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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDKN1B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
70.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
54.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDKN1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.2
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
65.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
53.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.6
744
Normal
1.4
465
Tumor
1.3
741
Tumor
1.1
413
Tumor
1.0
112
Tumor
1.0
755
Tumor
1.0
523
Tumor
1.0
411
Tumor
1.0
355
Tumor
0.9
954
Normal
0.8
984
Normal
0.8
554
Normal
0.8
498
Normal
0.8
192
Normal
0.8
672
Normal
0.7
538
Normal
0.7
492
Normal
0.7
944
Normal
0.7
478
Normal
0.7
663
Tumor
0.7
384
Normal
0.7
488
Normal
0.7
313
Tumor
0.7
571
Tumor
0.6
516
Normal
0.6
1025
Tumor
0.6
553
Tumor
0.6
981
Tumor
0.6
484
Normal
0.6
1015
Tumor
0.5
1041
Tumor
0.5
357
Tumor
0.5
224
Normal
0.5
922
Normal
0.5
938
Normal
0.5
546
Normal
0.5
778
Normal
0.5
686
Normal
0.5
912
Normal
0.5
937
Tumor
0.5
878
Normal
0.4
423
Tumor
0.4
352
Normal
0.4
957
Tumor
0.4
867
Tumor
0.4
415
Tumor
0.4
524
Normal
0.4
146
Normal
0.4
865
Tumor
0.4
924
Normal
0.4
958
Normal
0.4
574
Normal
0.4
376
Normal
0.4
823
Tumor
0.4
444
Normal
0.4
536
Normal
0.4
572
Normal
0.4
211
Tumor
0.4
882
Normal
0.4
493
Tumor
0.3
298
Normal
0.3
1014
Normal
0.3
392
Normal
0.3
342
Normal
0.3
545
Tumor
0.3
915
Tumor
0.3
968
Normal
0.3
716
Normal
0.3
344
Normal
0.3
874
Normal
0.3
535
Tumor
0.3
563
Tumor
0.3
467
Tumor
0.3
714
Normal
0.3
494
Normal
0.3
518
Normal
0.3
952
Normal
0.3
368
Normal
0.3
497
Tumor
0.3
861
Tumor
0.3
362
Normal
0.2
963
Tumor
0.2
966
Normal
0.2
383
Tumor
0.2
964
Normal
0.2
746
Normal
0.2
724
Normal
0.2
212
Normal
0.2
721
Tumor
0.2
142
Normal
0.2
431
Tumor
0.2
943
Tumor
0.2
228
Normal
0.2
366
Normal
0.2
161
Tumor
0.2
816
Normal
0.2
911
Tumor
0.2
926
Normal
0.2
1013
Tumor
0.2
975
Tumor
0.2
558
Normal
0.2
918
Normal
0.2
1044
Normal
0.2
662
Normal
0.2
884
Normal
0.2
286
Normal
0.2
696
Normal
0.2
386
Normal
0.2
364
Normal
0.2
742
Normal
0.2
434
Normal
0.2
1026
Normal
0.2
1028
Normal
0.2
642
Normal
0.2
786
Normal
0.2
482
Normal
0.2
396
Normal
0.2
477
Tumor
0.2
472
Normal
0.2
917
Tumor
0.2
967
Tumor
0.1
976
Normal
0.1
982
Normal
0.1
277
Tumor
0.1
818
Normal
0.1
756
Normal
0.1
131
Tumor
0.1
491
Tumor
0.1
135
Tumor
0.1
727
Tumor
0.1
528
Normal
0.1
412
Normal
0.1
664
Normal
0.1
685
Tumor
0.1
456
Normal
0.1
916
Normal
0.1
814
Normal
0.1
857
Tumor
0.1
363
Tumor
0.1
923
Tumor
0.1
1022
Normal
0.1
534
Normal
0.1
665
Tumor
0.1
365
Tumor
0.1
375
Tumor
0.1
481
Tumor
0.1
311
Tumor
0.1
785
Tumor
0.1
862
Normal
0.1
284
Normal
0.1
851
Tumor
0.0
126
Normal
0.0
573
Tumor
0.0
526
Normal
0.0
852
Normal
0.0
568
Normal
0.0
218
Normal
0.0
186
Normal
0.0
1016
Normal
0.0
824
Normal
0.0
217
Tumor
0.0
111
Normal
0.0
148
Normal
0.0
883
Tumor
0.0
416
Normal
0.0
873
Tumor
0.0
393
Tumor
0.0
188
Normal
0.0
312
Normal
0.0
421
Tumor
0.0
227
Tumor
0.0
446
Normal
0.0
864
Normal
0.0
426
Normal
0.0
1032
Normal
0.0
745
Tumor
0.0
647
Tumor
0.0
978
Normal
0.0
698
Normal
0.0
483
Tumor
0.0
877
Tumor
0.0
424
Normal
0.0
297
Tumor
0.0
666
Normal
0.0
628
Normal
0.0
464
Normal
0.0
462
Normal
0.0
866
Normal
-0.1
1046
Normal
-0.1
738
Normal
-0.1
914
Normal
-0.1
881
Tumor
-0.1
723
Tumor
-0.1
448
Normal
-0.1
525
Tumor
-0.1
268
Normal
-0.1
564
Normal
-0.1
278
Normal
-0.1
728
Normal
-0.1
138
Normal
-0.1
353
Tumor
-0.1
722
Normal
-0.1
267
Tumor
-0.1
452
Normal
-0.1
953
Tumor
-0.1
433
Tumor
-0.1
162
Normal
-0.1
432
Normal
-0.1
394
Normal
-0.1
327
Tumor
-0.1
447
Tumor
-0.1
328
Normal
-0.1
221
Tumor
-0.1
737
Tumor
-0.1
648
Normal
-0.1
223
Tumor
-0.1
124
Normal
-0.1
537
Tumor
-0.1
474
Normal
-0.1
1031
Tumor
-0.1
388
Normal
-0.1
513
Tumor
-0.1
137
Tumor
-0.1
697
Tumor
-0.1
191
Tumor
-0.1
1042
Normal
-0.1
196
Normal
-0.1
977
Tumor
-0.1
455
Tumor
-0.1
195
Tumor
-0.1
354
Normal
-0.2
113
Tumor
-0.2
222
Normal
-0.2
868
Normal
-0.2
858
Normal
-0.2
428
Normal
-0.2
715
Tumor
-0.2
487
Tumor
-0.2
514
Normal
-0.2
261
Tumor
-0.2
114
Normal
-0.2
387
Tumor
-0.2
331
Tumor
-0.2
213
Tumor
-0.2
145
Tumor
-0.2
515
Tumor
-0.2
214
Normal
-0.2
466
Normal
-0.2
185
Tumor
-0.2
451
Tumor
-0.2
436
Normal
-0.2
1045
Tumor
-0.2
956
Normal
-0.2
468
Normal
-0.2
332
Normal
-0.2
1043
Tumor
-0.2
983
Tumor
-0.2
414
Normal
-0.2
636
Normal
-0.2
618
Normal
-0.2
356
Normal
-0.2
172
Normal
-0.2
232
Normal
-0.2
471
Tumor
-0.2
473
Tumor
-0.3
925
Tumor
-0.3
361
Tumor
-0.3
817
Tumor
-0.3
385
Tumor
-0.3
425
Tumor
-0.3
272
Normal
-0.3
815
Tumor
-0.3
517
Tumor
-0.3
813
Tumor
-0.3
187
Tumor
-0.3
422
Normal
-0.3
461
Tumor
-0.3
395
Tumor
-0.3
147
Tumor
-0.3
343
Tumor
-0.3
341
Tumor
-0.3
955
Tumor
-0.3
615
Tumor
-0.4
358
Normal
-0.4
285
Tumor
-0.4
913
Tumor
-0.4
777
Tumor
-0.4
527
Tumor
-0.4
713
Tumor
-0.4
533
Tumor
-0.4
743
Tumor
-0.4
617
Tumor
-0.4
641
Tumor
-0.5
136
Normal
-0.5
314
Normal
-0.5
616
Normal
-0.5
132
Normal
-0.5
567
Tumor
-0.5
463
Tumor
-0.5
661
Tumor
-0.5
127
Tumor
-0.5
557
Tumor
-0.5
258
Normal
-0.5
391
Tumor
-0.5
351
Tumor
-0.6
271
Tumor
-0.6
171
Tumor
-0.6
262
Normal
-0.6
123
Tumor
-0.6
128
Normal
-0.6
367
Tumor
-0.6
921
Tumor
-0.6
863
Tumor
-0.6
283
Tumor
-0.6
445
Tumor
-0.6
965
Tumor
-0.6
427
Tumor
-0.7
141
Tumor
-0.7
125
Tumor
-0.7
443
Tumor
-0.7
1027
Tumor
-0.8
1021
Tumor
-0.8
627
Tumor
-0.8
671
Tumor
-0.9
231
Tumor
-0.9
257
Tumor
-1.1
635
Tumor
-1.1
435
Tumor
-1.2
951
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
