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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTN3A3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTN3A3 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
35.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.9
1015
Tumor
0.9
915
Tumor
0.9
966
Normal
0.8
861
Tumor
0.8
487
Tumor
0.7
914
Normal
0.7
262
Normal
0.7
188
Normal
0.7
113
Tumor
0.7
261
Tumor
0.6
686
Normal
0.6
922
Normal
0.6
663
Tumor
0.6
816
Normal
0.6
362
Normal
0.6
916
Normal
0.6
917
Tumor
0.6
952
Normal
0.6
954
Normal
0.5
518
Normal
0.5
114
Normal
0.5
721
Tumor
0.5
1031
Tumor
0.5
366
Normal
0.5
383
Tumor
0.5
823
Tumor
0.5
955
Tumor
0.5
492
Normal
0.5
456
Normal
0.5
123
Tumor
0.4
867
Tumor
0.4
126
Normal
0.4
258
Normal
0.4
311
Tumor
0.4
272
Normal
0.4
516
Normal
0.4
1016
Normal
0.4
468
Normal
0.4
386
Normal
0.4
332
Normal
0.4
968
Normal
0.4
664
Normal
0.4
926
Normal
0.4
218
Normal
0.4
741
Tumor
0.4
716
Normal
0.4
478
Normal
0.4
977
Tumor
0.4
358
Normal
0.4
172
Normal
0.4
938
Normal
0.4
428
Normal
0.4
493
Tumor
0.4
432
Normal
0.4
978
Normal
0.4
755
Tumor
0.4
956
Normal
0.3
353
Tumor
0.3
513
Tumor
0.3
666
Normal
0.3
192
Normal
0.3
467
Tumor
0.3
918
Normal
0.3
534
Normal
0.3
396
Normal
0.3
434
Normal
0.3
111
Normal
0.3
852
Normal
0.3
574
Normal
0.3
416
Normal
0.3
984
Normal
0.3
648
Normal
0.3
232
Normal
0.3
514
Normal
0.3
924
Normal
0.3
312
Normal
0.3
528
Normal
0.3
448
Normal
0.3
636
Normal
0.3
546
Normal
0.3
937
Tumor
0.3
141
Tumor
0.3
498
Normal
0.3
814
Normal
0.3
472
Normal
0.3
342
Normal
0.2
494
Normal
0.2
426
Normal
0.2
148
Normal
0.2
138
Normal
0.2
147
Tumor
0.2
424
Normal
0.2
414
Normal
0.2
228
Normal
0.2
553
Tumor
0.2
128
Normal
0.2
354
Normal
0.2
268
Normal
0.2
278
Normal
0.2
213
Tumor
0.2
778
Normal
0.2
672
Normal
0.2
866
Normal
0.2
524
Normal
0.2
777
Tumor
0.2
455
Tumor
0.2
554
Normal
0.2
412
Normal
0.2
356
Normal
0.2
1044
Normal
0.2
523
Tumor
0.2
786
Normal
0.2
538
Normal
0.2
913
Tumor
0.2
862
Normal
0.2
462
Normal
0.2
452
Normal
0.2
464
Normal
0.2
436
Normal
0.2
394
Normal
0.2
756
Normal
0.2
911
Tumor
0.2
136
Normal
0.2
474
Normal
0.1
482
Normal
0.1
124
Normal
0.1
344
Normal
0.1
422
Normal
0.1
618
Normal
0.1
1043
Tumor
0.1
964
Normal
0.1
142
Normal
0.1
314
Normal
0.1
976
Normal
0.1
491
Tumor
0.1
466
Normal
0.1
328
Normal
0.1
146
Normal
0.1
882
Normal
0.1
222
Normal
0.1
963
Tumor
0.1
186
Normal
0.1
137
Tumor
0.1
722
Normal
0.1
738
Normal
0.1
388
Normal
0.1
698
Normal
0.1
368
Normal
0.1
446
Normal
0.1
874
Normal
0.1
284
Normal
0.1
392
Normal
0.1
864
Normal
0.1
628
Normal
0.0
196
Normal
0.0
868
Normal
0.0
944
Normal
0.0
615
Tumor
0.0
185
Tumor
0.0
536
Normal
0.0
533
Tumor
0.0
695
Tumor
0.0
744
Normal
0.0
1022
Normal
0.0
1046
Normal
0.0
384
Normal
0.0
355
Tumor
0.0
364
Normal
0.0
746
Normal
0.0
415
Tumor
0.0
696
Normal
0.0
724
Normal
0.0
365
Tumor
0.0
863
Tumor
0.0
444
Normal
0.0
395
Tumor
0.0
572
Normal
0.0
723
Tumor
0.0
212
Normal
0.0
558
Normal
0.0
878
Normal
0.0
195
Tumor
0.0
728
Normal
0.0
461
Tumor
0.0
286
Normal
0.0
742
Normal
0.0
127
Tumor
0.0
982
Normal
0.0
818
Normal
0.0
617
Tumor
0.0
283
Tumor
0.0
616
Normal
0.0
313
Tumor
-0.1
376
Normal
-0.1
497
Tumor
-0.1
1045
Tumor
-0.1
211
Tumor
-0.1
217
Tumor
-0.1
635
Tumor
-0.1
352
Normal
-0.1
526
Normal
-0.1
343
Tumor
-0.1
341
Tumor
-0.1
132
Normal
-0.1
925
Tumor
-0.1
1042
Normal
-0.1
298
Normal
-0.1
481
Tumor
-0.1
981
Tumor
-0.1
1032
Normal
-0.1
447
Tumor
-0.1
824
Normal
-0.1
214
Normal
-0.2
557
Tumor
-0.2
423
Tumor
-0.2
564
Normal
-0.2
515
Tumor
-0.2
785
Tumor
-0.2
393
Tumor
-0.2
627
Tumor
-0.2
385
Tumor
-0.2
884
Normal
-0.2
813
Tumor
-0.2
714
Normal
-0.2
191
Tumor
-0.2
421
Tumor
-0.2
685
Tumor
-0.2
267
Tumor
-0.2
135
Tumor
-0.2
471
Tumor
-0.2
943
Tumor
-0.2
488
Normal
-0.2
642
Normal
-0.2
568
Normal
-0.2
975
Tumor
-0.2
1014
Normal
-0.3
858
Normal
-0.3
361
Tumor
-0.3
387
Tumor
-0.3
865
Tumor
-0.3
187
Tumor
-0.3
125
Tumor
-0.3
443
Tumor
-0.3
227
Tumor
-0.3
1028
Normal
-0.3
433
Tumor
-0.3
873
Tumor
-0.3
912
Normal
-0.3
391
Tumor
-0.3
145
Tumor
-0.4
257
Tumor
-0.4
857
Tumor
-0.4
745
Tumor
-0.4
1041
Tumor
-0.4
477
Tumor
-0.4
881
Tumor
-0.4
958
Normal
-0.4
953
Tumor
-0.4
647
Tumor
-0.4
231
Tumor
-0.4
573
Tumor
-0.4
923
Tumor
-0.4
1027
Tumor
-0.4
221
Tumor
-0.4
427
Tumor
-0.4
484
Normal
-0.5
715
Tumor
-0.5
535
Tumor
-0.5
465
Tumor
-0.5
957
Tumor
-0.5
883
Tumor
-0.5
171
Tumor
-0.5
517
Tumor
-0.5
951
Tumor
-0.5
224
Normal
-0.5
571
Tumor
-0.5
297
Tumor
-0.5
451
Tumor
-0.5
375
Tumor
-0.5
983
Tumor
-0.5
727
Tumor
-0.6
563
Tumor
-0.6
737
Tumor
-0.6
697
Tumor
-0.6
545
Tumor
-0.6
161
Tumor
-0.6
413
Tumor
-0.6
525
Tumor
-0.6
363
Tumor
-0.6
112
Tumor
-0.6
425
Tumor
-0.6
162
Normal
-0.6
965
Tumor
-0.7
367
Tumor
-0.7
431
Tumor
-0.7
223
Tumor
-0.7
277
Tumor
-0.7
473
Tumor
-0.7
527
Tumor
-0.7
817
Tumor
-0.7
665
Tumor
-0.7
357
Tumor
-0.7
445
Tumor
-0.7
271
Tumor
-0.7
713
Tumor
-0.8
351
Tumor
-0.8
483
Tumor
-0.8
641
Tumor
-0.8
463
Tumor
-0.8
411
Tumor
-0.9
921
Tumor
-0.9
662
Normal
-0.9
537
Tumor
-0.9
851
Tumor
-0.9
671
Tumor
-0.9
435
Tumor
-0.9
1013
Tumor
-0.9
567
Tumor
-1.0
331
Tumor
-1.0
877
Tumor
-1.0
1021
Tumor
-1.0
815
Tumor
-1.1
661
Tumor
-1.1
967
Tumor
-1.2
285
Tumor
-1.3
1026
Normal
-1.3
131
Tumor
-1.4
1025
Tumor
-1.6
743
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
