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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGFOD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGFOD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.4
Number of samples
231
Samples
Sample
Description
TPM
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.2
171
Tumor
0.9
435
Tumor
0.7
465
Tumor
0.7
123
Tumor
0.6
137
Tumor
0.6
391
Tumor
0.6
112
Tumor
0.6
571
Tumor
0.6
222
Normal
0.5
261
Tumor
0.5
141
Tumor
0.5
648
Normal
0.5
436
Normal
0.5
387
Tumor
0.5
487
Tumor
0.5
196
Normal
0.5
482
Normal
0.5
662
Normal
0.5
262
Normal
0.5
1032
Normal
0.4
172
Normal
0.4
911
Tumor
0.4
866
Normal
0.4
162
Normal
0.4
267
Tumor
0.4
666
Normal
0.4
664
Normal
0.4
755
Tumor
0.4
456
Normal
0.4
423
Tumor
0.4
1016
Normal
0.4
627
Tumor
0.4
114
Normal
0.4
981
Tumor
0.4
1013
Tumor
0.4
568
Normal
0.4
484
Normal
0.4
958
Normal
0.4
231
Tumor
0.4
824
Normal
0.4
132
Normal
0.4
258
Normal
0.4
513
Tumor
0.4
272
Normal
0.4
148
Normal
0.4
422
Normal
0.4
432
Normal
0.4
937
Tumor
0.4
363
Tumor
0.4
124
Normal
0.3
358
Normal
0.3
464
Normal
0.3
534
Normal
0.3
452
Normal
0.3
572
Normal
0.3
862
Normal
0.3
546
Normal
0.3
663
Tumor
0.3
393
Tumor
0.3
742
Normal
0.3
564
Normal
0.3
462
Normal
0.3
286
Normal
0.3
443
Tumor
0.3
912
Normal
0.3
138
Normal
0.3
642
Normal
0.3
618
Normal
0.3
128
Normal
0.3
858
Normal
0.3
964
Normal
0.3
746
Normal
0.3
468
Normal
0.3
426
Normal
0.3
448
Normal
0.3
394
Normal
0.3
416
Normal
0.3
924
Normal
0.3
574
Normal
0.3
341
Tumor
0.3
966
Normal
0.3
647
Tumor
0.3
925
Tumor
0.3
926
Normal
0.3
1015
Tumor
0.3
424
Normal
0.3
356
Normal
0.3
786
Normal
0.3
111
Normal
0.3
214
Normal
0.3
952
Normal
0.2
386
Normal
0.2
874
Normal
0.2
342
Normal
0.2
514
Normal
0.2
635
Tumor
0.2
212
Normal
0.2
756
Normal
0.2
868
Normal
0.2
446
Normal
0.2
915
Tumor
0.2
298
Normal
0.2
228
Normal
0.2
554
Normal
0.2
563
Tumor
0.2
914
Normal
0.2
976
Normal
0.2
365
Tumor
0.2
314
Normal
0.2
364
Normal
0.2
878
Normal
0.2
744
Normal
0.2
864
Normal
0.2
414
Normal
0.2
1046
Normal
0.2
518
Normal
0.2
977
Tumor
0.2
1026
Normal
0.2
451
Tumor
0.2
136
Normal
0.2
865
Tumor
0.2
428
Normal
0.2
146
Normal
0.2
466
Normal
0.2
388
Normal
0.2
698
Normal
0.2
738
Normal
0.2
412
Normal
0.2
938
Normal
0.2
1022
Normal
0.1
716
Normal
0.1
1045
Tumor
0.1
884
Normal
0.1
1042
Normal
0.1
636
Normal
0.1
615
Tumor
0.1
714
Normal
0.1
232
Normal
0.1
278
Normal
0.1
1014
Normal
0.1
944
Normal
0.1
916
Normal
0.1
918
Normal
0.1
366
Normal
0.1
852
Normal
0.1
396
Normal
0.1
488
Normal
0.1
515
Tumor
0.1
617
Tumor
0.1
411
Tumor
0.1
715
Tumor
0.1
474
Normal
0.1
628
Normal
0.1
528
Normal
0.1
218
Normal
0.1
882
Normal
0.1
956
Normal
0.1
955
Tumor
0.1
816
Normal
0.1
433
Tumor
0.1
188
Normal
0.1
1044
Normal
0.1
741
Tumor
0.1
434
Normal
0.1
616
Normal
0.1
355
Tumor
0.1
665
Tumor
0.1
257
Tumor
0.1
695
Tumor
0.1
785
Tumor
0.1
376
Normal
0.1
277
Tumor
0.1
696
Normal
0.1
526
Normal
0.1
968
Normal
0.1
142
Normal
0.1
778
Normal
0.1
392
Normal
0.1
268
Normal
0.1
922
Normal
0.1
984
Normal
0.0
982
Normal
0.0
331
Tumor
0.0
444
Normal
0.0
472
Normal
0.0
357
Tumor
0.0
1031
Tumor
0.0
127
Tumor
0.0
978
Normal
0.0
975
Tumor
0.0
983
Tumor
0.0
538
Normal
0.0
415
Tumor
0.0
1028
Normal
0.0
312
Normal
0.0
516
Normal
0.0
963
Tumor
0.0
954
Normal
0.0
478
Normal
0.0
328
Normal
0.0
957
Tumor
0.0
186
Normal
0.0
481
Tumor
0.0
558
Normal
0.0
722
Normal
0.0
867
Tumor
0.0
461
Tumor
0.0
332
Normal
0.0
327
Tumor
0.0
313
Tumor
0.0
145
Tumor
0.0
368
Normal
0.0
951
Tumor
0.0
913
Tumor
0.0
195
Tumor
-0.1
545
Tumor
-0.1
728
Normal
-0.1
573
Tumor
-0.1
686
Normal
-0.1
857
Tumor
-0.1
221
Tumor
-0.1
494
Normal
-0.1
535
Tumor
-0.1
497
Tumor
-0.1
1041
Tumor
-0.1
361
Tumor
-0.1
147
Tumor
-0.1
873
Tumor
-0.1
384
Normal
-0.1
672
Normal
-0.1
861
Tumor
-0.1
354
Normal
-0.1
477
Tumor
-0.1
498
Normal
-0.1
344
Normal
-0.1
362
Normal
-0.1
113
Tumor
-0.2
723
Tumor
-0.2
967
Tumor
-0.2
161
Tumor
-0.2
524
Normal
-0.2
777
Tumor
-0.2
953
Tumor
-0.2
126
Normal
-0.2
284
Normal
-0.2
553
Tumor
-0.2
383
Tumor
-0.2
493
Tumor
-0.2
463
Tumor
-0.2
353
Tumor
-0.2
192
Normal
-0.2
1025
Tumor
-0.2
421
Tumor
-0.2
818
Normal
-0.2
352
Normal
-0.2
125
Tumor
-0.2
217
Tumor
-0.3
685
Tumor
-0.3
641
Tumor
-0.3
227
Tumor
-0.3
877
Tumor
-0.3
1043
Tumor
-0.3
445
Tumor
-0.3
473
Tumor
-0.3
213
Tumor
-0.3
557
Tumor
-0.3
814
Normal
-0.4
271
Tumor
-0.4
425
Tumor
-0.4
536
Normal
-0.4
224
Normal
-0.4
517
Tumor
-0.4
395
Tumor
-0.4
721
Tumor
-0.4
375
Tumor
-0.4
525
Tumor
-0.4
223
Tumor
-0.4
185
Tumor
-0.4
297
Tumor
-0.4
455
Tumor
-0.4
713
Tumor
-0.5
135
Tumor
-0.5
492
Normal
-0.5
131
Tumor
-0.5
537
Tumor
-0.5
923
Tumor
-0.5
187
Tumor
-0.5
745
Tumor
-0.5
567
Tumor
-0.5
921
Tumor
-0.5
343
Tumor
-0.5
283
Tumor
-0.5
917
Tumor
-0.5
815
Tumor
-0.5
823
Tumor
-0.5
737
Tumor
-0.6
813
Tumor
-0.6
447
Tumor
-0.6
527
Tumor
-0.6
523
Tumor
-0.6
367
Tumor
-0.6
413
Tumor
-0.6
471
Tumor
-0.6
351
Tumor
-0.6
743
Tumor
-0.6
851
Tumor
-0.6
965
Tumor
-0.6
427
Tumor
-0.6
1021
Tumor
-0.6
491
Tumor
-0.6
431
Tumor
-0.6
883
Tumor
-0.6
191
Tumor
-0.7
483
Tumor
-0.7
285
Tumor
-0.7
671
Tumor
-0.7
661
Tumor
-0.7
943
Tumor
-0.7
881
Tumor
-0.7
817
Tumor
-0.7
724
Normal
-0.8
863
Tumor
-0.8
697
Tumor
-0.8
211
Tumor
-0.8
385
Tumor
-0.9
727
Tumor
-0.9
311
Tumor
-1.0
1027
Tumor
-1.0
467
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
