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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2773.3
nTPM
HPA Brain:
1821.0
nTPM
GTEx:
2773.3
nTPM
FANTOM5:
1506.7
Scaled Tags Per Million
Pig:
2463.3
nTPM
Mouse:
3226.4
nTPM
Allen mouse:
32.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA040067
Antibody HPA061280
Antibody CAB005197
Antibody CAB016392
Antibody CAB079968
Glial cells
Not detected
Low
Low
Medium
Not detected
Neuronal cells
Medium
Low
Medium
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1821.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 1672.1
1898
Male, age 80, left hemisphere
2092.4
1855
Male, age 76, left hemisphere
1757.7
2621
Female, age 67, right hemisphere
1678.9
2529
Female, age 94, left hemisphere
1641.5
2148
Female, age 91, left hemisphere
1456.8
1911
Female, age 85, right hemisphere
1405.1
Dentate gyrus nTPM: 1614.5
2010
Male, age 76, both hemispheres
2190.3
2530
Female, age 94, left hemisphere
1720.8
1927
Female, age 91, both hemispheres
1576.0
2528
Male, age 74, both hemispheres
1536.9
2246
Female, age 85, both hemispheres
1497.3
2531
Female, age 67, both hemispheres
1165.8
Entorhinal gyrus nTPM: 1497.1
2764
Male, age 80, right hemisphere
1805.0
1938
Female, age 85, left hemisphere
1610.8
1787
Male, age 76, left hemisphere
1478.3
2117
Female, age 91, right hemisphere
1474.6
2686
Male, age 75, right hemisphere
1366.6
2613
Female, age 94, left hemisphere
1247.4
Hippocampus, CA1 nTPM: 1821.0
2749
Male, age 80, left hemisphere
2393.1
2527
Male, age 74, both hemispheres
1941.5
2045
Male, age 76, both hemispheres
1828.5
1873
Female, age 85, both hemispheres
1541.9
2082
Female, age 91, right hemisphere
1400.2
Hippocampus, CA2 nTPM: 1656.0
2249
Male, age 74, both hemispheres
1928.8
1892
Male, age 76, both hemispheres
1867.7
1963
Male, age 80, left hemisphere
1792.3
2437
Female, age 94, left hemisphere
1578.8
1940
Female, age 85, left hemisphere
1390.6
2113
Female, age 91, right hemisphere
1377.9
Hippocampus, CA3 nTPM: 1615.3
2436
Male, age 74, both hemispheres
1983.1
1867
Male, age 76, both hemispheres
1897.0
2137
Male, age 80, left hemisphere
1764.5
1891
Female, age 85, both hemispheres
1406.9
2861
Female, age 67, both hemispheres
1322.7
2620
Female, age 94, left hemisphere
1317.8
Parahippocampal cortex nTPM: 1565.3
2018
Male, age 76, both hemispheres
1903.7
1850
Male, age 80, both hemispheres
1736.6
2245
Female, age 91, both hemispheres
1724.8
2250
Female, age 67, right hemisphere
1692.3
1933
Female, age 85, both hemispheres
1573.1
2532
Female, age 72, left hemisphere
1558.0
1990
Female, age 91, right hemisphere
1545.9
2692
Male, age 74, both hemispheres
1371.9
2693
Female, age 94, both hemispheres
1279.4
2622
Female, age 67, right hemisphere
1267.5
Perirhinal gyrus nTPM: 1735.2
1847
Female, age 91, left hemisphere
2091.5
1794
Male, age 80, right hemisphere
1900.4
2521
Female, age 94, right hemisphere
1738.8
1841
Female, age 85, right hemisphere
1716.3
2848
Male, age 76, right hemisphere
1229.0
Subiculum nTPM: 1564.7
1901
Male, age 80, both hemispheres
1716.1
2619
Male, age 74, both hemispheres
1613.9
1977
Female, age 85, both hemispheres
1609.6
2438
Female, age 94, left hemisphere
1607.9
2042
Male, age 76, both hemispheres
1558.8
2729
Female, age 91, right hemisphere
1281.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2773.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 2773.3
Samples: 197
Max nTPM: 4995.1
Min nTPM: 1435.8
Std nTPM: 635.7
Median nTPM: 2728.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
4995.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
4884.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
4570.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
4490.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
4257.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
4221.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
4206.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
4020.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
3968.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
3963.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
3946.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
3903.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
3767.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
3756.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
3749.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
3738.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
3658.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
3574.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
3564.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
3553.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
3530.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
3513.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
3497.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
3466.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
3452.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
3446.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
3438.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
3414.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
3402.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
3401.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
3390.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
3388.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
3368.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
3356.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
3351.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
3337.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
3274.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
3269.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
3256.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
3253.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
3252.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
3212.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
3209.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
3209.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
3180.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
3177.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
3166.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
3148.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
3136.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
3128.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
3113.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
3099.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
3079.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
3076.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
3074.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
3053.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
3034.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
3026.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
3012.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
3010.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
2994.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
2994.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
2993.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
2985.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
2982.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
2981.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
2974.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
2962.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
2949.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
2949.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
2933.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
2923.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
2904.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
2898.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
2893.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
2891.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
2891.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
2891.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
2889.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
2888.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
2881.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
2877.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
2871.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
2855.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
2853.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
2828.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
2822.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
2821.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
2819.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
2810.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
2802.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
2792.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
2778.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
2762.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
2756.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
2749.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
2746.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
2732.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
2728.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2706.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
2701.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
2684.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
2664.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
2662.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
2660.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
2654.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
2653.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
2642.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
2602.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
2591.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
2589.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
2584.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
2578.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
2573.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
2571.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
2570.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
2567.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
2559.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
2552.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
2550.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
2537.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
2537.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
2536.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2532.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
2507.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
2504.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
2500.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
2495.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
2485.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
2482.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
2481.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
2470.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
2467.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
2444.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
2444.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
2422.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
2418.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
2403.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
2402.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
2400.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
2396.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
2391.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
2387.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
2387.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2383.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
2371.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
2366.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
2358.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
2352.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
2350.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
2346.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
2329.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
2324.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
2318.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
2316.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
2312.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
2312.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
2299.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
2278.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
2272.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
2261.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
2257.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
2254.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
2216.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
2214.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
2176.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
2164.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
2151.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
2116.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
2115.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
2099.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
2088.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
2063.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
2048.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
2034.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
2033.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1998.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1992.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1972.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
1969.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1966.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
1949.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1942.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
1920.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1919.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1896.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1795.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
1771.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
1724.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
1715.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
1713.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
1703.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1686.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
1623.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
1593.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
1443.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
1435.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3226.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 3120.9
Samples: 4
Max nTPM: 3618.3
Min nTPM: 2839.3
Sample A
Male
2854.4
Sample B
Male
2839.3
Sample C
Female
3171.7
Sample D
Female
3618.3
Hippocampal formation nTPM: 3226.4
Samples: 4
Max nTPM: 3525.6
Min nTPM: 3006.8
Sample A
Male
3236.7
Sample B
Male
3006.8
Sample C
Female
3525.6
Sample D
Female
3136.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.