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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SC5D is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
339.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
287.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
268.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
259.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
232.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
231.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
221.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
203.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
188.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
184.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
177.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
176.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
157.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
150.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
146.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
143.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
139.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
136.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
133.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
132.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
129.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
129.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
127.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
127.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
126.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
126.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
124.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
123.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
120.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
119.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
119.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
115.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
112.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
112.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
112.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
111.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
109.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
107.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
106.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
105.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
103.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
102.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
102.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
101.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
97.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
96.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
94.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
90.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
90.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
89.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
88.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
86.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
86.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
86.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
85.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
84.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
84.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
84.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
83.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
83.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
83.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
82.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
82.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
82.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
82.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
81.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
81.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
79.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
79.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
79.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
77.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
77.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
77.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
76.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
75.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
75.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
75.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
75.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
74.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
74.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
73.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
72.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
72.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
72.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
72.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
72.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
72.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
71.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
70.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
70.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
69.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
68.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
64.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
64.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
64.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
63.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
62.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
62.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
62.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
61.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
60.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
59.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
59.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
58.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
58.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
57.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
57.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
56.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
56.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
56.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
56.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
56.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
55.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
54.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
54.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
52.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
51.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
49.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
48.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
48.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
47.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
47.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
47.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
47.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
44.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
37.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
32.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.3
513
Tumor
1.2
921
Tumor
1.0
462
Normal
0.9
746
Normal
0.9
534
Normal
0.9
435
Tumor
0.9
537
Tumor
0.8
554
Normal
0.8
342
Normal
0.8
964
Normal
0.7
738
Normal
0.7
1026
Normal
0.7
714
Normal
0.7
816
Normal
0.7
882
Normal
0.7
967
Tumor
0.7
142
Normal
0.6
482
Normal
0.6
1032
Normal
0.6
526
Normal
0.6
477
Tumor
0.6
862
Normal
0.6
298
Normal
0.6
517
Tumor
0.6
744
Normal
0.6
1022
Normal
0.6
412
Normal
0.6
956
Normal
0.6
481
Tumor
0.6
456
Normal
0.5
618
Normal
0.5
742
Normal
0.5
616
Normal
0.5
518
Normal
0.5
982
Normal
0.5
546
Normal
0.5
424
Normal
0.5
358
Normal
0.5
484
Normal
0.5
1013
Tumor
0.5
341
Tumor
0.5
745
Tumor
0.5
222
Normal
0.5
132
Normal
0.5
465
Tumor
0.5
452
Normal
0.5
1014
Normal
0.5
944
Normal
0.5
756
Normal
0.5
723
Tumor
0.5
436
Normal
0.5
488
Normal
0.5
314
Normal
0.5
568
Normal
0.5
257
Tumor
0.4
615
Tumor
0.4
878
Normal
0.4
127
Tumor
0.4
363
Tumor
0.4
728
Normal
0.4
698
Normal
0.4
938
Normal
0.4
968
Normal
0.4
866
Normal
0.4
648
Normal
0.4
474
Normal
0.4
664
Normal
0.4
186
Normal
0.4
924
Normal
0.4
528
Normal
0.4
414
Normal
0.4
196
Normal
0.4
786
Normal
0.4
864
Normal
0.4
357
Tumor
0.4
1045
Tumor
0.4
1043
Tumor
0.4
391
Tumor
0.4
863
Tumor
0.4
912
Normal
0.4
128
Normal
0.4
361
Tumor
0.4
428
Normal
0.4
354
Normal
0.4
451
Tumor
0.4
558
Normal
0.4
286
Normal
0.3
394
Normal
0.3
868
Normal
0.3
232
Normal
0.3
1016
Normal
0.3
228
Normal
0.3
426
Normal
0.3
851
Tumor
0.3
627
Tumor
0.3
1042
Normal
0.3
464
Normal
0.3
1041
Tumor
0.3
572
Normal
0.3
564
Normal
0.3
111
Normal
0.3
416
Normal
0.3
448
Normal
0.3
514
Normal
0.3
494
Normal
0.3
218
Normal
0.3
666
Normal
0.3
818
Normal
0.2
328
Normal
0.2
884
Normal
0.2
423
Tumor
0.2
966
Normal
0.2
148
Normal
0.2
466
Normal
0.2
628
Normal
0.2
984
Normal
0.2
1046
Normal
0.2
686
Normal
0.2
422
Normal
0.2
272
Normal
0.2
778
Normal
0.2
332
Normal
0.2
958
Normal
0.2
824
Normal
0.2
955
Tumor
0.2
162
Normal
0.2
376
Normal
0.2
741
Tumor
0.2
472
Normal
0.2
926
Normal
0.2
212
Normal
0.2
1028
Normal
0.1
1021
Tumor
0.1
313
Tumor
0.1
258
Normal
0.1
114
Normal
0.1
366
Normal
0.1
356
Normal
0.1
432
Normal
0.1
146
Normal
0.1
722
Normal
0.1
396
Normal
0.1
478
Normal
0.1
642
Normal
0.1
952
Normal
0.1
874
Normal
0.1
636
Normal
0.1
352
Normal
0.1
172
Normal
0.1
1025
Tumor
0.1
136
Normal
0.1
852
Normal
0.1
344
Normal
0.1
516
Normal
0.1
716
Normal
0.1
922
Normal
0.1
785
Tumor
0.1
473
Tumor
0.1
413
Tumor
0.1
415
Tumor
0.0
113
Tumor
0.0
126
Normal
0.0
662
Normal
0.0
858
Normal
0.0
421
Tumor
0.0
392
Normal
0.0
284
Normal
0.0
327
Tumor
0.0
217
Tumor
0.0
468
Normal
0.0
138
Normal
0.0
386
Normal
0.0
877
Tumor
0.0
976
Normal
0.0
124
Normal
0.0
914
Normal
0.0
491
Tumor
0.0
918
Normal
0.0
696
Normal
0.0
563
Tumor
-0.1
147
Tumor
-0.1
571
Tumor
-0.1
1044
Normal
-0.1
278
Normal
-0.1
214
Normal
-0.1
981
Tumor
-0.1
387
Tumor
-0.1
446
Normal
-0.1
262
Normal
-0.1
267
Tumor
-0.1
483
Tumor
-0.1
388
Normal
-0.1
492
Normal
-0.1
227
Tumor
-0.1
574
Normal
-0.1
695
Tumor
-0.1
431
Tumor
-0.1
915
Tumor
-0.2
553
Tumor
-0.2
954
Normal
-0.2
524
Normal
-0.2
141
Tumor
-0.2
364
Normal
-0.2
815
Tumor
-0.2
923
Tumor
-0.2
953
Tumor
-0.2
755
Tumor
-0.2
957
Tumor
-0.2
538
Normal
-0.2
224
Normal
-0.2
365
Tumor
-0.2
368
Normal
-0.2
312
Normal
-0.2
161
Tumor
-0.2
617
Tumor
-0.2
671
Tumor
-0.2
355
Tumor
-0.2
536
Normal
-0.2
362
Normal
-0.2
171
Tumor
-0.3
916
Normal
-0.3
965
Tumor
-0.3
523
Tumor
-0.3
883
Tumor
-0.3
498
Normal
-0.3
455
Tumor
-0.3
131
Tumor
-0.3
978
Normal
-0.3
567
Tumor
-0.3
461
Tumor
-0.3
145
Tumor
-0.3
137
Tumor
-0.3
867
Tumor
-0.3
463
Tumor
-0.4
1031
Tumor
-0.4
185
Tumor
-0.4
672
Normal
-0.4
285
Tumor
-0.4
777
Tumor
-0.4
434
Normal
-0.4
641
Tumor
-0.4
268
Normal
-0.4
823
Tumor
-0.4
737
Tumor
-0.4
525
Tumor
-0.4
647
Tumor
-0.4
123
Tumor
-0.4
277
Tumor
-0.5
125
Tumor
-0.5
135
Tumor
-0.5
925
Tumor
-0.5
445
Tumor
-0.5
231
Tumor
-0.5
384
Normal
-0.5
861
Tumor
-0.5
515
Tumor
-0.5
192
Normal
-0.5
817
Tumor
-0.5
271
Tumor
-0.5
353
Tumor
-0.5
873
Tumor
-0.5
911
Tumor
-0.6
665
Tumor
-0.6
447
Tumor
-0.6
444
Normal
-0.6
663
Tumor
-0.6
367
Tumor
-0.6
261
Tumor
-0.6
963
Tumor
-0.6
715
Tumor
-0.6
661
Tumor
-0.6
393
Tumor
-0.6
983
Tumor
-0.6
814
Normal
-0.6
471
Tumor
-0.6
487
Tumor
-0.6
188
Normal
-0.6
975
Tumor
-0.6
221
Tumor
-0.6
977
Tumor
-0.6
635
Tumor
-0.7
713
Tumor
-0.7
443
Tumor
-0.7
727
Tumor
-0.7
497
Tumor
-0.7
535
Tumor
-0.7
411
Tumor
-0.7
331
Tumor
-0.7
191
Tumor
-0.8
493
Tumor
-0.8
195
Tumor
-0.8
112
Tumor
-0.8
724
Normal
-0.8
375
Tumor
-0.8
813
Tumor
-0.8
557
Tumor
-0.8
223
Tumor
-0.8
533
Tumor
-0.8
857
Tumor
-0.9
721
Tumor
-0.9
743
Tumor
-0.9
433
Tumor
-0.9
573
Tumor
-0.9
951
Tumor
-0.9
881
Tumor
-1.0
865
Tumor
-1.0
187
Tumor
-1.0
685
Tumor
-1.0
297
Tumor
-1.0
351
Tumor
-1.0
527
Tumor
-1.0
425
Tumor
-1.0
943
Tumor
-1.0
937
Tumor
-1.0
913
Tumor
-1.1
427
Tumor
-1.1
1015
Tumor
-1.1
213
Tumor
-1.1
311
Tumor
-1.2
385
Tumor
-1.3
283
Tumor
-1.3
383
Tumor
-1.4
697
Tumor
-1.4
545
Tumor
-1.4
467
Tumor
-1.6
343
Tumor
-1.7
917
Tumor
-1.8
395
Tumor
-1.9
211
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
