We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCIRG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
322.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
91.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
84.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
71.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
61.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
60.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
52.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
46.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
45.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
38.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCIRG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.7
Number of samples
231
Samples
Sample
Description
TPM
DO45191
0 years, female, NA, stage:2, alive, 1200 days
280.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
270.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
224.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
191.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
156.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
148.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
136.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
124.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
120.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
115.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
112.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
106.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
101.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
98.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
95.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
86.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
85.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
80.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
78.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
75.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
73.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
71.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
71.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
70.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
65.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
64.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
63.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
63.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
63.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
62.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
61.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
61.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
60.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
60.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
59.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
59.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
59.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
58.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
56.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
55.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
53.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
53.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
52.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
52.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
52.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
51.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
46.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
46.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
44.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
38.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
36.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.1
697
Tumor
0.9
434
Normal
0.9
125
Tumor
0.9
491
Tumor
0.9
573
Tumor
0.8
713
Tumor
0.8
343
Tumor
0.8
224
Normal
0.7
217
Tumor
0.7
395
Tumor
0.7
262
Normal
0.6
313
Tumor
0.6
311
Tumor
0.6
195
Tumor
0.6
368
Normal
0.6
917
Tumor
0.6
213
Tumor
0.6
724
Normal
0.6
525
Tumor
0.6
211
Tumor
0.5
124
Normal
0.5
283
Tumor
0.5
721
Tumor
0.5
536
Normal
0.5
524
Normal
0.5
432
Normal
0.5
814
Normal
0.5
367
Tumor
0.5
272
Normal
0.5
528
Normal
0.5
286
Normal
0.5
914
Normal
0.5
332
Normal
0.5
218
Normal
0.4
672
Normal
0.4
396
Normal
0.4
498
Normal
0.4
952
Normal
0.4
813
Tumor
0.4
473
Tumor
0.4
231
Tumor
0.4
966
Normal
0.4
444
Normal
0.4
686
Normal
0.4
192
Normal
0.4
112
Tumor
0.4
341
Tumor
0.4
978
Normal
0.4
394
Normal
0.4
146
Normal
0.4
662
Normal
0.4
268
Normal
0.4
428
Normal
0.4
666
Normal
0.4
212
Normal
0.4
385
Tumor
0.4
362
Normal
0.4
943
Tumor
0.3
138
Normal
0.3
492
Normal
0.3
366
Normal
0.3
258
Normal
0.3
126
Normal
0.3
446
Normal
0.3
984
Normal
0.3
232
Normal
0.3
284
Normal
0.3
1044
Normal
0.3
671
Tumor
0.3
328
Normal
0.3
386
Normal
0.3
145
Tumor
0.3
188
Normal
0.3
384
Normal
0.3
111
Normal
0.3
478
Normal
0.3
136
Normal
0.3
514
Normal
0.3
344
Normal
0.3
467
Tumor
0.3
527
Tumor
0.3
365
Tumor
0.3
851
Tumor
0.3
388
Normal
0.3
376
Normal
0.3
391
Tumor
0.3
314
Normal
0.3
312
Normal
0.3
535
Tumor
0.3
356
Normal
0.3
468
Normal
0.3
716
Normal
0.3
464
Normal
0.3
383
Tumor
0.3
628
Normal
0.3
191
Tumor
0.3
196
Normal
0.3
1046
Normal
0.2
558
Normal
0.2
515
Tumor
0.2
222
Normal
0.2
436
Normal
0.2
456
Normal
0.2
516
Normal
0.2
574
Normal
0.2
214
Normal
0.2
664
Normal
0.2
267
Tumor
0.2
414
Normal
0.2
142
Normal
0.2
392
Normal
0.2
114
Normal
0.2
1045
Tumor
0.2
271
Tumor
0.2
526
Normal
0.2
354
Normal
0.2
518
Normal
0.2
727
Tumor
0.2
135
Tumor
0.2
132
Normal
0.2
375
Tumor
0.2
648
Normal
0.2
415
Tumor
0.2
627
Tumor
0.2
447
Tumor
0.2
778
Normal
0.2
815
Tumor
0.2
618
Normal
0.2
816
Normal
0.2
186
Normal
0.2
141
Tumor
0.2
494
Normal
0.2
185
Tumor
0.2
426
Normal
0.2
636
Normal
0.2
331
Tumor
0.2
786
Normal
0.2
361
Tumor
0.2
278
Normal
0.2
538
Normal
0.2
954
Normal
0.2
913
Tumor
0.2
148
Normal
0.2
466
Normal
0.2
172
Normal
0.2
416
Normal
0.2
482
Normal
0.1
722
Normal
0.1
352
Normal
0.1
424
Normal
0.1
358
Normal
0.1
926
Normal
0.1
364
Normal
0.1
1028
Normal
0.1
918
Normal
0.1
412
Normal
0.1
554
Normal
0.1
916
Normal
0.1
723
Tumor
0.1
228
Normal
0.1
162
Normal
0.1
171
Tumor
0.1
564
Normal
0.1
568
Normal
0.1
455
Tumor
0.1
616
Normal
0.1
563
Tumor
0.1
421
Tumor
0.1
696
Normal
0.1
642
Normal
0.1
1014
Normal
0.1
647
Tumor
0.1
534
Normal
0.1
912
Normal
0.1
1016
Normal
0.1
877
Tumor
0.1
884
Normal
0.1
298
Normal
0.1
571
Tumor
0.1
698
Normal
0.1
513
Tumor
0.1
413
Tumor
0.1
257
Tumor
0.1
422
Normal
0.1
128
Normal
0.1
462
Normal
0.1
956
Normal
0.1
448
Normal
0.1
1042
Normal
0.1
427
Tumor
0.1
824
Normal
0.1
728
Normal
0.0
472
Normal
0.0
756
Normal
0.0
925
Tumor
0.0
663
Tumor
0.0
127
Tumor
0.0
873
Tumor
0.0
742
Normal
0.0
488
Normal
0.0
968
Normal
0.0
1015
Tumor
0.0
617
Tumor
0.0
537
Tumor
0.0
982
Normal
0.0
187
Tumor
0.0
297
Tumor
0.0
874
Normal
0.0
955
Tumor
0.0
858
Normal
0.0
983
Tumor
0.0
451
Tumor
0.0
497
Tumor
0.0
714
Normal
0.0
1026
Normal
0.0
823
Tumor
0.0
922
Normal
0.0
738
Normal
0.0
572
Normal
0.0
861
Tumor
0.0
342
Normal
0.0
1013
Tumor
0.0
938
Normal
0.0
944
Normal
0.0
452
Normal
0.0
868
Normal
0.0
953
Tumor
0.0
523
Tumor
0.0
967
Tumor
0.0
461
Tumor
-0.1
665
Tumor
-0.1
862
Normal
-0.1
878
Normal
-0.1
557
Tumor
-0.1
882
Normal
-0.1
277
Tumor
-0.1
924
Normal
-0.1
881
Tumor
-0.1
433
Tumor
-0.1
161
Tumor
-0.1
357
Tumor
-0.1
481
Tumor
-0.1
964
Normal
-0.1
393
Tumor
-0.1
976
Normal
-0.1
387
Tumor
-0.1
817
Tumor
-0.1
852
Normal
-0.1
615
Tumor
-0.1
546
Normal
-0.1
883
Tumor
-0.1
864
Normal
-0.1
963
Tumor
-0.1
261
Tumor
-0.1
923
Tumor
-0.1
223
Tumor
-0.1
363
Tumor
-0.1
818
Normal
-0.1
746
Normal
-0.1
474
Normal
-0.1
545
Tumor
-0.1
113
Tumor
-0.1
975
Tumor
-0.1
866
Normal
-0.1
493
Tumor
-0.2
857
Tumor
-0.2
867
Tumor
-0.2
484
Normal
-0.2
463
Tumor
-0.2
715
Tumor
-0.2
355
Tumor
-0.2
744
Normal
-0.2
1043
Tumor
-0.2
1032
Normal
-0.2
553
Tumor
-0.2
958
Normal
-0.2
1022
Normal
-0.2
915
Tumor
-0.2
567
Tumor
-0.2
641
Tumor
-0.2
327
Tumor
-0.3
227
Tumor
-0.3
137
Tumor
-0.3
755
Tumor
-0.3
937
Tumor
-0.3
685
Tumor
-0.3
981
Tumor
-0.3
147
Tumor
-0.3
921
Tumor
-0.3
471
Tumor
-0.3
477
Tumor
-0.3
351
Tumor
-0.3
411
Tumor
-0.4
951
Tumor
-0.4
221
Tumor
-0.4
443
Tumor
-0.4
1027
Tumor
-0.4
785
Tumor
-0.4
745
Tumor
-0.4
353
Tumor
-0.4
423
Tumor
-0.5
741
Tumor
-0.5
695
Tumor
-0.5
517
Tumor
-0.5
123
Tumor
-0.5
1031
Tumor
-0.5
487
Tumor
-0.5
865
Tumor
-0.5
431
Tumor
-0.5
533
Tumor
-0.5
965
Tumor
-0.5
483
Tumor
-0.6
1025
Tumor
-0.6
1041
Tumor
-0.6
635
Tumor
-0.6
285
Tumor
-0.6
957
Tumor
-0.6
1021
Tumor
-0.6
863
Tumor
-0.6
777
Tumor
-0.7
977
Tumor
-0.7
465
Tumor
-0.7
435
Tumor
-0.7
445
Tumor
-0.8
911
Tumor
-0.8
743
Tumor
-0.8
131
Tumor
-0.9
737
Tumor
-0.9
425
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.