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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KRT18 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
562.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3812.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3086.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2879.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2861.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2058.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1828.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1815.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1708.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1707.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1682.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1584.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1509.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1459.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1457.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1449.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1426.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1421.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1277.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1234.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1219.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1199.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1183.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1156.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1149.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1144.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1128.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1093.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1066.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1036.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1035.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1022.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1012.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
992.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
968.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
908.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
901.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
885.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
875.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
863.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
862.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
860.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
858.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
853.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
852.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
848.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
832.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
831.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
827.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
826.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
826.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
823.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
813.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
804.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
804.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
801.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
795.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
792.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
783.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
779.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
770.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
768.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
766.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
753.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
747.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
741.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
734.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
724.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
718.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
712.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
707.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
694.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
693.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
693.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
691.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
690.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
690.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
686.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
684.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
684.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
683.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
680.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
678.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
677.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
676.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
674.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
667.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
666.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
662.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
658.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
654.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
652.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
650.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
641.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
640.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
639.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
638.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
634.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
632.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
632.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
632.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
629.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
627.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
627.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
626.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
624.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
623.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
616.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
614.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
611.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
610.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
609.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
605.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
603.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
601.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
597.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
596.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
596.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
586.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
577.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
576.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
575.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
575.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
573.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
572.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
571.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
567.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
564.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
562.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
561.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
560.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
559.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
559.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
559.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
558.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
557.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
551.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
550.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
546.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
546.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
542.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
541.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
540.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
539.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
537.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
537.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
536.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
533.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
533.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
532.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
526.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
524.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
519.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
518.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
514.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
512.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
511.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
509.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
508.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
504.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
499.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
496.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
496.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
494.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
492.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
491.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
488.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
485.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
484.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
481.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
480.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
477.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
476.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
474.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
472.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
471.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
471.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
471.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
470.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
467.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
463.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
463.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
459.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
459.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
458.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
458.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
456.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
452.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
451.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
446.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
445.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
441.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
440.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
440.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
438.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
436.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
435.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
432.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
432.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
431.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
430.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
427.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
426.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
425.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
423.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
423.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
423.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
416.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
415.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
415.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
415.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
414.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
412.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
412.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
410.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
410.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
406.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
400.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
399.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
398.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
397.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
395.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
394.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
393.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
392.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
392.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
391.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
391.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
391.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
390.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
389.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
387.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
383.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
379.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
379.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
378.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
378.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
375.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
374.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
373.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
371.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
371.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
371.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
370.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
367.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
367.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
366.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
366.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
365.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
363.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
361.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
361.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
357.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
354.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
354.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
352.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
350.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
349.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
349.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
348.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
347.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
346.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
345.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
344.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
344.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
339.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
339.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
337.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
335.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
331.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
328.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
326.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
326.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
324.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
323.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
319.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
318.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
317.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
316.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
315.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
313.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
312.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
311.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
310.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
310.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
308.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
307.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
306.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
305.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
305.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
303.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
302.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
299.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
294.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
294.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
293.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
292.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
292.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
291.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
290.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
290.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
286.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
285.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
284.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
280.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
279.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
275.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
272.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
268.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
265.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
262.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
262.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
261.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
258.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
257.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
257.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
255.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
254.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
251.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
251.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
248.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
245.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
245.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
244.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
243.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
242.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
241.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
240.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
239.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
239.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
237.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
236.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
236.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
229.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
229.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
225.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
225.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
223.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
219.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
214.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
212.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
210.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
203.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
202.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
200.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
199.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
199.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
190.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
183.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
179.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
176.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
172.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
169.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
168.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
167.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
166.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
160.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
153.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
152.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
139.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
132.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
127.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KRT18 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
482.9
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
5628.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4402.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2651.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
2161.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1977.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
1553.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
1527.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
1520.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
1422.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
1278.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
1083.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
1037.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
1017.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
999.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
997.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
983.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
957.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
916.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
868.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
866.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
846.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
826.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
817.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
816.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
810.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
795.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
760.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
740.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
733.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
726.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
695.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
692.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
687.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
686.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
681.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
675.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
674.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
670.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
651.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
645.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
641.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
636.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
613.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
610.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
596.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
592.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
581.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
576.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
575.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
572.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
571.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
564.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
562.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
560.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
553.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
549.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
548.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
547.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
542.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
541.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
533.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
532.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
529.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
527.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
525.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
502.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
497.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
494.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
492.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
486.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
482.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
479.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
478.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
474.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
474.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
467.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
463.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
441.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
438.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
435.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
423.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
418.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
417.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
416.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
416.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
415.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
412.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
410.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
407.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
404.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
401.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
395.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
391.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
390.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
389.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
389.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
389.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
386.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
384.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
383.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
382.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
381.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
381.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
380.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
379.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
376.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
376.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
375.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
372.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
370.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
368.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
362.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
362.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
357.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
356.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
354.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
353.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
352.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
350.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
350.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
339.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
337.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
337.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
331.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
331.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
331.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
329.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
328.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
327.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
326.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
324.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
324.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
324.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
322.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
321.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
321.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
320.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
319.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
319.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
315.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
314.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
313.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
311.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
310.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
310.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
310.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
308.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
307.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
307.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
305.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
298.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
296.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
289.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
280.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
278.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
271.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
271.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
270.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
268.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
267.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
266.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
265.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
265.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
261.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
260.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
258.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
257.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
254.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
253.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
252.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
251.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
250.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
250.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
249.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
246.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
242.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
241.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
238.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
234.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
231.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
229.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
226.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
226.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
224.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
221.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
219.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
217.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
217.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
216.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
214.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
212.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
211.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
210.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
209.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
208.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
203.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
203.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
203.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
201.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
199.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
198.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
198.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
196.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
196.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
189.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
189.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
185.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
184.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
177.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
177.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
173.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
171.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
169.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
168.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
163.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
156.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
156.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
152.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
145.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
145.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
145.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
144.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
142.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
140.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
138.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
136.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
114.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
113.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
51.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.0
1032
Normal
0.8
268
Normal
0.8
746
Normal
0.8
477
Tumor
0.7
955
Tumor
0.7
284
Normal
0.7
395
Tumor
0.7
1028
Normal
0.7
878
Normal
0.6
514
Normal
0.6
685
Tumor
0.6
328
Normal
0.6
513
Tumor
0.6
868
Normal
0.6
873
Tumor
0.6
715
Tumor
0.6
745
Tumor
0.6
498
Normal
0.6
535
Tumor
0.6
954
Normal
0.6
864
Normal
0.6
363
Tumor
0.5
956
Normal
0.5
722
Normal
0.5
866
Normal
0.5
916
Normal
0.5
616
Normal
0.5
852
Normal
0.5
428
Normal
0.5
424
Normal
0.5
478
Normal
0.5
944
Normal
0.5
984
Normal
0.5
721
Tumor
0.5
137
Tumor
0.5
738
Normal
0.5
741
Tumor
0.5
492
Normal
0.5
462
Normal
0.5
444
Normal
0.5
538
Normal
0.5
188
Normal
0.5
937
Tumor
0.4
627
Tumor
0.4
367
Tumor
0.4
938
Normal
0.4
534
Normal
0.4
212
Normal
0.4
558
Normal
0.4
824
Normal
0.4
388
Normal
0.4
524
Normal
0.4
452
Normal
0.4
926
Normal
0.4
494
Normal
0.4
527
Tumor
0.4
136
Normal
0.4
918
Normal
0.4
426
Normal
0.4
128
Normal
0.4
1042
Normal
0.4
716
Normal
0.4
314
Normal
0.4
474
Normal
0.4
327
Tumor
0.3
728
Normal
0.3
874
Normal
0.3
546
Normal
0.3
786
Normal
0.3
698
Normal
0.3
232
Normal
0.3
423
Tumor
0.3
528
Normal
0.3
686
Normal
0.3
362
Normal
0.3
148
Normal
0.3
464
Normal
0.3
982
Normal
0.3
714
Normal
0.3
162
Normal
0.3
976
Normal
0.3
364
Normal
0.3
465
Tumor
0.3
278
Normal
0.3
392
Normal
0.3
484
Normal
0.3
368
Normal
0.3
376
Normal
0.3
564
Normal
0.3
468
Normal
0.3
924
Normal
0.3
536
Normal
0.3
446
Normal
0.3
572
Normal
0.3
443
Tumor
0.3
958
Normal
0.3
1022
Normal
0.3
697
Tumor
0.3
387
Tumor
0.3
228
Normal
0.3
642
Normal
0.3
755
Tumor
0.3
414
Normal
0.3
356
Normal
0.2
724
Normal
0.2
172
Normal
0.2
416
Normal
0.2
696
Normal
0.2
261
Tumor
0.2
817
Tumor
0.2
737
Tumor
0.2
966
Normal
0.2
778
Normal
0.2
448
Normal
0.2
695
Tumor
0.2
1015
Tumor
0.2
756
Normal
0.2
394
Normal
0.2
618
Normal
0.2
863
Tumor
0.2
922
Normal
0.2
952
Normal
0.2
142
Normal
0.2
1014
Normal
0.2
262
Normal
0.2
977
Tumor
0.2
138
Normal
0.2
412
Normal
0.2
466
Normal
0.2
526
Normal
0.2
554
Normal
0.2
135
Tumor
0.2
472
Normal
0.2
914
Normal
0.1
975
Tumor
0.1
352
Normal
0.1
884
Normal
0.1
978
Normal
0.1
533
Tumor
0.1
818
Normal
0.1
1031
Tumor
0.1
451
Tumor
0.1
126
Normal
0.1
488
Normal
0.1
312
Normal
0.1
221
Tumor
0.1
617
Tumor
0.1
222
Normal
0.1
187
Tumor
0.1
1045
Tumor
0.1
214
Normal
0.1
384
Normal
0.1
1026
Normal
0.1
882
Normal
0.1
224
Normal
0.1
636
Normal
0.1
132
Normal
0.1
981
Tumor
0.1
964
Normal
0.1
628
Normal
0.1
983
Tumor
0.1
516
Normal
0.1
723
Tumor
0.1
816
Normal
0.1
365
Tumor
0.1
272
Normal
0.1
1016
Normal
0.1
422
Normal
0.1
553
Tumor
0.0
286
Normal
0.0
662
Normal
0.0
396
Normal
0.0
358
Normal
0.0
258
Normal
0.0
563
Tumor
0.0
1046
Normal
0.0
917
Tumor
0.0
455
Tumor
0.0
574
Normal
0.0
186
Normal
0.0
112
Tumor
0.0
641
Tumor
0.0
635
Tumor
0.0
344
Normal
0.0
482
Normal
0.0
415
Tumor
0.0
515
Tumor
0.0
425
Tumor
0.0
386
Normal
0.0
518
Normal
0.0
881
Tumor
0.0
1027
Tumor
0.0
1044
Normal
0.0
195
Tumor
0.0
461
Tumor
0.0
354
Normal
0.0
332
Normal
0.0
744
Normal
0.0
432
Normal
0.0
968
Normal
0.0
921
Tumor
0.0
648
Normal
-0.1
447
Tumor
-0.1
433
Tumor
-0.1
951
Tumor
-0.1
456
Normal
-0.1
615
Tumor
-0.1
124
Normal
-0.1
436
Normal
-0.1
393
Tumor
-0.1
1021
Tumor
-0.1
664
Normal
-0.1
366
Normal
-0.1
146
Normal
-0.1
471
Tumor
-0.1
111
Normal
-0.1
785
Tumor
-0.1
672
Normal
-0.2
573
Tumor
-0.2
943
Tumor
-0.2
923
Tumor
-0.2
858
Normal
-0.2
742
Normal
-0.2
171
Tumor
-0.2
145
Tumor
-0.2
434
Normal
-0.2
861
Tumor
-0.2
413
Tumor
-0.2
1025
Tumor
-0.2
114
Normal
-0.2
217
Tumor
-0.2
557
Tumor
-0.2
196
Normal
-0.2
867
Tumor
-0.2
497
Tumor
-0.3
391
Tumor
-0.3
777
Tumor
-0.3
421
Tumor
-0.3
912
Normal
-0.3
851
Tumor
-0.3
493
Tumor
-0.3
127
Tumor
-0.3
545
Tumor
-0.3
568
Normal
-0.3
298
Normal
-0.3
815
Tumor
-0.3
666
Normal
-0.3
814
Normal
-0.3
862
Normal
-0.3
341
Tumor
-0.3
823
Tumor
-0.3
131
Tumor
-0.3
361
Tumor
-0.3
185
Tumor
-0.4
857
Tumor
-0.4
231
Tumor
-0.4
147
Tumor
-0.4
911
Tumor
-0.4
491
Tumor
-0.4
713
Tumor
-0.4
957
Tumor
-0.4
355
Tumor
-0.4
218
Normal
-0.4
213
Tumor
-0.4
915
Tumor
-0.4
192
Normal
-0.4
481
Tumor
-0.4
113
Tumor
-0.5
123
Tumor
-0.5
342
Normal
-0.5
353
Tumor
-0.5
467
Tumor
-0.5
191
Tumor
-0.5
571
Tumor
-0.5
297
Tumor
-0.6
665
Tumor
-0.6
517
Tumor
-0.6
375
Tumor
-0.6
883
Tumor
-0.6
671
Tumor
-0.6
913
Tumor
-0.6
813
Tumor
-0.6
271
Tumor
-0.6
567
Tumor
-0.7
331
Tumor
-0.7
385
Tumor
-0.7
431
Tumor
-0.7
483
Tumor
-0.7
967
Tumor
-0.7
383
Tumor
-0.7
285
Tumor
-0.8
523
Tumor
-0.8
865
Tumor
-0.8
877
Tumor
-0.8
1043
Tumor
-0.8
311
Tumor
-0.9
357
Tumor
-0.9
351
Tumor
-1.0
953
Tumor
-1.0
727
Tumor
-1.0
537
Tumor
-1.0
257
Tumor
-1.0
1013
Tumor
-1.0
965
Tumor
-1.0
277
Tumor
-1.0
647
Tumor
-1.0
223
Tumor
-1.0
463
Tumor
-1.0
435
Tumor
-1.0
227
Tumor
-1.1
963
Tumor
-1.1
283
Tumor
-1.1
1041
Tumor
-1.1
161
Tumor
-1.1
411
Tumor
-1.1
141
Tumor
-1.1
525
Tumor
-1.1
267
Tumor
-1.1
125
Tumor
-1.2
427
Tumor
-1.2
445
Tumor
-1.2
743
Tumor
-1.3
661
Tumor
-1.3
487
Tumor
-1.3
343
Tumor
-1.3
473
Tumor
-1.4
313
Tumor
-1.5
211
Tumor
-1.6
663
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.