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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3349.4
nTPM
HPA Brain:
2353.0
nTPM
GTEx:
3349.4
nTPM
FANTOM5:
1228.9
Scaled Tags Per Million
Pig:
2709.0
nTPM
Mouse:
2762.3
nTPM
Allen mouse:
28.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2353.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1608.7
2019
Male, age 18, unknown
1830.6
2411
Female, age 72, unknown
1726.1
2586
Male, age 75, left hemisphere
1688.8
1827
Male, age 72, unknown
1687.1
2828
Female, age 72, unknown
1685.1
2666
Male, age 74, left hemisphere
1609.5
1870
Female, age 42, unknown
1551.0
1833
Male, age 53, unknown
1540.0
2219
Male, age 76, both hemispheres
1385.4
1830
Male, age 51, unknown
1383.8
Dorsal raphe nucleus nTPM: 1790.1
2298
Female, age 72, unknown
2087.6
2047
Male, age 72, unknown
1879.7
1828
Male, age 53, unknown
1841.0
2750
Male, age 76, both hemispheres
1744.8
2016
Female, age 72, unknown
1397.1
Inferior colliculus nTPM: 1683.4
2097
Female, age 72, unknown
1945.5
1890
Male, age 53, unknown
1827.3
1848
Female, age 42, unknown
1542.1
2849
Male, age 72, unknown
1418.8
Median raphe nucleus nTPM: 2353.0
2220
Male, age 76, midline
2353.0
Periaquaductal grey, anterior nTPM: 1701.2
1795
Male, age 51, unknown
1717.3
1947
Male, age 18, unknown
1710.2
2502
Female, age 75, unknown
1676.2
Periaquaductal grey, dorsal nTPM: 1364.5
1831
Male, age 72, unknown
1438.2
2850
Male, age 76, both hemispheres
1434.7
1840
Male, age 53, unknown
1341.4
2464
Female, age 72, unknown
1243.6
Periaquaductal grey, lateral nTPM: 1363.5
2272
Male, age 74, both hemispheres
1493.3
2053
Male, age 18, unknown
1347.6
2140
Male, age 76, both hemispheres
1249.7
Pretectal area nTPM: 1807.6
1817
Female, age 42, unknown
2325.8
1944
Female, age 72, unknown
2273.8
2007
Male, age 72, unknown
2148.8
1816
Male, age 51, unknown
2142.7
2667
Female, age 75, unknown
1932.0
1815
Male, age 53, unknown
1860.5
2273
Male, age 74, both hemispheres
1618.5
2224
Female, age 72, unknown
1571.4
2407
Male, age 75, both hemispheres
1438.5
2825
Male, age 18, unknown
1371.8
2316
Male, age 76, right hemisphere
1200.1
Red nucleus nTPM: 1728.8
1821
Female, age 72, unknown
2112.8
1865
Male, age 51, unknown
1848.6
2785
Male, age 18, unknown
1827.6
1954
Female, age 42, unknown
1825.9
2725
Female, age 75, unknown
1822.2
2823
Male, age 76, right hemisphere
1727.1
2503
Female, age 72, unknown
1718.1
2769
Male, age 72, unknown
1711.9
1904
Male, age 53, unknown
1691.1
2227
Male, age 72, unknown
1656.3
2588
Male, age 74, left hemisphere
1447.7
2584
Male, age 75, left hemisphere
1356.9
Substantia nigra nTPM: 2198.0
1916
Female, age 42, unknown
3320.9
1851
Male, age 51, unknown
2528.5
1941
Male, age 53, unknown
2323.1
1889
Female, age 72, unknown
2290.6
2241
Male, age 72, unknown
2246.2
2699
Male, age 18, unknown
2185.1
2665
Male, age 74, both hemispheres
1989.7
2409
Female, age 72, unknown
1982.5
2590
Female, age 75, unknown
1568.2
2583
Male, age 75, right hemisphere
1544.9
Superior colliculus nTPM: 1601.5
2087
Female, age 72, unknown
1994.0
2668
Female, age 75, unknown
1902.4
1796
Male, age 53, unknown
1753.4
2261
Male, age 18, unknown
1660.1
2587
Male, age 74, left hemisphere
1638.5
2664
Male, age 75, both hemispheres
1591.6
1913
Female, age 42, unknown
1519.6
1895
Male, age 76, right hemisphere
1340.3
1839
Male, age 51, unknown
1315.8
1995
Male, age 72, unknown
1299.4
Ventral tegmental area nTPM: 2001.3
1915
Female, age 42, unknown
2416.9
2410
Female, age 72, unknown
2338.5
2218
Male, age 76, both hemispheres
2202.6
2223
Female, age 72, unknown
1791.3
1942
Male, age 51, unknown
1776.1
2021
Male, age 53, unknown
1482.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3349.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3349.4
Samples: 139
Max nTPM: 6634.3
Min nTPM: 1778.6
Std nTPM: 791.0
Median nTPM: 3242.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6634.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
5551.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5066.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5005.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4941.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
4881.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4856.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
4676.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4578.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
4558.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
4505.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4480.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
4479.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4434.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
4434.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
4425.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
4408.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
4235.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
4218.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4199.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4187.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
4147.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
4139.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
4135.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
4126.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4103.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
4039.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
4019.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
4016.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3962.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
3888.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
3866.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3856.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3836.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
3833.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3811.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
3742.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
3713.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
3712.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
3662.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
3635.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3621.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3617.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3612.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3600.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
3591.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3587.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
3561.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
3558.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3552.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3548.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
3533.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3529.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3490.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
3415.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3392.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
3358.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3352.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
3333.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
3333.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
3324.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3301.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
3292.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3288.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
3255.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3252.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
3248.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3245.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3244.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
3242.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
3219.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
3213.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3213.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
3193.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
3191.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3160.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3159.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
3156.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3150.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3149.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3120.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3090.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3047.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
3044.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
3043.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3036.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
3035.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
3030.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
3029.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
3029.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3026.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3023.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3022.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
3022.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3002.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2991.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
2975.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2964.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2959.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2903.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2900.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2899.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
2892.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2847.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
2796.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2771.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2750.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2744.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2732.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2724.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2705.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2683.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2671.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
2668.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2646.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2640.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
2635.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2622.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2581.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
2581.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
2576.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2541.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
2523.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2452.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2385.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2360.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2315.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2312.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2279.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2246.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2228.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2185.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2137.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2132.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2069.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
2050.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1998.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1997.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1778.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2762.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2762.3
Samples: 4
Max nTPM: 2852.6
Min nTPM: 2665.4
Sample A
Male
2852.6
Sample B
Male
2684.7
Sample C
Female
2665.4
Sample D
Female
2846.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.