494
Normal
0.2
387
Tumor
0.2
715
Tumor
0.2
741
Tumor
0.2
983
Tumor
0.2
411
Tumor
0.2
277
Tumor
0.2
685
Tumor
0.2
523
Tumor
0.2
663
Tumor
0.2
463
Tumor
0.2
147
Tumor
0.2
451
Tumor
0.2
977
Tumor
0.1
488
Normal
0.1
428
Normal
0.1
864
Normal
0.1
443
Tumor
0.1
487
Tumor
0.1
353
Tumor
0.1
554
Normal
0.1
1013
Tumor
0.1
815
Tumor
0.1
478
Normal
0.1
713
Tumor
0.1
951
Tumor
0.1
874
Normal
0.1
383
Tumor
0.1
641
Tumor
0.1
923
Tumor
0.1
361
Tumor
0.0
922
Normal
0.0
665
Tumor
0.0
423
Tumor
0.0
697
Tumor
0.0
311
Tumor
0.0
436
Normal
0.0
124
Normal
0.0
981
Tumor
0.0
926
Normal
0.0
222
Normal
0.0
777
Tumor
0.0
823
Tumor
0.0
271
Tumor
0.0
422
Normal
0.0
412
Normal
0.0
492
Normal
0.0
468
Normal
0.0
918
Normal
0.0
743
Tumor
0.0
537
Tumor
0.0
211
Tumor
0.0
474
Normal
0.0
963
Tumor
0.0
461
Tumor
0.0
534
Normal
0.0
447
Tumor
0.0
516
Normal
0.0
125
Tumor
0.0
395
Tumor
0.0
433
Tumor
0.0
1042
Normal
0.0
553
Tumor
0.0
744
Normal
0.0
518
Normal
-0.1
498
Normal
-0.1
572
Normal
-0.1
465
Tumor
-0.1
724
Normal
-0.1
448
Normal
-0.1
424
Normal
-0.1
1026
Normal
-0.1
564
Normal
-0.1
866
Normal
-0.1
953
Tumor
-0.1
861
Tumor
-0.1
472
Normal
-0.1
278
Normal
-0.1
915
Tumor
-0.1
456
Normal
-0.1
482
Normal
-0.1
452
Normal
-0.1
415
Tumor
-0.1
464
Normal
-0.1
432
Normal
-0.1
937
Tumor
-0.1
867
Tumor
-0.1
128
Normal
-0.1
917
Tumor
-0.1
354
Normal
-0.1
446
Normal
-0.1
538
Normal
-0.1
466
Normal
-0.1
618
Normal
-0.1
727
Tumor
-0.1
191
Tumor
-0.1
1015
Tumor
-0.1
924
Normal
-0.1
517
Tumor
-0.1
755
Tumor
-0.1
737
Tumor
-0.1
217
Tumor
-0.1
375
Tumor
-0.1
526
Normal
-0.1
313
Tumor
-0.2
148
Normal
-0.2
863
Tumor
-0.2
357
Tumor
-0.2
228
Normal
-0.2
878
Normal
-0.2
171
Tumor
-0.2
312
Normal
-0.2
344
Normal
-0.2
212
Normal
-0.2
695
Tumor
-0.2
185
Tumor
-0.2
142
Normal
-0.2
341
Tumor
-0.2
574
Normal
-0.2
258
Normal
-0.2
364
Normal
-0.2
384
Normal
-0.2
746
Normal
-0.2
954
Normal
-0.2
462
Normal
-0.2
218
Normal
-0.2
416
Normal
-0.2
196
Normal
-0.2
545
Tumor
-0.2
283
Tumor
-0.2
146
Normal
-0.2
285
Tumor
-0.2
356
Normal
-0.2
484
Normal
-0.2
257
Tumor
-0.2
192
Normal
-0.2
434
Normal
-0.2
351
Tumor
-0.2
528
Normal
-0.2
426
Normal
-0.2
314
Normal
-0.2
365
Tumor
-0.2
298
Normal
-0.2
1046
Normal
-0.2
636
Normal
-0.2
546
Normal
-0.2
756
Normal
-0.2
524
Normal
-0.2
284
Normal
-0.2
721
Tumor
-0.2
728
Normal
-0.2
982
Normal
-0.2
342
Normal
-0.2
785
Tumor
-0.2
111
Normal
-0.2
232
Normal
-0.2
628
Normal
-0.2
635
Tumor
-0.2
952
Normal
-0.2
328
Normal
-0.2
414
Normal
-0.2
272
Normal
-0.2
331
Tumor
-0.3
882
Normal
-0.3
696
Normal
-0.3
642
Normal
-0.3
964
Normal
-0.3
214
Normal
-0.3
141
Tumor
-0.3
967
Tumor
-0.3
558
Normal
-0.3
112
Tumor
-0.3
914
Normal
-0.3
813
Tumor
-0.3
722
Normal
-0.3
261
Tumor
-0.3
862
Normal
-0.3
944
Normal
-0.3
778
Normal
-0.3
883
Tumor
-0.3
267
Tumor
-0.3
286
Normal
-0.3
738
Normal
-0.3
224
Normal
-0.3
716
Normal
-0.3
627
Tumor
-0.3
976
Normal
-0.3
824
Normal
-0.3
851
Tumor
-0.3
514
Normal
-0.3
388
Normal
-0.3
366
Normal
-0.3
444
Normal
-0.3
956
Normal
-0.3
172
Normal
-0.3
714
Normal
-0.3
1014
Normal
-0.3
114
Normal
-0.3
127
Tumor
-0.3
817
Tumor
-0.3
145
Tumor
-0.3
742
Normal
-0.3
913
Tumor
-0.3
535
Tumor
-0.3
385
Tumor
-0.3
672
Normal
-0.4
394
Normal
-0.4
162
Normal
-0.4
698
Normal
-0.4
686
Normal
-0.4
786
Normal
-0.4
568
Normal
-0.4
362
Normal
-0.4
647
Tumor
-0.4
858
Normal
-0.4
268
Normal
-0.4
132
Normal
-0.4
467
Tumor
-0.4
327
Tumor
-0.4
393
Tumor
-0.4
723
Tumor
-0.4
481
Tumor
-0.4
352
Normal
-0.4
816
Normal
-0.4
984
Normal
-0.4
396
Normal
-0.4
391
Tumor
-0.4
376
Normal
-0.4
955
Tumor
-0.4
536
Normal
-0.4
1022
Normal
-0.4
186
Normal
-0.4
868
Normal
-0.4
392
Normal
-0.4
916
Normal
-0.4
938
Normal
-0.4
968
Normal
-0.4
136
Normal
-0.4
975
Tumor
-0.4
138
Normal
-0.4
386
Normal
-0.5
662
Normal
-0.5
884
Normal
-0.5
1044
Normal
-0.5
958
Normal
-0.5
1016
Normal
-0.5
332
Normal
-0.5
195
Tumor
-0.5
126
Normal
-0.5
873
Tumor
-0.5
213
Tumor
-0.5
912
Normal
-0.5
661
Tumor
-0.5
957
Tumor
-0.5
648
Normal
-0.5
262
Normal
-0.5
1028
Normal
-0.5
188
Normal
-0.5
161
Tumor
-0.5
1027
Tumor
-0.5
1045
Tumor
-0.5
978
Normal
-0.5
881
Tumor
-0.5
368
Normal
-0.6
1021
Tumor
-0.6
877
Tumor
-0.6
666
Normal
-0.6
664
Normal
-0.6
921
Tumor
-0.6
814
Normal
-0.6
852
Normal
-0.6
865
Tumor
-0.6
966
Normal
-0.6
818
Normal
-0.6
1032
Normal
-0.6
557
Tumor
-0.7
1043
Tumor
-0.7
513
Tumor
-0.7
113
Tumor
-0.8
1041
Tumor
-0.8
857
Tumor
-0.8
358
Normal
-0.8
671
Tumor
-0.8
1025
Tumor
-0.9
1031
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
