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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA8 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
367.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1260.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1174.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1097.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1031.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1011.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1005.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
958.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
946.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
839.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
785.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
772.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
768.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
765.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
765.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
763.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
752.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
750.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
731.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
722.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
717.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
714.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
699.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
693.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
687.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
684.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
675.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
674.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
666.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
664.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
654.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
651.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
650.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
643.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
641.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
630.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
629.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
627.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
622.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
619.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
615.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
614.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
613.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
603.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
602.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
600.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
599.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
594.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
589.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
583.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
581.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
580.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
578.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
567.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
563.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
562.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
549.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
546.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
545.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
543.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
543.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
534.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
532.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
531.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
528.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
524.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
522.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
517.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
515.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
515.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
514.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
514.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
513.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
513.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
511.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
507.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
501.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
500.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
498.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
495.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
494.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
493.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
493.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
492.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
491.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
485.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
484.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
482.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
480.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
480.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
478.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
469.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
466.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
466.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
466.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
463.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
458.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
456.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
455.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
450.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
450.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
448.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
448.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
447.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
446.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
444.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
442.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
429.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
427.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
426.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
426.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
425.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
422.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
421.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
419.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
419.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
419.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
418.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
418.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
416.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
415.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
414.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
412.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
412.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
410.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
409.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
408.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
408.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
408.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
406.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
395.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
395.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
393.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
391.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
391.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
390.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
389.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
387.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
387.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
384.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
383.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
382.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
380.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
380.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
379.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
379.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
378.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
378.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
378.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
378.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
377.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
377.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
372.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
371.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
370.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
367.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
367.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
367.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
365.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
365.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
365.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
364.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
364.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
360.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
360.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
359.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
356.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
355.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
355.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
355.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
353.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
352.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
349.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
349.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
347.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
346.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
345.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
345.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
341.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
338.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
338.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
337.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
337.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
336.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
335.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
335.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
333.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
331.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
331.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
331.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
330.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
328.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
328.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
325.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
324.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
322.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
320.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
320.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
319.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
319.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
315.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
315.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
315.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
314.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
313.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
310.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
309.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
309.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
307.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
307.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
307.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
306.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
305.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
305.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
302.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
301.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
300.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
299.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
298.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
296.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
295.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
295.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
294.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
291.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
291.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
291.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
290.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
290.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
287.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
287.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
286.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
282.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
281.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
280.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
277.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
275.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
274.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
272.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
271.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
271.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
271.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
270.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
266.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
264.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
261.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
261.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
261.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
259.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
258.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
258.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
258.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
257.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
257.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
255.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
255.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
253.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
252.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
252.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
252.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
250.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
250.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
250.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
250.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
249.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
247.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
246.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
245.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
242.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
241.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
241.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
238.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
238.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
237.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
234.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
232.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
232.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
231.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
230.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
230.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
227.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
225.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
221.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
221.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
218.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
218.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
204.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
203.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
202.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
200.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
198.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
198.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
197.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
195.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
194.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
193.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
192.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
191.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
190.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
189.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
185.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
185.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
184.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
182.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
182.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
181.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
179.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
179.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
178.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
177.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
177.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
175.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
173.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
173.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
171.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
171.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
170.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
169.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
164.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
159.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
157.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
157.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
156.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
156.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
156.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
152.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
144.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
144.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
139.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
139.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
138.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
135.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
135.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
133.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
133.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
130.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
128.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
127.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
115.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
114.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
112.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
109.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
105.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
105.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
103.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
102.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
96.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
89.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
85.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
80.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
80.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
74.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
73.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
68.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
65.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
52.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
51.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
50.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
45.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
32.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
537.4
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
2953.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
1683.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
1522.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
1506.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
1465.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
1282.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1262.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
1215.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
1196.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
1134.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
1082.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1061.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
1058.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1045.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1040.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
949.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
902.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
894.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
891.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
884.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
883.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
877.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
877.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
868.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
864.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
851.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
850.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
849.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
848.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
840.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
824.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
822.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
822.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
819.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
815.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
810.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
806.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
804.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
803.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
799.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
790.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
789.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
789.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
780.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
761.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
760.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
757.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
730.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
730.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
728.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
726.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
713.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
704.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
702.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
699.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
698.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
697.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
696.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
696.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
694.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
687.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
682.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
682.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
680.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
672.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
670.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
659.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
656.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
653.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
644.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
642.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
640.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
635.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
634.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
631.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
622.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
615.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
605.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
600.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
598.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
594.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
593.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
584.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
584.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
583.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
580.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
580.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
579.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
577.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
576.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
571.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
570.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
566.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
565.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
560.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
558.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
552.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
546.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
532.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
532.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
529.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
528.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
523.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
523.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
515.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
512.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
511.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
507.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
506.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
505.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
501.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
499.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
497.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
496.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
493.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
492.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
488.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
487.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
487.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
487.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
486.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
485.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
479.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
478.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
478.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
472.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
470.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
468.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
468.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
461.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
460.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
460.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
457.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
456.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
456.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
455.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
451.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
449.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
442.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
438.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
431.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
429.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
428.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
426.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
426.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
426.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
422.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
422.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
422.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
420.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
413.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
409.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
408.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
405.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
402.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
400.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
399.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
385.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
380.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
380.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
374.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
373.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
371.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
365.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
356.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
350.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
342.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
340.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
338.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
326.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
321.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
315.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
315.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
315.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
314.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
303.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
300.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
298.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
297.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
297.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
297.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
296.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
295.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
295.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
294.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
285.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
265.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
255.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
246.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
246.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
242.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
239.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
239.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
236.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
233.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
227.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
225.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
222.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
221.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
219.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
204.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
195.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
191.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
189.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
186.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
184.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
183.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
180.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
173.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
172.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
161.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
160.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
152.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
139.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
134.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
127.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
119.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
114.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
114.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
106.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
104.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
101.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
100.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
98.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
93.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
82.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
79.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
68.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
63.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
59.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
46.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
0.4
227
Tumor
0.4
745
Tumor
0.4
865
Tumor
0.3
471
Tumor
0.3
533
Tumor
0.3
223
Tumor
0.3
443
Tumor
0.3
617
Tumor
0.3
957
Tumor
0.2
473
Tumor
0.2
537
Tumor
0.2
567
Tumor
0.2
1027
Tumor
0.2
161
Tumor
0.2
697
Tumor
0.2
535
Tumor
0.2
513
Tumor
0.2
211
Tumor
0.2
231
Tumor
0.2
313
Tumor
0.2
851
Tumor
0.2
327
Tumor
0.2
283
Tumor
0.2
212
Normal
0.2
978
Normal
0.2
955
Tumor
0.2
1043
Tumor
0.2
823
Tumor
0.2
523
Tumor
0.2
257
Tumor
0.1
353
Tumor
0.1
755
Tumor
0.1
1025
Tumor
0.1
518
Normal
0.1
286
Normal
0.1
145
Tumor
0.1
395
Tumor
0.1
363
Tumor
0.1
517
Tumor
0.1
1021
Tumor
0.1
525
Tumor
0.1
487
Tumor
0.1
482
Normal
0.1
514
Normal
0.1
777
Tumor
0.1
965
Tumor
0.1
228
Normal
0.1
553
Tumor
0.1
331
Tumor
0.1
497
Tumor
0.1
1026
Normal
0.1
557
Tumor
0.1
913
Tumor
0.1
147
Tumor
0.1
1042
Normal
0.1
926
Normal
0.1
185
Tumor
0.1
983
Tumor
0.1
1013
Tumor
0.1
982
Normal
0.1
448
Normal
0.1
284
Normal
0.1
912
Normal
0.1
663
Tumor
0.1
135
Tumor
0.1
661
Tumor
0.1
824
Normal
0.1
515
Tumor
0.1
385
Tumor
0.1
573
Tumor
0.1
1044
Normal
0.1
421
Tumor
0.1
864
Normal
0.1
815
Tumor
0.1
472
Normal
0.1
127
Tumor
0.1
884
Normal
0.1
224
Normal
0.1
916
Normal
0.1
964
Normal
0.1
635
Tumor
0.1
311
Tumor
0.0
474
Normal
0.0
956
Normal
0.0
534
Normal
0.0
918
Normal
0.0
484
Normal
0.0
756
Normal
0.0
488
Normal
0.0
526
Normal
0.0
1041
Tumor
0.0
937
Tumor
0.0
563
Tumor
0.0
713
Tumor
0.0
528
Normal
0.0
858
Normal
0.0
1032
Normal
0.0
356
Normal
0.0
976
Normal
0.0
944
Normal
0.0
882
Normal
0.0
966
Normal
0.0
332
Normal
0.0
123
Tumor
0.0
447
Tumor
0.0
524
Normal
0.0
462
Normal
0.0
728
Normal
0.0
778
Normal
0.0
981
Tumor
0.0
1014
Normal
0.0
698
Normal
0.0
737
Tumor
0.0
478
Normal
0.0
911
Tumor
0.0
364
Normal
0.0
411
Tumor
0.0
1028
Normal
0.0
963
Tumor
0.0
328
Normal
0.0
113
Tumor
0.0
665
Tumor
0.0
923
Tumor
0.0
455
Tumor
0.0
483
Tumor
0.0
1022
Normal
0.0
481
Tumor
0.0
922
Normal
0.0
285
Tumor
0.0
477
Tumor
0.0
852
Normal
0.0
137
Tumor
0.0
915
Tumor
0.0
187
Tumor
0.0
217
Tumor
0.0
873
Tumor
0.0
738
Normal
0.0
958
Normal
0.0
786
Normal
0.0
351
Tumor
0.0
494
Normal
0.0
416
Normal
0.0
536
Normal
0.0
361
Tumor
0.0
953
Tumor
0.0
546
Normal
0.0
868
Normal
0.0
723
Tumor
0.0
314
Normal
0.0
1016
Normal
0.0
866
Normal
0.0
527
Tumor
0.0
213
Tumor
0.0
641
Tumor
0.0
968
Normal
0.0
722
Normal
0.0
818
Normal
0.0
415
Tumor
0.0
451
Tumor
0.0
715
Tumor
0.0
938
Normal
0.0
1046
Normal
0.0
954
Normal
0.0
493
Tumor
0.0
267
Tumor
0.0
984
Normal
0.0
696
Normal
0.0
428
Normal
0.0
412
Normal
0.0
1031
Tumor
0.0
943
Tumor
0.0
355
Tumor
0.0
367
Tumor
0.0
387
Tumor
0.0
435
Tumor
0.0
297
Tumor
0.0
196
Normal
0.0
191
Tumor
0.0
742
Normal
0.0
558
Normal
0.0
628
Normal
-0.1
516
Normal
-0.1
375
Tumor
-0.1
492
Normal
-0.1
461
Tumor
-0.1
746
Normal
-0.1
814
Normal
-0.1
343
Tumor
-0.1
427
Tumor
-0.1
394
Normal
-0.1
491
Tumor
-0.1
171
Tumor
-0.1
414
Normal
-0.1
951
Tumor
-0.1
917
Tumor
-0.1
172
Normal
-0.1
648
Normal
-0.1
816
Normal
-0.1
131
Tumor
-0.1
721
Tumor
-0.1
863
Tumor
-0.1
312
Normal
-0.1
921
Tumor
-0.1
358
Normal
-0.1
785
Tumor
-0.1
262
Normal
-0.1
222
Normal
-0.1
422
Normal
-0.1
874
Normal
-0.1
862
Normal
-0.1
498
Normal
-0.1
714
Normal
-0.1
1045
Tumor
-0.1
424
Normal
-0.1
924
Normal
-0.1
188
Normal
-0.1
572
Normal
-0.1
423
Tumor
-0.1
432
Normal
-0.1
724
Normal
-0.1
881
Tumor
-0.1
554
Normal
-0.1
362
Normal
-0.1
218
Normal
-0.1
463
Tumor
-0.1
538
Normal
-0.1
272
Normal
-0.1
258
Normal
-0.1
571
Tumor
-0.1
298
Normal
-0.1
136
Normal
-0.1
142
Normal
-0.1
268
Normal
-0.1
716
Normal
-0.1
727
Tumor
-0.1
564
Normal
-0.1
195
Tumor
-0.1
436
Normal
-0.1
138
Normal
-0.1
952
Normal
-0.1
278
Normal
-0.1
695
Tumor
-0.1
446
Normal
-0.1
128
Normal
-0.1
878
Normal
-0.1
686
Normal
-0.1
232
Normal
-0.1
277
Tumor
-0.1
162
Normal
-0.1
452
Normal
-0.1
813
Tumor
-0.1
627
Tumor
-0.1
1015
Tumor
-0.1
341
Tumor
-0.1
434
Normal
-0.1
214
Normal
-0.1
467
Tumor
-0.1
857
Tumor
-0.1
568
Normal
-0.1
376
Normal
-0.1
388
Normal
-0.1
967
Tumor
-0.1
396
Normal
-0.1
861
Tumor
-0.1
433
Tumor
-0.1
357
Tumor
-0.1
391
Tumor
-0.1
271
Tumor
-0.1
466
Normal
-0.1
685
Tumor
-0.1
464
Normal
-0.1
618
Normal
-0.1
743
Tumor
-0.1
817
Tumor
-0.1
616
Normal
-0.1
352
Normal
-0.1
132
Normal
-0.1
413
Tumor
-0.1
148
Normal
-0.1
261
Tumor
-0.2
647
Tumor
-0.2
368
Normal
-0.2
545
Tumor
-0.2
186
Normal
-0.2
126
Normal
-0.2
914
Normal
-0.2
615
Tumor
-0.2
883
Tumor
-0.2
125
Tumor
-0.2
386
Normal
-0.2
114
Normal
-0.2
384
Normal
-0.2
393
Tumor
-0.2
636
Normal
-0.2
112
Tumor
-0.2
141
Tumor
-0.2
664
Normal
-0.2
431
Tumor
-0.2
666
Normal
-0.2
662
Normal
-0.2
426
Normal
-0.2
877
Tumor
-0.2
392
Normal
-0.2
111
Normal
-0.2
977
Tumor
-0.2
366
Normal
-0.2
574
Normal
-0.2
444
Normal
-0.2
342
Normal
-0.2
146
Normal
-0.2
465
Tumor
-0.2
671
Tumor
-0.2
221
Tumor
-0.2
354
Normal
-0.2
468
Normal
-0.2
642
Normal
-0.2
975
Tumor
-0.2
192
Normal
-0.2
425
Tumor
-0.2
344
Normal
-0.2
456
Normal
-0.2
124
Normal
-0.2
867
Tumor
-0.2
365
Tumor
-0.3
383
Tumor
-0.3
445
Tumor
-0.3
672
Normal
-0.3
744
Normal
-0.3
741
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.