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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA8 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
579.0
Number of samples
349
Samples
Sample
Description
TPM
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
1594.0
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
1448.9
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
1404.7
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
1369.4
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
1318.1
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
1247.5
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
1209.8
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
1205.5
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
1190.9
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
1168.9
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
1126.3
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
1088.2
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
1067.9
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
1060.7
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
1053.9
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
1037.7
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
1032.0
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
1015.0
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
1011.4
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
996.6
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
991.3
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
982.5
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
980.8
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
974.3
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
963.9
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
963.7
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
960.9
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
958.6
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
948.2
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
945.1
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
908.8
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
877.0
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
876.5
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
876.4
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
876.4
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
875.7
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
875.1
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
873.4
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
872.3
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
867.1
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
862.2
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
858.6
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
857.1
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
857.0
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
855.3
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
855.1
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
853.7
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
850.4
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
842.3
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
833.3
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
831.1
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
829.9
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
829.4
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
827.7
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
817.5
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
802.4
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
799.7
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
798.7
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
798.6
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
792.4
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
790.8
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
789.5
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
789.5
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
787.9
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
787.8
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
782.7
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
782.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
781.9
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
780.5
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
778.6
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
773.3
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
772.6
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
771.2
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
770.8
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
769.7
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
769.5
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
768.9
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
768.0
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
766.6
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
765.3
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
752.6
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
750.8
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
750.8
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
748.8
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
747.9
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
747.3
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
737.5
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
724.5
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
721.0
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
720.9
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
718.8
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
717.3
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
714.3
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
714.0
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
713.2
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
708.1
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
702.3
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
699.8
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
697.8
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
689.3
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
680.3
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
677.8
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
674.9
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
674.8
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
669.5
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
669.2
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
653.9
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
652.3
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
648.0
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
646.4
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
645.5
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
643.4
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
641.5
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
639.7
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
637.5
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
636.1
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
631.9
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
627.4
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
625.2
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
625.1
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
624.9
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
622.4
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
617.5
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
615.9
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
612.8
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
611.5
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
609.5
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
608.8
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
608.3
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
607.1
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
606.0
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
605.9
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
604.9
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
600.5
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
598.5
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
592.7
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
590.7
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
589.9
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
589.0
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
587.9
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
587.7
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
587.6
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
586.7
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
579.3
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
578.8
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
573.2
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
572.6
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
572.2
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
571.8
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
571.7
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
568.7
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
568.0
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
567.2
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
566.6
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
565.3
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
562.5
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
561.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
560.7
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
557.6
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
554.9
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
554.6
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
551.0
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
549.4
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
548.7
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
548.4
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
547.6
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
547.1
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
545.7
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
545.6
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
544.6
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
543.7
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
543.2
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
539.3
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
539.0
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
538.7
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
537.8
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
531.9
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
531.9
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
531.0
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
530.6
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
530.1
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
529.7
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
527.6
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
525.8
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
525.3
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
524.7
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
523.7
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
520.5
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
519.7
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
518.3
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
517.0
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
516.2
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
512.9
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
510.1
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
508.8
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
506.7
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
505.4
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
505.3
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
505.0
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
504.7
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
504.6
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
504.6
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
503.7
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
502.2
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
501.6
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
500.2
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
498.3
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
497.5
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
496.6
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
496.1
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
495.3
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
492.7
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
490.3
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
490.3
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
487.8
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
487.6
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
486.8
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
486.2
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
481.1
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
480.2
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
479.8
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
479.6
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
477.8
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
476.4
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
476.1
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
475.0
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
473.3
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
471.8
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
470.0
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
467.6
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
466.4
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
463.5
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
463.3
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
457.0
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
456.4
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
451.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
449.7
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
448.6
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
447.0
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
446.7
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
444.0
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
442.5
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
442.3
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
440.5
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
440.2
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
435.5
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
434.4
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
431.9
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
430.4
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
428.6
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
428.2
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
428.0
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
423.1
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
421.0
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
418.2
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
413.3
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
412.1
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
408.0
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
405.2
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
401.9
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
400.8
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
400.2
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
398.6
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
398.3
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
398.3
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
395.0
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
393.2
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
389.8
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
385.7
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
377.8
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
377.7
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
377.1
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
376.2
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
375.9
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
375.9
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
375.5
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
374.9
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
372.1
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
370.8
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
368.9
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
366.6
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
364.5
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
364.3
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
362.6
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
361.8
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
361.5
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
360.5
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
360.0
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
358.8
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
356.7
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
356.3
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
355.7
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
354.3
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
352.6
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
351.1
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
344.6
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
341.8
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
341.5
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
341.3
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
340.6
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
335.7
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
335.5
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
334.7
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
334.3
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
330.8
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
327.8
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
324.8
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
322.8
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
320.1
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
319.0
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
317.5
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
315.8
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
315.6
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
314.8
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
314.2
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
312.9
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
311.9
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
308.3
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
308.2
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
304.3
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
298.8
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
297.9
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
297.7
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
288.0
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
282.9
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
282.5
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
281.8
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
277.8
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
274.1
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
272.0
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
270.5
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
269.5
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
269.5
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
261.7
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
251.7
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
241.7
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
229.7
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
226.8
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
204.2
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
203.9
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
191.9
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
187.1
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
185.3
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
185.1
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
177.8
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
170.7
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
146.5
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
104.9
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA8 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
714.3
Number of samples
81
Samples
Sample
Description
TPM
DO46551
0 years, female, NA, stage:III, dead, 1055 days
1285.5
DO46380
0 years, female, NA, stage:III, dead, 1423 days
1262.0
DO46388
0 years, female, NA, stage:III, dead, 413 days
1256.6
DO46382
0 years, female, NA, stage:IV, dead, 311 days
1211.0
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
1167.1
DO46443
0 years, female, NA, stage:III, dead, 2464 days
1159.1
DO46453
0 years, female, NA, stage:III, dead, 3294 days
1137.3
DO46586
0 years, female, NA, stage:III, dead, 1019 days
1119.9
DO46327
0 years, female, NA, stage:III, dead, 184 days
1097.1
DO46404
0 years, female, NA, stage:III, dead, 690 days
1095.3
DO46348
0 years, female, NA, stage:IV, dead, 287 days
1080.7
DO46370
0 years, female, NA, stage:III, dead, 1727 days
1077.9
DO46493
0 years, female, NA, stage:IV, alive, 839 days
1076.9
DO46325
0 years, female, NA, stage:III, dead, 477 days
1045.6
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
1038.4
DO46334
0 years, female, NA, stage:III, dead, 496 days
1029.1
DO46368
0 years, female, NA, stage:III, dead, 2879 days
989.4
DO46378
0 years, female, NA, stage:III, alive, 843 days
978.1
DO46588
0 years, female, NA, stage:III, dead, 438 days
961.4
DO46336
0 years, female, NA, stage:IV, dead, 664 days
961.0
DO46386
0 years, female, NA, stage:III, dead, 1162 days
953.3
DO46392
0 years, female, NA, stage:III, dead, 628 days
896.7
DO46432
0 years, female, NA, stage:III, alive, 2218 days
894.1
DO46508
0 years, female, NA, stage:III, dead, 2101 days
891.7
DO46342
0 years, female, NA, stage:III, dead, 1398 days
880.7
DO46566
0 years, female, NA, stage:III, dead, 673 days
864.0
DO46560
0 years, female, NA, stage:IV, dead, 286 days
861.3
DO46340
0 years, female, NA, stage:III, dead, 616 days
861.2
DO46354
0 years, female, NA, stage:III, dead, 843 days
853.6
DO46330
0 years, female, NA, stage:III, dead, 684 days
817.8
DO46528
0 years, female, NA, stage:III, alive, 6139 days
807.3
DO46329
0 years, female, NA, stage:III, dead, 1699 days
801.4
DO46448
0 years, female, NA, stage:III, dead, 654 days
756.8
DO46326
0 years, female, NA, stage:III, dead, 701 days
746.9
DO46358
0 years, female, NA, stage:III, dead, 423 days
725.9
DO46571
0 years, female, NA, stage:III, dead, 243 days
717.1
DO46606
0 years, female, NA, stage:III, alive, 804 days
710.3
DO46374
0 years, female, NA, stage:III, dead, 1409 days
702.4
DO46352
0 years, female, NA, stage:III, dead, 677 days
692.4
DO46518
0 years, female, NA, stage:III, alive, 2960 days
691.3
DO46333
0 years, female, NA, stage:III, dead, 359 days
685.5
DO46390
0 years, female, NA, stage:III, dead, 374 days
671.6
DO46396
0 years, female, NA, stage:III, dead, 583 days
651.5
DO46372
0 years, female, NA, stage:III, dead, 1326 days
639.9
DO46591
0 years, female, NA, stage:III, dead, 195 days
638.3
DO46561
0 years, female, NA, stage:III, dead, 195 days
634.4
DO46344
0 years, female, NA, stage:III, dead, 642 days
632.7
DO46328
0 years, female, NA, stage:III, dead, 972 days
630.1
DO46332
0 years, female, NA, stage:III, dead, 689 days
615.2
DO46568
0 years, female, NA, stage:III, dead, 320 days
602.8
DO46338
0 years, female, NA, stage:III, dead, 596 days
602.5
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
599.3
DO46436
0 years, female, NA, stage:III, alive, 3193 days
579.9
DO46350
0 years, female, NA, stage:III, dead, 886 days
576.5
DO46366
0 years, female, NA, stage:III, dead, 2054 days
565.9
DO46576
0 years, female, NA, stage:III, alive, 133 days
556.9
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
552.6
DO46468
0 years, female, NA, stage:III, alive, 2776 days
544.4
DO46362
0 years, female, NA, stage:III, dead, 1639 days
540.1
DO46384
0 years, female, NA, stage:III, dead, 614 days
536.8
DO46602
0 years, female, NA, stage:III, dead, 205 days
532.3
DO46412
0 years, female, NA, stage:III, dead, 597 days
527.7
DO46346
0 years, female, NA, stage:III, dead, 1187 days
519.0
DO46364
0 years, female, NA, stage:III, dead, 806 days
503.9
DO46376
0 years, female, NA, stage:III, dead, 1430 days
501.4
DO46400
0 years, female, NA, stage:III, dead, 719 days
466.4
DO46398
0 years, female, NA, stage:III, alive, 437 days
456.6
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
431.2
DO46597
0 years, female, NA, stage:III, dead, 393 days
420.3
DO46533
0 years, female, NA, stage:III, alive, 3667 days
409.0
DO46463
0 years, female, NA, stage:III, dead, 2451 days
404.4
DO46356
0 years, female, NA, stage:III, dead, 911 days
363.1
DO46408
0 years, female, NA, stage:III, dead, 489 days
361.7
DO46402
0 years, female, NA, stage:III, dead, 511 days
319.5
DO46581
0 years, female, NA, stage:III, dead, 408 days
317.7
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
315.3
DO46611
0 years, female, NA, stage:III, dead, 734 days
280.6
DO46538
0 years, female, NA, stage:III, dead, 1527 days
237.7
DO46546
0 years, female, NA, stage:III, dead, 1889 days
110.4
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
96.0
DO46331
0 years, female, NA, stage:III, dead, 612 days
74.6
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
0.9
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.7
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.7
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
0.7
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.7
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.6
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.6
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
0.6
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.6
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
0.5
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.5
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
0.5
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.5
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
0.4
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
0.4
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
0.4
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.4
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
0.4
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
0.4
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
0.3
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
0.3
e9d416e7-f661-400a-896e-388545_D2
Tumor
0.3
15524912-685a-47ce-a824-567848_D2
Tumor
0.3
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
0.3
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
0.3
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.3
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
0.3
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
0.3
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.3
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
0.3
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
0.3
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
0.2
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.2
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.2
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.2
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
0.2
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.2
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.2
10c2d629-0287-4511-ac25-f29031_D2
Tumor
0.2
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.2
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
0.2
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
0.2
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.2
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
0.2
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.2
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.2
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
0.2
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.1
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
0.1
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
0.1
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.1
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
0.1
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
0.1
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.1
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
0.1
161317f3-1a39-438e-af45-cd2502_D2
Tumor
0.1
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
0.1
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.1
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
0.1
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
0.0
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
0.0
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
0.0
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
0.0
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.0
a3a26070-fb84-406a-8280-d555e6_D2
Normal
0.0
1db5574d-aca7-403c-8100-6e705f_D2
Normal
0.0
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
0.0
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.0
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
0.0
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-0.1
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-0.1
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-0.1
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.1
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.1
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-0.1
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
-0.1
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.1
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-0.1
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-0.1
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-0.1
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.1
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-0.2
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.2
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-0.2
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.2
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.2
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.2
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-0.2
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-0.2
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
-0.2
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-0.2
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.2
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.2
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.2
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-0.3
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
-0.3
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-0.3
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-0.3
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.3
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-0.3
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
-0.3
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.3
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-0.4
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.4
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.4
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-0.4
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.5
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.6
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.