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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD81 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
402.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1748.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1350.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1101.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1092.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1050.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1008.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
997.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
991.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
927.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
925.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
917.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
902.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
886.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
869.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
839.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
838.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
832.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
828.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
820.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
819.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
808.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
806.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
799.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
799.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
781.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
776.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
774.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
764.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
750.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
750.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
745.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
744.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
744.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
737.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
730.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
724.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
715.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
713.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
709.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
706.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
706.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
704.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
701.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
700.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
700.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
696.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
694.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
664.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
661.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
660.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
656.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
652.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
650.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
649.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
646.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
645.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
637.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
633.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
631.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
629.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
629.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
629.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
626.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
625.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
620.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
613.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
609.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
607.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
605.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
591.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
591.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
588.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
583.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
582.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
576.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
573.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
570.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
567.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
556.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
555.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
555.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
551.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
547.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
547.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
547.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
546.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
545.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
542.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
538.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
537.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
537.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
535.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
534.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
534.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
532.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
529.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
529.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
529.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
528.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
524.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
523.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
519.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
511.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
503.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
498.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
494.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
493.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
492.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
491.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
486.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
484.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
483.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
483.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
476.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
473.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
471.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
467.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
464.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
463.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
462.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
460.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
460.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
458.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
457.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
456.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
456.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
456.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
454.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
454.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
453.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
452.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
452.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
451.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
447.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
447.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
446.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
443.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
442.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
442.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
438.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
437.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
427.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
426.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
424.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
420.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
417.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
416.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
415.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
410.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
409.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
408.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
408.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
406.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
403.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
402.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
400.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
396.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
395.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
394.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
392.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
388.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
384.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
383.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
383.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
379.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
377.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
377.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
376.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
376.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
373.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
373.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
372.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
372.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
371.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
369.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
368.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
367.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
365.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
364.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
362.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
361.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
354.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
354.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
353.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
352.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
351.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
351.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
349.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
348.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
348.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
347.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
343.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
341.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
339.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
337.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
337.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
335.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
333.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
333.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
331.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
330.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
330.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
329.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
328.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
328.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
327.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
324.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
324.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
323.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
322.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
322.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
321.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
316.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
315.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
315.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
313.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
313.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
311.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
310.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
310.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
309.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
308.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
302.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
299.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
295.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
295.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
295.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
294.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
293.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
291.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
291.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
287.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
287.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
286.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
285.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
283.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
282.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
282.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
281.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
280.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
280.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
278.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
276.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
276.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
273.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
272.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
271.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
269.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
268.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
265.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
264.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
263.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
260.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
260.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
258.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
258.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
255.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
254.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
253.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
248.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
248.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
247.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
247.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
243.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
238.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
238.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
238.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
236.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
234.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
233.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
230.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
230.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
229.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
229.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
228.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
227.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
225.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
224.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
223.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
222.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
222.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
218.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
214.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
213.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
212.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
212.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
211.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
208.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
207.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
204.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
201.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
201.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
197.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
196.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
195.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
191.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
189.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
188.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
188.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
187.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
185.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
184.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
184.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
183.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
182.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
182.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
181.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
177.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
174.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
171.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
169.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
166.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
164.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
163.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
157.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
153.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
150.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
150.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
148.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
148.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
147.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
145.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
145.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
135.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
131.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
131.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
130.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
127.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
126.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
123.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
116.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
114.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
111.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
110.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
108.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
106.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
106.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
102.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
98.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
96.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
94.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
91.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
90.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
89.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
88.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
80.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
76.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
74.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
69.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
65.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
62.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
44.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD81 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
247.5
Number of samples
231
Samples
Sample
Description
TPM
DO45097
0 years, male, NA, stage:3, alive, 1620 days
851.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
675.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
662.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
646.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
620.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
597.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
578.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
571.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
566.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
544.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
540.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
537.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
521.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
511.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
505.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
503.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
496.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
491.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
489.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
463.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
462.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
459.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
456.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
455.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
450.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
427.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
425.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
424.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
420.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
414.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
404.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
402.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
401.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
401.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
398.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
394.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
393.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
389.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
387.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
386.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
377.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
376.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
370.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
365.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
364.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
361.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
355.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
349.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
348.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
343.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
341.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
337.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
333.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
331.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
324.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
322.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
321.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
321.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
316.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
316.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
314.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
314.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
313.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
312.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
312.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
312.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
311.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
310.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
308.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
307.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
305.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
304.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
302.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
301.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
294.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
294.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
293.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
292.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
290.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
288.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
286.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
281.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
278.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
278.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
273.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
272.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
271.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
269.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
269.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
267.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
263.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
260.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
260.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
260.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
260.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
259.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
257.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
255.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
254.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
250.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
250.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
250.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
249.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
248.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
247.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
245.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
244.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
243.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
243.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
243.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
241.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
241.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
239.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
238.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
235.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
233.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
230.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
228.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
228.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
227.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
225.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
225.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
223.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
222.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
221.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
221.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
220.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
219.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
216.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
213.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
209.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
208.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
206.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
205.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
201.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
198.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
191.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
190.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
190.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
189.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
189.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
188.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
185.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
185.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
183.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
183.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
181.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
181.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
181.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
181.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
180.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
180.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
179.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
178.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
178.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
177.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
177.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
171.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
170.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
164.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
158.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
158.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
152.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
150.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
149.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
148.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
148.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
148.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
147.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
146.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
146.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
146.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
144.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
140.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
139.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
138.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
135.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
134.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
132.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
128.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
120.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
118.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
114.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
114.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
112.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
112.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
111.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
111.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
111.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
110.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
110.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
108.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
104.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
103.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
102.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
101.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
99.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
96.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
95.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
95.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
89.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
84.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
84.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
82.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
81.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
79.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
78.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
73.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
71.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
71.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
69.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
62.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.0
536
Normal
0.8
744
Normal
0.8
538
Normal
0.6
498
Normal
0.6
344
Normal
0.6
124
Normal
0.6
952
Normal
0.6
738
Normal
0.6
878
Normal
0.6
142
Normal
0.6
874
Normal
0.5
816
Normal
0.5
554
Normal
0.5
746
Normal
0.5
492
Normal
0.5
1028
Normal
0.5
146
Normal
0.5
434
Normal
0.5
212
Normal
0.5
742
Normal
0.5
461
Tumor
0.5
224
Normal
0.5
136
Normal
0.5
444
Normal
0.5
422
Normal
0.4
428
Normal
0.4
272
Normal
0.4
412
Normal
0.4
188
Normal
0.4
426
Normal
0.4
778
Normal
0.4
494
Normal
0.4
728
Normal
0.4
111
Normal
0.4
218
Normal
0.4
228
Normal
0.4
138
Normal
0.4
474
Normal
0.4
432
Normal
0.3
268
Normal
0.3
424
Normal
0.3
386
Normal
0.3
462
Normal
0.3
976
Normal
0.3
436
Normal
0.3
421
Tumor
0.3
452
Normal
0.3
414
Normal
0.3
128
Normal
0.3
185
Tumor
0.3
956
Normal
0.3
214
Normal
0.3
258
Normal
0.3
358
Normal
0.3
924
Normal
0.3
312
Normal
0.3
464
Normal
0.3
455
Tumor
0.3
298
Normal
0.3
342
Normal
0.3
966
Normal
0.3
132
Normal
0.3
448
Normal
0.3
558
Normal
0.3
284
Normal
0.2
354
Normal
0.2
114
Normal
0.2
262
Normal
0.2
516
Normal
0.2
278
Normal
0.2
914
Normal
0.2
698
Normal
0.2
478
Normal
0.2
686
Normal
0.2
162
Normal
0.2
126
Normal
0.2
352
Normal
0.2
938
Normal
0.2
466
Normal
0.2
456
Normal
0.2
186
Normal
0.2
696
Normal
0.2
286
Normal
0.2
232
Normal
0.2
446
Normal
0.2
823
Tumor
0.2
862
Normal
0.2
813
Tumor
0.2
222
Normal
0.1
968
Normal
0.1
958
Normal
0.1
396
Normal
0.1
392
Normal
0.1
572
Normal
0.1
365
Tumor
0.1
468
Normal
0.1
864
Normal
0.1
1015
Tumor
0.1
332
Normal
0.1
852
Normal
0.1
883
Tumor
0.1
1026
Normal
0.1
172
Normal
0.1
911
Tumor
0.1
484
Normal
0.1
981
Tumor
0.1
785
Tumor
0.1
416
Normal
0.1
868
Normal
0.1
982
Normal
0.1
362
Normal
0.1
568
Normal
0.0
261
Tumor
0.0
866
Normal
0.0
328
Normal
0.0
394
Normal
0.0
376
Normal
0.0
368
Normal
0.0
366
Normal
0.0
723
Tumor
0.0
666
Normal
0.0
196
Normal
0.0
148
Normal
0.0
472
Normal
0.0
488
Normal
0.0
817
Tumor
0.0
755
Tumor
0.0
648
Normal
0.0
356
Normal
0.0
664
Normal
0.0
574
Normal
0.0
1016
Normal
0.0
662
Normal
0.0
515
Tumor
0.0
824
Normal
0.0
1014
Normal
-0.1
546
Normal
-0.1
943
Tumor
-0.1
534
Normal
-0.1
618
Normal
-0.1
716
Normal
-0.1
524
Normal
-0.1
916
Normal
-0.1
195
Tumor
-0.1
964
Normal
-0.1
777
Tumor
-0.1
518
Normal
-0.1
642
Normal
-0.1
786
Normal
-0.1
223
Tumor
-0.1
314
Normal
-0.1
528
Normal
-0.1
858
Normal
-0.1
388
Normal
-0.1
1022
Normal
-0.1
984
Normal
-0.1
526
Normal
-0.1
482
Normal
-0.2
814
Normal
-0.2
311
Tumor
-0.2
363
Tumor
-0.2
636
Normal
-0.2
978
Normal
-0.2
384
Normal
-0.2
881
Tumor
-0.2
714
Normal
-0.2
145
Tumor
-0.2
628
Normal
-0.2
563
Tumor
-0.2
141
Tumor
-0.2
1044
Normal
-0.2
112
Tumor
-0.2
297
Tumor
-0.2
697
Tumor
-0.3
954
Normal
-0.3
955
Tumor
-0.3
415
Tumor
-0.3
423
Tumor
-0.3
944
Normal
-0.3
616
Normal
-0.3
271
Tumor
-0.3
861
Tumor
-0.3
882
Normal
-0.3
327
Tumor
-0.3
137
Tumor
-0.3
364
Normal
-0.3
481
Tumor
-0.3
217
Tumor
-0.3
977
Tumor
-0.3
564
Normal
-0.3
918
Normal
-0.3
922
Normal
-0.3
471
Tumor
-0.4
672
Normal
-0.4
1046
Normal
-0.4
545
Tumor
-0.4
818
Normal
-0.4
491
Tumor
-0.4
514
Normal
-0.4
867
Tumor
-0.4
513
Tumor
-0.4
1043
Tumor
-0.4
447
Tumor
-0.4
857
Tumor
-0.4
211
Tumor
-0.4
483
Tumor
-0.4
1032
Normal
-0.4
477
Tumor
-0.4
722
Normal
-0.4
433
Tumor
-0.4
975
Tumor
-0.5
267
Tumor
-0.5
353
Tumor
-0.5
873
Tumor
-0.5
525
Tumor
-0.5
917
Tumor
-0.5
277
Tumor
-0.5
171
Tumor
-0.5
127
Tumor
-0.5
1045
Tumor
-0.5
737
Tumor
-0.5
756
Normal
-0.5
355
Tumor
-0.5
863
Tumor
-0.6
385
Tumor
-0.6
343
Tumor
-0.6
884
Normal
-0.6
963
Tumor
-0.6
721
Tumor
-0.6
187
Tumor
-0.6
467
Tumor
-0.6
915
Tumor
-0.6
135
Tumor
-0.6
213
Tumor
-0.6
451
Tumor
-0.6
553
Tumor
-0.6
627
Tumor
-0.7
493
Tumor
-0.7
445
Tumor
-0.7
161
Tumor
-0.7
1041
Tumor
-0.7
125
Tumor
-0.7
473
Tumor
-0.7
715
Tumor
-0.7
923
Tumor
-0.7
925
Tumor
-0.7
465
Tumor
-0.7
535
Tumor
-0.7
383
Tumor
-0.7
191
Tumor
-0.8
913
Tumor
-0.8
435
Tumor
-0.8
443
Tumor
-0.8
615
Tumor
-0.8
331
Tumor
-0.8
427
Tumor
-0.8
865
Tumor
-0.8
713
Tumor
-0.8
1025
Tumor
-0.8
741
Tumor
-0.8
926
Normal
-0.8
912
Normal
-0.8
361
Tumor
-0.8
951
Tumor
-0.8
257
Tumor
-0.8
1042
Normal
-0.9
131
Tumor
-0.9
695
Tumor
-0.9
395
Tumor
-0.9
375
Tumor
-0.9
425
Tumor
-0.9
921
Tumor
-1.0
487
Tumor
-1.0
283
Tumor
-1.0
1021
Tumor
-1.0
1013
Tumor
-1.0
953
Tumor
-1.0
431
Tumor
-1.0
567
Tumor
-1.1
413
Tumor
-1.1
113
Tumor
-1.1
724
Normal
-1.1
557
Tumor
-1.1
1031
Tumor
-1.1
231
Tumor
-1.1
123
Tumor
-1.1
965
Tumor
-1.2
357
Tumor
-1.2
685
Tumor
-1.2
663
Tumor
-1.2
463
Tumor
-1.2
517
Tumor
-1.2
671
Tumor
-1.2
227
Tumor
-1.3
1027
Tumor
-1.3
393
Tumor
-1.3
497
Tumor
-1.3
727
Tumor
-1.3
341
Tumor
-1.3
367
Tumor
-1.3
641
Tumor
-1.3
647
Tumor
-1.3
411
Tumor
-1.3
877
Tumor
-1.4
661
Tumor
-1.4
937
Tumor
-1.4
743
Tumor
-1.4
533
Tumor
-1.4
221
Tumor
-1.4
983
Tumor
-1.4
147
Tumor
-1.5
745
Tumor
-1.5
351
Tumor
-1.5
957
Tumor
-1.6
313
Tumor
-1.6
391
Tumor
-1.6
527
Tumor
-1.6
617
Tumor
-1.6
387
Tumor
-1.6
573
Tumor
-1.6
851
Tumor
-1.7
815
Tumor
-1.7
665
Tumor
-1.7
571
Tumor
-1.9
523
Tumor
-2.0
285
Tumor
-2.1
967
Tumor
-2.1
537
Tumor
-2.2
635
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.