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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SC5D is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
113.5
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
318.2
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
264.3
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
263.1
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
234.6
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
225.4
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
214.1
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
210.4
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
194.7
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
192.8
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
180.2
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
180.1
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
169.2
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
169.0
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
165.2
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
162.3
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
154.7
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
152.9
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
152.0
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
148.1
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
147.7
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
140.9
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
139.4
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
131.4
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
129.5
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
127.9
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
126.9
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
125.1
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
118.8
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
117.5
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
105.6
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
105.4
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
105.3
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
100.0
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
98.2
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
97.4
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
94.6
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
91.8
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
89.0
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
85.8
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
85.0
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
81.5
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
72.5
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
70.0
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
69.2
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
66.5
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
64.7
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
63.3
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
62.9
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
60.2
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
58.1
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
55.7
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
53.9
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
46.9
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
45.6
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
45.1
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
42.6
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
41.2
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
31.1
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
30.5
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
28.6
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
27.9
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
21.8
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
6.7
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SC5D is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
183.2
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
146.8
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
146.3
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
137.9
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
130.3
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
105.1
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
99.6
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
95.8
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
93.4
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
92.2
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
83.4
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
83.4
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
82.3
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
80.8
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
75.1
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
69.1
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
55.9
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
54.5
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
51.3
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
49.2
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
47.8
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
41.2
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
40.7
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
40.6
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
40.4
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
40.2
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
39.3
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
36.8
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
35.3
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
34.0
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
33.4
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
32.6
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
32.3
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
32.2
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
31.8
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
31.6
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
31.2
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
30.9
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
30.5
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
29.7
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
29.5
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
28.4
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
28.4
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
28.0
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
27.9
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
26.9
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
26.8
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
26.5
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
26.4
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
26.3
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
26.2
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
26.2
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
26.0
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
25.7
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
25.7
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
25.6
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
25.6
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
25.3
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
25.2
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
24.9
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
24.8
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
24.7
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
24.6
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
24.4
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
24.1
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
24.1
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
24.1
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
23.9
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
23.9
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
23.8
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
23.8
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
23.6
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
23.4
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
23.4
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
22.9
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
22.8
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
22.6
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
22.5
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
22.3
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
22.3
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
22.2
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
22.2
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
22.0
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
21.8
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
21.8
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
21.6
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
21.5
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
21.4
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
21.4
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
21.3
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
21.3
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
21.3
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
21.2
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
21.2
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
21.1
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
20.8
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
20.8
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
20.8
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
20.5
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
20.4
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
20.3
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
20.3
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
20.3
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
20.2
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
20.0
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
19.9
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
19.8
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
19.7
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
19.7
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
19.6
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
19.4
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
19.4
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
19.3
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
19.3
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
19.2
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
19.0
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
19.0
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
18.9
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
18.9
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
18.8
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
18.7
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
18.7
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
18.7
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
18.6
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
18.5
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
18.5
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
18.5
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
18.3
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
18.3
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
18.2
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
18.2
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
18.2
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
18.1
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
18.0
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
18.0
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
17.9
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
17.8
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
17.8
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
17.7
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
17.7
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
17.7
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
17.6
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
17.6
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
17.4
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
17.4
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
17.4
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
17.2
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
17.2
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
17.2
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
17.2
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
17.2
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
17.2
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
17.1
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
17.1
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
17.1
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
17.0
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
17.0
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
17.0
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
17.0
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
17.0
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
16.9
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
16.9
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
16.8
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
16.8
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
16.8
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
16.8
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
16.8
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
16.8
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
16.8
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
16.7
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
16.7
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
16.7
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
16.7
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
16.6
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
16.6
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
16.6
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
16.5
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
16.4
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
16.4
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
16.3
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
16.3
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
16.3
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
16.3
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
16.2
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
16.2
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
16.2
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
16.2
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
16.2
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
16.1
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
16.0
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
15.9
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
15.8
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
15.8
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
15.8
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
15.7
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
15.7
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
15.6
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
15.6
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
15.6
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
15.5
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
15.4
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
15.3
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
15.3
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
15.3
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
15.2
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
15.2
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
15.2
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
15.1
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
15.1
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
15.1
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
15.1
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
15.0
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
15.0
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
14.9
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
14.9
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
14.9
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
14.9
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
14.8
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
14.8
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
14.7
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
14.7
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
14.6
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
14.6
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
14.6
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
14.6
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
14.6
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
14.6
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
14.5
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
14.5
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
14.4
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
14.4
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
14.4
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
14.3
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
14.3
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
14.3
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
14.2
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
14.2
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
14.2
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
14.2
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
14.1
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
14.1
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
14.0
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
14.0
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
13.9
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
13.9
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
13.9
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
13.8
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
13.8
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
13.7
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
13.7
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
13.6
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
13.5
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
13.5
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
13.5
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
13.5
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
13.4
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
13.4
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
13.4
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
13.3
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
13.3
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
13.3
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
13.3
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
13.2
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
13.2
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
13.2
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
13.2
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
13.2
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
13.1
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
13.0
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
13.0
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
13.0
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
13.0
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
13.0
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
13.0
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
13.0
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
13.0
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
13.0
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
12.9
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
12.9
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
12.9
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
12.9
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
12.9
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
12.8
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
12.8
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
12.8
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
12.8
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
12.8
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
12.8
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
12.7
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
12.6
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
12.6
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
12.6
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
12.6
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
12.6
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
12.5
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
12.5
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
12.4
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
12.4
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
12.3
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
12.3
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
12.2
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
12.1
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
12.1
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
12.1
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
12.1
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
12.0
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
12.0
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
12.0
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
11.9
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
11.9
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
11.9
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
11.8
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
11.7
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
11.7
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
11.7
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
11.7
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
11.7
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
11.7
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
11.6
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
11.6
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
11.6
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
11.5
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
11.5
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
11.5
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
11.5
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
11.5
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
11.4
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
11.4
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
11.4
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
11.4
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
11.3
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
11.3
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
11.3
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
11.3
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
11.3
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
11.2
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
11.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
11.1
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
11.1
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
11.1
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
11.1
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
11.1
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
11.0
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
10.9
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
10.9
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
10.9
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
10.8
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
10.8
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
10.8
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
10.7
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
10.7
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
10.7
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
10.7
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
10.6
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
10.6
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
10.6
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
10.6
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
10.6
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
10.5
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
10.5
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
10.5
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
10.4
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
10.4
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
10.4
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
10.4
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
10.3
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
10.3
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
10.3
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
10.3
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
10.3
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
10.3
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
10.3
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
10.2
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
10.2
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
10.1
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
10.1
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
10.1
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
10.1
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
10.0
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
10.0
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
10.0
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
9.9
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
9.9
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
9.8
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
9.8
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
9.6
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
9.6
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
9.6
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
9.5
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
9.4
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
9.4
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
9.3
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
9.3
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
9.3
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
9.2
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
9.2
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
9.1
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
9.1
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
9.0
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
9.0
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
9.0
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
9.0
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
9.0
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
8.9
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
8.9
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
8.6
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
8.6
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
8.6
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
8.6
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
8.6
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
8.5
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
8.4
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
8.4
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
8.4
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
8.3
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
8.3
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
8.3
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
8.3
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
8.2
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
8.2
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
8.2
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
8.1
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
8.1
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
8.0
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
8.0
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
7.9
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
7.9
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
7.8
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
7.8
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
7.7
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
7.7
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
7.6
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
7.6
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
7.6
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
7.5
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
7.5
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
7.5
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
7.3
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
7.3
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
7.3
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
7.3
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
7.3
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
7.1
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
7.1
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
7.1
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
7.1
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
7.1
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
7.0
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
7.0
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
7.0
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
7.0
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
7.0
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
6.9
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
6.8
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
6.8
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
6.8
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
6.7
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
6.7
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
6.7
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
6.6
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
6.4
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
6.3
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
6.2
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
6.2
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
6.2
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
6.1
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
6.1
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
6.1
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
6.1
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
6.1
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
6.0
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
6.0
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
5.9
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
5.9
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
5.8
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
5.7
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
5.6
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
5.6
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
5.5
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
5.5
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
5.3
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
5.3
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
5.3
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
5.2
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
5.2
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
5.1
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
5.1
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
5.0
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
5.0
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
5.0
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
4.8
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
4.8
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
4.7
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
4.7
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
4.7
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
4.7
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
4.7
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
4.6
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
4.5
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
4.4
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
4.3
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
4.2
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
4.2
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
4.0
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
4.0
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
3.9
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
3.9
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
3.9
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
3.9
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
3.7
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
3.7
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
3.6
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
3.4
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
3.4
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
3.2
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
3.1
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
2.8
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
2.5
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
2.5
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SC5D is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.7
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
62.9
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
53.0
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
48.4
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
39.1
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
35.6
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
34.5
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
34.5
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
33.1
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
31.3
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
31.1
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
30.4
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
30.1
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
29.1
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
27.8
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
27.6
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
26.9
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
26.6
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
26.3
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
26.2
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
25.1
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
25.0
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
25.0
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
24.6
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
24.4
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
24.2
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
23.8
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
23.7
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
23.3
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
23.3
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
22.6
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
22.3
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
22.3
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
22.2
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
22.1
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
22.0
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
21.9
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
21.8
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
21.8
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
21.6
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
21.4
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
21.1
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
21.0
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
20.5
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
20.5
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
20.2
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
19.8
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
19.6
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
19.6
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
19.5
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
19.4
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
19.4
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
19.3
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
19.1
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
18.9
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
18.7
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
18.5
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
18.4
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
18.4
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
18.3
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
17.9
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
17.8
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
17.7
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
17.6
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
17.5
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
17.5
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
17.1
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
17.0
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
17.0
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
16.9
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
16.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
16.1
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
16.0
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
15.8
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
15.5
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
15.4
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
15.0
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
14.6
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
14.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
14.5
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
14.3
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
14.2
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
13.9
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
12.9
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
12.9
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
12.8
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
12.8
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
12.4
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
12.2
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
12.0
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
11.8
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
11.7
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
11.7
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
10.5
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
9.7
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
9.7
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
9.2
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
9.1
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SC5D is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.1
Number of samples
282
Samples
Sample
Description
TPM
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
126.9
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
98.4
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
85.6
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
68.8
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
56.1
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
51.4
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
48.4
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.6
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
43.7
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
41.4
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
39.4
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
39.3
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
37.8
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
36.2
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
36.2
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
35.3
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
34.7
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
34.2
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
33.8
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
33.6
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
32.1
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
31.5
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
31.2
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
31.2
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
31.1
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
30.0
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
29.1
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
28.9
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
27.9
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
27.6
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
27.5
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
25.2
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
24.8
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
24.1
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
24.0
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
23.6
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
23.5
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
23.3
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
23.3
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
23.3
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
23.2
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
23.1
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
21.9
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
21.8
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
21.7
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
21.0
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
20.7
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
19.9
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
19.7
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
19.6
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
19.4
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
19.2
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
19.1
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
19.0
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
19.0
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
18.9
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
18.6
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
18.5
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
18.5
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
18.5
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
18.4
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
18.2
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
18.1
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
18.0
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
17.9
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
17.8
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
17.7
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
17.6
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
17.6
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
17.6
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
17.5
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
17.1
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
16.9
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
16.9
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
16.7
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
16.6
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
16.5
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
16.5
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
16.5
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
16.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
16.4
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
16.4
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
15.9
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
15.9
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
15.8
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
15.7
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
15.7
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
15.6
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
15.2
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
15.2
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
15.1
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
15.1
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
15.1
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
15.0
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
15.0
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.9
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
14.8
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
14.7
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
14.6
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
14.6
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
14.6
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
14.5
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
14.5
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
14.1
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
14.1
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
14.1
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
13.9
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
13.7
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
13.7
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
13.5
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
13.5
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
13.5
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
13.5
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
13.5
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
13.4
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
13.3
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
13.3
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
13.2
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
13.0
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
13.0
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
13.0
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
13.0
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
13.0
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
13.0
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
12.9
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
12.8
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
12.8
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
12.7
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
12.7
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
12.7
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
12.5
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
12.5
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
12.5
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
12.4
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
12.4
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
12.3
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
12.3
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
12.2
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
12.2
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
12.2
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
12.1
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
12.1
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
11.9
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
11.9
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
11.8
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
11.8
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
11.7
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
11.7
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
11.7
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
11.6
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
11.6
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
11.6
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
11.5
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
11.5
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
11.4
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
11.4
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
11.3
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
11.3
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
11.2
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
11.2
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
11.2
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
11.1
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
11.1
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
11.1
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
11.1
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
10.9
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
10.8
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
10.7
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
10.7
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
10.7
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
10.5
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
10.4
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
10.4
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
10.4
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
10.4
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
10.3
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
10.3
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
10.2
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
10.2
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
10.1
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
9.9
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
9.9
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
9.9
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
9.9
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
9.8
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
9.7
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
9.7
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
9.6
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
9.5
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
9.5
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
9.4
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
9.4
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
9.3
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
9.2
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
9.2
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
9.2
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
9.1
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
9.1
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
9.1
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
9.0
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
8.9
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
8.9
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
8.8
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
8.7
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
8.6
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
8.5
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
8.5
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
8.4
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
8.4
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
8.3
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
8.2
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
8.2
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
8.2
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
8.1
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
8.0
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
7.9
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
7.9
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
7.7
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
7.7
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
7.7
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
7.5
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
7.5
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
7.4
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
7.4
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
7.4
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
7.3
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
7.1
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
7.0
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
6.9
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
6.9
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
6.8
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
6.8
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
6.7
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
6.5
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
6.5
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
6.4
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
6.3
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
6.3
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
6.1
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
6.1
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
6.1
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
6.0
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
6.0
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
5.9
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
5.9
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
5.7
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
5.7
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
5.6
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
5.4
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
5.4
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
5.3
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
5.2
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
5.1
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
5.0
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
5.0
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
4.9
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
4.9
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
4.7
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
4.6
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
4.4
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
4.3
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
4.3
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
4.2
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
4.1
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
4.0
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
4.0
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
3.9
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
3.9
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
3.8
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
3.7
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
3.6
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
3.6
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
3.5
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
3.5
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
3.3
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
3.2
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
3.1
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
2.9
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
2.7
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
2.6
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
1.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0078660003
Tumor
2.4
CPT0076330003
Tumor
0.6
CPT0092800003
Normal
0.6
CPT0078800003
Tumor
0.6
CPT0088780001
Normal
0.6
CPT0002270011
Tumor
0.5
CPT0001180009
Tumor
0.5
CPT0092310003
Normal
0.5
CPT0088640003
Normal
0.5
CPT0001190001
Normal
0.5
CPT0000790001
Normal
0.5
CPT0088970003
Tumor
0.5
CPT0010160003
Tumor
0.5
CPT0089480003
Normal
0.5
CPT0000890001
Normal
0.5
CPT0023360001
Normal
0.5
CPT0069000003
Tumor
0.4
CPT0078840001
Normal
0.4
CPT0006530001
Normal
0.4
CPT0086370003
Normal
0.4
CPT0065450001
Normal
0.4
CPT0063320003
Tumor
0.4
CPT0088480003
Tumor
0.4
CPT0015730003
Tumor
0.4
CPT0006950001
Normal
0.4
CPT0065820001
Normal
0.4
CPT0001230001
Normal
0.4
CPT0088710001
Normal
0.4
CPT0079430001
Normal
0.4
CPT0086890003
Normal
0.3
CPT0063330001
Normal
0.3
CPT0023690003
Tumor
0.3
CPT0001350001
Normal
0.3
CPT0019130003
Tumor
0.3
CPT0015810003
Tumor
0.3
CPT0086950003
Tumor
0.3
CPT0088500001
Normal
0.3
CPT0014350001
Normal
0.3
CPT0078670001
Normal
0.3
CPT0063640001
Normal
0.3
CPT0077500001
Normal
0.3
CPT0079000001
Normal
0.3
CPT0078830003
Tumor
0.3
CPT0087050003
Normal
0.2
CPT0088550004
Tumor
0.2
CPT0001510001
Normal
0.2
CPT0065750003
Tumor
0.2
CPT0020020001
Normal
0.2
CPT0077310003
Tumor
0.2
CPT0065810003
Tumor
0.2
CPT0019160001
Normal
0.2
CPT0078940001
Normal
0.2
CPT0014130001
Normal
0.2
CPT0007860003
Tumor
0.2
CPT0002370001
Normal
0.2
CPT0023710001
Normal
0.2
CPT0066430001
Normal
0.2
CPT0082010001
Normal
0.2
CPT0007870001
Normal
0.2
CPT0089040001
Normal
0.2
CPT0020120003
Tumor
0.1
CPT0025060001
Normal
0.1
CPT0001270001
Normal
0.1
CPT0078930003
Tumor
0.1
CPT0088690003
Tumor
0.1
CPT0000660001
Normal
0.1
CPT0077110003
Tumor
0.1
CPT0010120001
Normal
0.1
CPT0023350003
Tumor
0.1
CPT0001550001
Normal
0.1
CPT0066520001
Normal
0.1
CPT0079510001
Normal
0.1
CPT0079300001
Normal
0.1
CPT0081620001
Normal
0.1
CPT0075170001
Normal
0.0
CPT0007470001
Normal
0.0
CPT0077140001
Normal
0.0
CPT0069160003
Tumor
0.0
CPT0026420001
Normal
0.0
CPT0015910003
Tumor
0.0
CPT0078530001
Normal
0.0
CPT0025610001
Normal
0.0
CPT0077320001
Normal
0.0
CPT0076350001
Normal
0.0
CPT0025230003
Tumor
0.0
CPT0086830003
Normal
0.0
CPT0025880003
Tumor
0.0
CPT0079230003
Tumor
0.0
CPT0014160003
Tumor
0.0
CPT0075560003
Tumor
-0.1
CPT0078990003
Tumor
-0.1
CPT0002350011
Tumor
-0.1
CPT0000870016
Tumor
-0.1
CPT0086030003
Tumor
-0.1
CPT0086360003
Tumor
-0.1
CPT0069190001
Normal
-0.1
CPT0089020003
Tumor
-0.1
CPT0069010001
Normal
-0.1
CPT0079380003
Tumor
-0.2
CPT0065870003
Tumor
-0.2
CPT0006900003
Tumor
-0.2
CPT0006730001
Normal
-0.2
CPT0092790003
Tumor
-0.2
CPT0089460004
Tumor
-0.2
CPT0020130001
Normal
-0.2
CPT0081600003
Tumor
-0.2
CPT0001340003
Tumor
-0.3
CPT0079410003
Tumor
-0.3
CPT0006630003
Tumor
-0.3
CPT0092730003
Tumor
-0.3
CPT0086820003
Tumor
-0.3
CPT0063630003
Tumor
-0.3
CPT0025580004
Tumor
-0.3
CPT0075570001
Normal
-0.3
CPT0079480003
Tumor
-0.3
CPT0019990003
Tumor
-0.4
CPT0088760003
Tumor
-0.4
CPT0010170001
Normal
-0.4
CPT0081990003
Tumor
-0.4
CPT0087040003
Tumor
-0.4
CPT0092160003
Tumor
-0.4
CPT0084590001
Normal
-0.4
CPT0001220008
Tumor
-0.4
CPT0066480003
Tumor
-0.4
CPT0025050003
Tumor
-0.4
CPT0092290003
Tumor
-0.5
CPT0075130003
Tumor
-0.5
CPT0088630003
Tumor
-0.5
CPT0079270003
Tumor
-0.5
CPT0071150004
Tumor
-0.5
CPT0014470001
Normal
-0.5
CPT0084560003
Tumor
-0.5
CPT0006440003
Tumor
-0.5
CPT0086870003
Tumor
-0.6
CPT0066470004
Tumor
-0.6
CPT0078510003
Tumor
-0.6
CPT0026410003
Tumor
-0.6
CPT0010110003
Tumor
-0.6
CPT0001500009
Tumor
-0.7
CPT0077490003
Tumor
-0.7
CPT0000640003
Tumor
-0.8
CPT0088900003
Tumor
-0.8
CPT0085670003
Tumor
-0.9
CPT0064400001
Normal
-0.9
CPT0092740003
Normal
-0.9
CPT0000780007
Tumor
-0.9
CPT0014370004
Tumor
-0.9
CPT0086970003
Normal
-0.9
CPT0001540009
Tumor
-1.0
CPT0001260009
Tumor
-1.0
CPT0065430003
Tumor
-1.0
CPT0064370003
Tumor
-1.0
CPT0007320003
Tumor
-1.1
CPT0088920001
Normal
-1.3
CPT0088570001
Normal
-1.5
CPT0092190003
Normal
-2.0
CPT0025920001
Normal
-3.2
CPT0065690003
Tumor
N/A
CPT0011240003
Tumor
N/A
CPT0012670003
Tumor
N/A
CPT0012920003
Normal
N/A
CPT0025170003
Tumor
N/A
CPT0024670003
Tumor
N/A
CPT0012640003
Normal
N/A
CPT0021240003
Tumor
N/A
CPT0075720003
Tumor
N/A
CPT0012570003
Normal
N/A
CPT0017850003
Tumor
N/A
CPT0012900004
Tumor
N/A
CPT0011410003
Tumor
N/A
CPT0079180003
Tumor
N/A
CPT0012080003
Tumor
N/A
CPT0009000003
Tumor
N/A
CPT0025110003
Tumor
N/A
CPT0024680001
Normal
N/A
CPT0012090003
Normal
N/A
CPT0009020003
Normal
N/A
CPT0065930003
Tumor
N/A
CPT0012770003
Normal
N/A
CPT0012180003
Tumor
N/A
CPT0017410003
Tumor
N/A
CPT0025290003
Tumor
N/A
CPT0012550003
Tumor
N/A
CPT0018250001
Normal
N/A
CPT0017450001
Normal
N/A
CPT0014450004
Tumor
N/A
CPT0025350003
Tumor
N/A
CPT0012370003
Tumor
N/A
CPT0012280003
Tumor
N/A
CPT0009080003
Normal
N/A
CPT0081880003
Tumor
N/A
CPT0013790003
Normal
N/A
CPT0012290003
Normal
N/A
CPT0009060003
Tumor
N/A
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.