We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB5B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
131.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
100.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
94.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
79.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
74.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
72.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
64.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
61.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
56.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
56.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
56.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
50.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
50.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
47.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
44.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
42.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
40.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
40.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB5B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.6
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
111.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
85.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
81.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
81.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
75.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
75.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
74.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
72.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
70.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
65.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
64.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
63.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
62.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
62.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
55.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
55.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
55.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
55.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
53.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
52.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
52.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
51.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
51.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
49.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
49.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
48.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
48.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
48.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
47.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
47.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
43.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
41.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
34.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
741
Tumor
0.5
813
Tumor
0.4
171
Tumor
0.4
231
Tumor
0.3
125
Tumor
0.3
877
Tumor
0.3
724
Normal
0.3
123
Tumor
0.3
953
Tumor
0.3
824
Normal
0.3
715
Tumor
0.2
713
Tumor
0.2
127
Tumor
0.2
186
Normal
0.2
148
Normal
0.2
482
Normal
0.2
882
Normal
0.2
627
Tumor
0.2
436
Normal
0.2
818
Normal
0.2
124
Normal
0.2
147
Tumor
0.2
685
Tumor
0.2
451
Tumor
0.2
462
Normal
0.2
192
Normal
0.2
786
Normal
0.2
567
Tumor
0.2
432
Normal
0.2
162
Normal
0.2
112
Tumor
0.2
172
Normal
0.2
356
Normal
0.2
142
Normal
0.2
343
Tumor
0.2
884
Normal
0.2
981
Tumor
0.2
298
Normal
0.2
778
Normal
0.2
446
Normal
0.2
196
Normal
0.2
851
Tumor
0.2
666
Normal
0.2
332
Normal
0.2
472
Normal
0.2
528
Normal
0.2
314
Normal
0.2
964
Normal
0.2
384
Normal
0.2
665
Tumor
0.2
816
Normal
0.2
672
Normal
0.1
412
Normal
0.1
944
Normal
0.1
218
Normal
0.1
478
Normal
0.1
466
Normal
0.1
815
Tumor
0.1
328
Normal
0.1
358
Normal
0.1
723
Tumor
0.1
351
Tumor
0.1
131
Tumor
0.1
354
Normal
0.1
662
Normal
0.1
488
Normal
0.1
648
Normal
0.1
536
Normal
0.1
664
Normal
0.1
756
Normal
0.1
352
Normal
0.1
188
Normal
0.1
978
Normal
0.1
136
Normal
0.1
982
Normal
0.1
311
Tumor
0.1
1014
Normal
0.1
1046
Normal
0.1
921
Tumor
0.1
912
Normal
0.1
132
Normal
0.1
738
Normal
0.1
138
Normal
0.1
376
Normal
0.1
111
Normal
0.1
615
Tumor
0.1
344
Normal
0.1
222
Normal
0.1
572
Normal
0.1
126
Normal
0.1
858
Normal
0.1
342
Normal
0.1
368
Normal
0.1
938
Normal
0.1
312
Normal
0.1
513
Tumor
0.1
1026
Normal
0.1
866
Normal
0.1
484
Normal
0.1
128
Normal
0.1
1044
Normal
0.1
663
Tumor
0.1
984
Normal
0.1
686
Normal
0.1
922
Normal
0.1
1016
Normal
0.1
746
Normal
0.1
422
Normal
0.1
911
Tumor
0.1
671
Tumor
0.1
465
Tumor
0.1
114
Normal
0.1
232
Normal
0.1
777
Tumor
0.1
636
Normal
0.1
426
Normal
0.1
878
Normal
0.1
864
Normal
0.1
716
Normal
0.1
392
Normal
0.1
976
Normal
0.1
957
Tumor
0.1
428
Normal
0.1
517
Tumor
0.1
261
Tumor
0.1
434
Normal
0.1
727
Tumor
0.1
494
Normal
0.1
558
Normal
0.1
958
Normal
0.1
744
Normal
0.1
968
Normal
0.1
628
Normal
0.1
214
Normal
0.1
852
Normal
0.1
135
Tumor
0.1
564
Normal
0.1
863
Tumor
0.1
515
Tumor
0.1
518
Normal
0.1
874
Normal
0.1
742
Normal
0.1
415
Tumor
0.1
364
Normal
0.1
568
Normal
0.1
211
Tumor
0.1
728
Normal
0.1
421
Tumor
0.1
424
Normal
0.1
1032
Normal
0.1
574
Normal
0.1
474
Normal
0.0
258
Normal
0.0
563
Tumor
0.0
481
Tumor
0.0
924
Normal
0.0
431
Tumor
0.0
714
Normal
0.0
917
Tumor
0.0
257
Tumor
0.0
954
Normal
0.0
146
Normal
0.0
616
Normal
0.0
526
Normal
0.0
1022
Normal
0.0
618
Normal
0.0
217
Tumor
0.0
365
Tumor
0.0
456
Normal
0.0
396
Normal
0.0
491
Tumor
0.0
514
Normal
0.0
1045
Tumor
0.0
867
Tumor
0.0
926
Normal
0.0
1028
Normal
0.0
357
Tumor
0.0
278
Normal
0.0
464
Normal
0.0
444
Normal
0.0
394
Normal
0.0
283
Tumor
0.0
224
Normal
0.0
363
Tumor
0.0
698
Normal
0.0
492
Normal
0.0
414
Normal
0.0
527
Tumor
0.0
722
Normal
0.0
534
Normal
0.0
952
Normal
0.0
785
Tumor
0.0
1042
Normal
0.0
956
Normal
0.0
546
Normal
0.0
1013
Tumor
0.0
448
Normal
0.0
498
Normal
0.0
341
Tumor
0.0
573
Tumor
0.0
452
Normal
0.0
918
Normal
0.0
916
Normal
0.0
696
Normal
0.0
286
Normal
0.0
553
Tumor
0.0
915
Tumor
0.0
362
Normal
0.0
914
Normal
0.0
416
Normal
0.0
386
Normal
0.0
366
Normal
0.0
353
Tumor
0.0
862
Normal
0.0
113
Tumor
0.0
297
Tumor
0.0
967
Tumor
0.0
212
Normal
0.0
455
Tumor
0.0
145
Tumor
0.0
937
Tumor
0.0
228
Normal
0.0
966
Normal
0.0
524
Normal
0.0
327
Tumor
0.0
814
Normal
0.0
367
Tumor
0.0
868
Normal
0.0
823
Tumor
0.0
187
Tumor
0.0
461
Tumor
0.0
262
Normal
0.0
554
Normal
0.0
221
Tumor
-0.1
721
Tumor
-0.1
468
Normal
-0.1
425
Tumor
-0.1
447
Tumor
-0.1
642
Normal
-0.1
1015
Tumor
-0.1
516
Normal
-0.1
161
Tumor
-0.1
272
Normal
-0.1
268
Normal
-0.1
313
Tumor
-0.1
435
Tumor
-0.1
223
Tumor
-0.1
483
Tumor
-0.1
284
Normal
-0.1
1031
Tumor
-0.1
433
Tumor
-0.1
285
Tumor
-0.1
537
Tumor
-0.1
857
Tumor
-0.1
493
Tumor
-0.1
1021
Tumor
-0.1
861
Tumor
-0.1
443
Tumor
-0.1
388
Normal
-0.1
817
Tumor
-0.1
1043
Tumor
-0.1
983
Tumor
-0.1
137
Tumor
-0.1
413
Tumor
-0.1
695
Tumor
-0.1
391
Tumor
-0.1
191
Tumor
-0.1
697
Tumor
-0.1
925
Tumor
-0.1
977
Tumor
-0.1
545
Tumor
-0.1
538
Normal
-0.1
185
Tumor
-0.1
213
Tumor
-0.1
227
Tumor
-0.1
361
Tumor
-0.1
883
Tumor
-0.1
271
Tumor
-0.1
661
Tumor
-0.1
943
Tumor
-0.1
463
Tumor
-0.1
383
Tumor
-0.1
1025
Tumor
-0.1
1041
Tumor
-0.1
951
Tumor
-0.1
557
Tumor
-0.1
331
Tumor
-0.1
955
Tumor
-0.1
423
Tumor
-0.1
873
Tumor
-0.1
881
Tumor
-0.2
647
Tumor
-0.2
617
Tumor
-0.2
755
Tumor
-0.2
467
Tumor
-0.2
471
Tumor
-0.2
195
Tumor
-0.2
641
Tumor
-0.2
477
Tumor
-0.2
571
Tumor
-0.2
963
Tumor
-0.2
385
Tumor
-0.2
411
Tumor
-0.2
445
Tumor
-0.2
525
Tumor
-0.2
743
Tumor
-0.2
923
Tumor
-0.2
277
Tumor
-0.2
267
Tumor
-0.2
635
Tumor
-0.2
745
Tumor
-0.2
913
Tumor
-0.2
865
Tumor
-0.2
393
Tumor
-0.2
497
Tumor
-0.2
141
Tumor
-0.2
975
Tumor
-0.2
487
Tumor
-0.2
395
Tumor
-0.3
523
Tumor
-0.3
737
Tumor
-0.3
965
Tumor
-0.3
375
Tumor
-0.3
387
Tumor
-0.4
427
Tumor
-0.4
535
Tumor
-0.4
355
Tumor
-0.4
533
Tumor
-0.4
473
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
