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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST3GAL4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
86.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST3GAL4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
155.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
140.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
1.5
536
Normal
1.3
937
Tumor
0.9
697
Tumor
0.9
1027
Tumor
0.9
917
Tumor
0.8
567
Tumor
0.7
113
Tumor
0.7
447
Tumor
0.6
881
Tumor
0.6
557
Tumor
0.6
943
Tumor
0.6
925
Tumor
0.6
851
Tumor
0.6
953
Tumor
0.5
916
Normal
0.5
563
Tumor
0.5
1044
Normal
0.5
921
Tumor
0.5
865
Tumor
0.5
535
Tumor
0.4
913
Tumor
0.3
327
Tumor
0.3
1041
Tumor
0.3
448
Normal
0.3
1046
Normal
0.3
861
Tumor
0.3
355
Tumor
0.3
923
Tumor
0.2
1043
Tumor
0.2
858
Normal
0.2
864
Normal
0.2
1015
Tumor
0.2
852
Normal
0.2
1045
Tumor
0.2
124
Normal
0.1
564
Normal
0.1
954
Normal
0.1
817
Tumor
0.1
857
Tumor
0.1
574
Normal
0.1
786
Normal
0.1
756
Normal
0.1
125
Tumor
0.1
818
Normal
0.1
862
Normal
0.1
778
Normal
0.1
558
Normal
0.1
874
Normal
0.1
114
Normal
0.1
944
Normal
0.0
824
Normal
0.0
537
Tumor
0.0
938
Normal
0.0
746
Normal
0.0
924
Normal
0.0
1028
Normal
0.0
823
Tumor
0.0
816
Normal
0.0
745
Tumor
0.0
412
Normal
-0.1
111
Normal
-0.1
914
Normal
-0.1
572
Normal
-0.1
866
Normal
-0.1
364
Normal
-0.1
867
Tumor
-0.1
568
Normal
-0.1
883
Tumor
-0.1
878
Normal
-0.1
571
Tumor
-0.1
698
Normal
-0.1
1014
Normal
-0.1
863
Tumor
-0.1
978
Normal
-0.1
814
Normal
-0.1
128
Normal
-0.1
952
Normal
-0.1
918
Normal
-0.1
922
Normal
-0.2
951
Tumor
-0.2
356
Normal
-0.2
868
Normal
-0.2
873
Tumor
-0.2
984
Normal
-0.2
1032
Normal
-0.2
926
Normal
-0.2
976
Normal
-0.2
975
Tumor
-0.2
126
Normal
-0.2
416
Normal
-0.2
1022
Normal
-0.3
957
Tumor
-0.3
968
Normal
-0.3
415
Tumor
-0.3
1016
Normal
-0.3
755
Tumor
-0.3
877
Tumor
-0.3
528
Normal
-0.3
884
Normal
-0.3
915
Tumor
-0.3
882
Normal
-0.3
112
Tumor
-0.3
813
Tumor
-0.3
1021
Tumor
-0.3
958
Normal
-0.3
956
Normal
-0.3
1042
Normal
-0.4
1025
Tumor
-0.4
964
Normal
-0.4
982
Normal
-0.4
1026
Normal
-0.4
983
Tumor
-0.4
538
Normal
-0.4
328
Normal
-0.4
533
Tumor
-0.4
127
Tumor
-0.4
981
Tumor
-0.5
411
Tumor
-0.5
534
Normal
-0.5
363
Tumor
-0.5
546
Normal
-0.5
963
Tumor
-0.5
966
Normal
-0.6
545
Tumor
-0.6
912
Normal
-0.6
1031
Tumor
-0.6
815
Tumor
-0.6
955
Tumor
-0.6
1013
Tumor
-0.6
911
Tumor
-0.8
123
Tumor
-0.8
554
Normal
-0.8
977
Tumor
-0.8
777
Tumor
-0.8
967
Tumor
-0.9
527
Tumor
-1.0
965
Tumor
-1.0
553
Tumor
-1.3
785
Tumor
-1.3
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
