We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TDP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
132.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
69.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
66.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
61.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
61.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
61.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
61.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
59.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
59.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
56.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
56.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
50.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
49.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
48.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
42.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
38.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TDP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.0
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
242.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
103.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
95.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
78.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
74.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
70.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
64.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
64.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
63.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
60.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
57.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
53.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
52.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
52.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
51.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
50.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
49.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
47.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
47.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
47.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
38.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.6
285
Tumor
1.6
123
Tumor
1.2
967
Tumor
1.1
957
Tumor
1.0
925
Tumor
0.9
965
Tumor
0.9
951
Tumor
0.9
661
Tumor
0.9
865
Tumor
0.9
567
Tumor
0.8
112
Tumor
0.8
331
Tumor
0.8
553
Tumor
0.8
267
Tumor
0.7
367
Tumor
0.7
817
Tumor
0.7
877
Tumor
0.7
221
Tumor
0.7
671
Tumor
0.7
127
Tumor
0.6
533
Tumor
0.6
663
Tumor
0.6
545
Tumor
0.6
497
Tumor
0.6
815
Tumor
0.6
391
Tumor
0.6
921
Tumor
0.6
463
Tumor
0.5
493
Tumor
0.5
527
Tumor
0.5
883
Tumor
0.5
722
Normal
0.5
413
Tumor
0.5
343
Tumor
0.5
571
Tumor
0.5
361
Tumor
0.5
456
Normal
0.5
283
Tumor
0.4
365
Tumor
0.4
464
Normal
0.4
1027
Tumor
0.4
387
Tumor
0.4
231
Tumor
0.4
823
Tumor
0.4
467
Tumor
0.4
385
Tumor
0.4
277
Tumor
0.4
313
Tumor
0.4
695
Tumor
0.4
171
Tumor
0.4
473
Tumor
0.4
1013
Tumor
0.3
425
Tumor
0.3
351
Tumor
0.3
672
Normal
0.3
483
Tumor
0.3
375
Tumor
0.3
466
Normal
0.3
923
Tumor
0.3
917
Tumor
0.3
713
Tumor
0.3
1041
Tumor
0.3
213
Tumor
0.3
468
Normal
0.3
666
Normal
0.3
777
Tumor
0.3
311
Tumor
0.3
785
Tumor
0.3
743
Tumor
0.3
423
Tumor
0.2
227
Tumor
0.2
376
Normal
0.2
491
Tumor
0.2
664
Normal
0.2
411
Tumor
0.2
977
Tumor
0.2
813
Tumor
0.2
383
Tumor
0.2
366
Normal
0.2
641
Tumor
0.2
128
Normal
0.2
257
Tumor
0.2
355
Tumor
0.2
662
Normal
0.2
161
Tumor
0.2
665
Tumor
0.2
362
Normal
0.2
912
Normal
0.2
217
Tumor
0.2
455
Tumor
0.2
913
Tumor
0.2
741
Tumor
0.2
297
Tumor
0.2
444
Normal
0.2
384
Normal
0.2
211
Tumor
0.2
314
Normal
0.2
368
Normal
0.1
452
Normal
0.1
867
Tumor
0.1
814
Normal
0.1
982
Normal
0.1
312
Normal
0.1
863
Tumor
0.1
131
Tumor
0.1
1021
Tumor
0.1
911
Tumor
0.1
574
Normal
0.1
538
Normal
0.1
477
Tumor
0.1
353
Tumor
0.1
513
Tumor
0.1
685
Tumor
0.1
332
Normal
0.1
648
Normal
0.1
1031
Tumor
0.1
958
Normal
0.1
114
Normal
0.1
963
Tumor
0.1
1045
Tumor
0.1
145
Tumor
0.1
357
Tumor
0.1
271
Tumor
0.1
284
Normal
0.1
124
Normal
0.1
146
Normal
0.1
882
Normal
0.1
1046
Normal
0.1
278
Normal
0.1
966
Normal
0.1
964
Normal
0.0
433
Tumor
0.0
884
Normal
0.0
126
Normal
0.0
364
Normal
0.0
113
Tumor
0.0
414
Normal
0.0
914
Normal
0.0
481
Tumor
0.0
478
Normal
0.0
192
Normal
0.0
563
Tumor
0.0
471
Tumor
0.0
696
Normal
0.0
981
Tumor
0.0
568
Normal
0.0
484
Normal
0.0
492
Normal
0.0
573
Tumor
0.0
861
Tumor
0.0
224
Normal
0.0
572
Normal
0.0
268
Normal
0.0
125
Tumor
0.0
428
Normal
0.0
498
Normal
0.0
451
Tumor
0.0
881
Tumor
0.0
431
Tumor
0.0
111
Normal
0.0
298
Normal
0.0
487
Tumor
0.0
983
Tumor
0.0
388
Normal
0.0
195
Tumor
0.0
1042
Normal
0.0
744
Normal
-0.1
138
Normal
-0.1
517
Tumor
-0.1
851
Tumor
-0.1
443
Tumor
-0.1
132
Normal
-0.1
386
Normal
-0.1
222
Normal
-0.1
148
Normal
-0.1
392
Normal
-0.1
196
Normal
-0.1
261
Tumor
-0.1
427
Tumor
-0.1
435
Tumor
-0.1
727
Tumor
-0.1
852
Normal
-0.1
724
Normal
-0.1
955
Tumor
-0.1
424
Normal
-0.1
818
Normal
-0.1
714
Normal
-0.1
488
Normal
-0.1
461
Tumor
-0.1
564
Normal
-0.1
534
Normal
-0.1
953
Tumor
-0.1
627
Tumor
-0.1
636
Normal
-0.1
142
Normal
-0.1
482
Normal
-0.1
354
Normal
-0.1
141
Tumor
-0.1
525
Tumor
-0.1
191
Tumor
-0.1
915
Tumor
-0.1
918
Normal
-0.1
728
Normal
-0.1
922
Normal
-0.1
944
Normal
-0.1
745
Tumor
-0.1
937
Tumor
-0.1
943
Tumor
-0.1
635
Tumor
-0.1
535
Tumor
-0.2
858
Normal
-0.2
1043
Tumor
-0.2
1044
Normal
-0.2
968
Normal
-0.2
647
Tumor
-0.2
857
Tumor
-0.2
546
Normal
-0.2
1026
Normal
-0.2
494
Normal
-0.2
698
Normal
-0.2
515
Tumor
-0.2
952
Normal
-0.2
186
Normal
-0.2
1025
Tumor
-0.2
721
Tumor
-0.2
616
Normal
-0.2
472
Normal
-0.2
187
Tumor
-0.2
978
Normal
-0.2
232
Normal
-0.2
218
Normal
-0.2
432
Normal
-0.2
524
Normal
-0.2
286
Normal
-0.2
421
Tumor
-0.2
212
Normal
-0.2
136
Normal
-0.2
954
Normal
-0.2
615
Tumor
-0.2
223
Tumor
-0.2
342
Normal
-0.2
465
Tumor
-0.2
523
Tumor
-0.2
137
Tumor
-0.2
926
Normal
-0.2
516
Normal
-0.2
756
Normal
-0.2
618
Normal
-0.2
262
Normal
-0.2
873
Tumor
-0.2
214
Normal
-0.2
742
Normal
-0.2
956
Normal
-0.2
558
Normal
-0.2
824
Normal
-0.2
445
Tumor
-0.2
462
Normal
-0.2
415
Tumor
-0.2
528
Normal
-0.2
412
Normal
-0.2
526
Normal
-0.2
258
Normal
-0.2
344
Normal
-0.2
518
Normal
-0.2
328
Normal
-0.2
976
Normal
-0.2
916
Normal
-0.2
697
Tumor
-0.2
924
Normal
-0.2
878
Normal
-0.2
642
Normal
-0.2
147
Tumor
-0.3
868
Normal
-0.3
755
Tumor
-0.3
514
Normal
-0.3
188
Normal
-0.3
723
Tumor
-0.3
426
Normal
-0.3
446
Normal
-0.3
778
Normal
-0.3
162
Normal
-0.3
786
Normal
-0.3
938
Normal
-0.3
862
Normal
-0.3
738
Normal
-0.3
352
Normal
-0.3
272
Normal
-0.3
628
Normal
-0.3
984
Normal
-0.3
228
Normal
-0.3
536
Normal
-0.3
1014
Normal
-0.3
416
Normal
-0.3
396
Normal
-0.3
1032
Normal
-0.3
447
Tumor
-0.3
737
Tumor
-0.3
864
Normal
-0.3
715
Tumor
-0.3
434
Normal
-0.3
135
Tumor
-0.3
448
Normal
-0.3
327
Tumor
-0.3
617
Tumor
-0.3
358
Normal
-0.3
394
Normal
-0.3
816
Normal
-0.3
975
Tumor
-0.3
554
Normal
-0.3
686
Normal
-0.4
436
Normal
-0.4
474
Normal
-0.4
716
Normal
-0.4
1028
Normal
-0.4
356
Normal
-0.4
422
Normal
-0.4
1016
Normal
-0.4
866
Normal
-0.4
557
Tumor
-0.4
172
Normal
-0.4
185
Tumor
-0.4
363
Tumor
-0.4
1022
Normal
-0.4
393
Tumor
-0.5
341
Tumor
-0.5
874
Normal
-0.5
1015
Tumor
-0.6
395
Tumor
-0.6
746
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
