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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC5 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.6
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
75.1
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
66.2
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
62.1
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
57.5
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
56.2
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
55.3
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
52.2
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
51.2
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
49.1
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
47.3
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
46.6
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
39.3
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
39.1
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
38.3
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
38.1
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
38.1
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
37.5
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
36.0
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
34.9
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
34.9
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
34.8
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
34.5
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
34.0
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
33.8
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
33.6
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
33.3
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
32.3
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
31.3
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
31.3
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
30.7
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
30.0
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
29.3
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
29.2
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
28.7
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
27.5
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
26.9
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
26.4
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
26.4
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
25.4
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
25.1
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
24.7
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
23.2
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
23.1
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
22.9
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
22.9
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
22.7
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
22.6
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
22.2
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
21.5
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
21.3
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
20.5
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
20.4
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
19.6
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
19.0
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
18.4
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
18.3
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
18.2
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
17.7
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
17.3
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
16.7
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
15.1
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
14.1
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
13.2
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC5 is validated prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.2
Number of samples
521
Samples
Sample
Description
TPM
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
68.0
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
61.9
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
53.6
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
51.2
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
48.6
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
46.2
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
45.5
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
44.6
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
44.4
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
44.3
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
43.4
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
43.0
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
41.4
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
40.5
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
40.1
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
39.3
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
39.0
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
38.2
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
38.0
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
38.0
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
37.6
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
37.6
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
37.4
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
37.2
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
36.8
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
36.7
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
36.3
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
36.1
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
35.7
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
35.7
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
35.5
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
35.4
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
35.3
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
35.2
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
35.2
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
35.2
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
34.8
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
34.7
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
34.4
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
34.4
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
34.1
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
34.0
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
33.8
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
33.7
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
33.5
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
33.4
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
33.2
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
32.9
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
32.6
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
32.6
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
32.6
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
32.6
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
32.4
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
32.3
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
32.0
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
32.0
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
32.0
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
31.9
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
31.3
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
30.9
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
30.9
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
30.9
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
30.8
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
30.7
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
30.6
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
30.4
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
30.3
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
30.1
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
29.9
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
29.9
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
29.8
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
29.8
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
29.8
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
29.7
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
29.6
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
29.6
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
29.6
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
29.6
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
29.5
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
29.4
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
29.2
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
29.2
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
29.2
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
29.1
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
28.9
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
28.9
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
28.8
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
28.8
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
28.7
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
28.6
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
28.5
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
28.5
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
28.5
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
28.5
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
28.5
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
28.5
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
28.4
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
28.4
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
28.4
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
28.3
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
28.3
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
28.1
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
28.1
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
28.1
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
28.1
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
28.0
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
28.0
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
27.9
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
27.9
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
27.8
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
27.8
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
27.8
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
27.7
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
27.6
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
27.6
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
27.5
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
27.4
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
27.4
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
27.3
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
27.3
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
27.2
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
27.1
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
27.0
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
27.0
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
27.0
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
27.0
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
26.9
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
26.9
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
26.9
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
26.8
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
26.7
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
26.7
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
26.5
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
26.5
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
26.5
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
26.3
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
26.3
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
26.3
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
26.2
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
26.2
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
26.2
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
26.0
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
26.0
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
26.0
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
25.9
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
25.9
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
25.8
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
25.8
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
25.6
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
25.6
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
25.5
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
25.5
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
25.5
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
25.4
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
25.3
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
25.3
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
25.3
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
25.2
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
25.2
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
25.2
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
25.1
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
25.1
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
25.1
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
25.1
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
25.1
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
25.0
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
24.9
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
24.9
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
24.8
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
24.8
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
24.7
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
24.6
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
24.5
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
24.4
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
24.4
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
24.4
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
24.4
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
24.3
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
24.3
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
24.3
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
24.2
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
24.2
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
24.1
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
24.1
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
24.0
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
23.9
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
23.9
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
23.9
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
23.8
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
23.8
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
23.6
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
23.6
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
23.5
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
23.5
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
23.5
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
23.4
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
23.3
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
23.3
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
23.2
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
23.1
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
23.1
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
23.1
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
22.8
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
22.8
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
22.8
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
22.7
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
22.7
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
22.6
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
22.6
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
22.6
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
22.6
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
22.5
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
22.5
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
22.4
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
22.2
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
22.2
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
22.2
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
22.2
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
22.1
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
22.1
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
22.0
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
22.0
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
22.0
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
22.0
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
22.0
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
22.0
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
21.9
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
21.9
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
21.7
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
21.7
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
21.7
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
21.7
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
21.6
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
21.6
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
21.6
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
21.6
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
21.5
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
21.5
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
21.4
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
21.4
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
21.3
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
21.2
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
21.1
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
21.1
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
21.0
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
20.9
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
20.9
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
20.9
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
20.8
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
20.8
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
20.8
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
20.6
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
20.6
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
20.6
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
20.5
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
20.5
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
20.2
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
20.2
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
20.2
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
20.2
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
20.0
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
20.0
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
20.0
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
20.0
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
19.9
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
19.8
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
19.8
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
19.8
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
19.8
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
19.8
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
19.7
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
19.7
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
19.7
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
19.6
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
19.6
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
19.5
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
19.4
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
19.4
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
19.4
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
19.4
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
19.4
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
19.3
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
19.3
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
19.2
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
19.2
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
19.0
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
19.0
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
19.0
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
19.0
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
19.0
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
19.0
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
18.9
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
18.9
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
18.8
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
18.8
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
18.6
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
18.6
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
18.6
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
18.5
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
18.5
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
18.4
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
18.4
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
18.3
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
18.3
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
18.3
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
18.3
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
18.2
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
18.2
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
18.2
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
18.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
18.1
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
18.1
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
18.0
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
18.0
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
18.0
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
18.0
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
17.9
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
17.9
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
17.9
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
17.9
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
17.8
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
17.8
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
17.8
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
17.8
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
17.8
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
17.7
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
17.7
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
17.7
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
17.6
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
17.6
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
17.5
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
17.5
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
17.4
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
17.4
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
17.4
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
17.4
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
17.3
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
17.3
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
17.2
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
17.2
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
17.0
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
17.0
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
16.9
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
16.8
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
16.8
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
16.8
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
16.8
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
16.7
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
16.6
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
16.6
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
16.6
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
16.4
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
16.4
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
16.3
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
16.3
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
16.2
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
16.2
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
16.1
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
16.1
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
16.1
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
16.0
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
16.0
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
16.0
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
15.9
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
15.9
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
15.9
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
15.8
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
15.8
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
15.7
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
15.7
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
15.6
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
15.6
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
15.5
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
15.5
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
15.5
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
15.5
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
15.5
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
15.4
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
15.3
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
15.2
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
15.2
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
15.1
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
15.1
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
15.0
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
15.0
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
14.9
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
14.9
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
14.9
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
14.8
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
14.8
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
14.8
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
14.8
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
14.7
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
14.7
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
14.7
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
14.6
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
14.6
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
14.6
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
14.5
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
14.5
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
14.5
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
14.4
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
14.4
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
14.4
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
14.4
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
14.2
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
14.2
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
14.2
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
14.1
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
14.0
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
14.0
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
14.0
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
13.9
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
13.8
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
13.8
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
13.7
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
13.7
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
13.6
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
13.6
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
13.5
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
13.5
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
13.5
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
13.4
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
13.4
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
13.4
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
13.3
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
13.3
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
13.3
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
13.3
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
13.3
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
13.2
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
13.2
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
13.1
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
13.1
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
13.0
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
13.0
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
13.0
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
12.9
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
12.9
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
12.9
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
12.8
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
12.7
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
12.6
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
12.6
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
12.6
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
12.5
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
12.4
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
12.4
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
12.3
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
12.3
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
12.2
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
12.1
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
12.0
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
12.0
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
12.0
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
12.0
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
11.9
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
11.8
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
11.7
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
11.6
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
11.4
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
11.4
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
11.3
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
11.3
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
11.2
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
11.1
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
11.1
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
11.1
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
11.0
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
11.0
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
11.0
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
11.0
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
10.9
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
10.9
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
10.9
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
10.8
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
10.6
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
10.6
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
10.6
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
10.6
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
10.6
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
10.5
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
10.4
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
10.4
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
10.3
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
10.2
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
9.9
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
9.7
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
9.6
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
9.5
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
9.5
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
9.4
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
9.3
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
8.9
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
8.9
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
8.8
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
8.7
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
8.6
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
8.5
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
8.5
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
8.3
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
8.1
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
7.9
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
7.8
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
7.5
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
7.3
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
7.3
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
7.1
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
7.1
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
6.7
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
6.3
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
6.1
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
6.0
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
5.4
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
5.4
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
5.1
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
4.6
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
4.6
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
3.3
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
2.5
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC5 is validated prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
46.9
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
42.2
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
37.6
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
34.5
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
33.6
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
31.7
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
31.4
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
30.2
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
29.7
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
28.8
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
28.3
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
28.2
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
27.7
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
27.6
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
27.6
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
27.2
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
26.3
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
26.2
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
26.0
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
25.8
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
25.3
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
25.1
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
25.0
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
25.0
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
24.9
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
24.8
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
24.8
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
24.7
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
24.5
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
24.4
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
24.3
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
24.0
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
23.8
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
23.7
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
23.1
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
23.0
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
23.0
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
23.0
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
22.9
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
22.4
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
22.4
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
22.1
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
22.0
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
21.9
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
21.9
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
21.8
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
21.8
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
21.6
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
21.5
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
20.3
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
19.8
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
19.5
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
19.2
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
18.6
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
18.4
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
18.3
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
18.2
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
18.2
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
18.0
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
17.2
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
17.1
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
16.5
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
16.0
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
16.0
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
15.8
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
15.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
15.3
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
15.1
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
15.0
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
14.6
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
14.5
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
14.3
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
14.2
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
14.1
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
13.4
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
13.3
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
13.2
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
13.1
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
13.0
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
12.8
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
12.6
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
12.6
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
12.6
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
11.5
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
11.2
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
11.2
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
11.2
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
10.9
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
10.4
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
10.1
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
9.7
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
9.7
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
9.5
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
9.3
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
8.9
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
8.7
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
8.1
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
8.1
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC5 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.8
Number of samples
282
Samples
Sample
Description
TPM
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
74.4
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
50.4
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
49.4
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
45.0
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
42.6
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
40.6
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
40.3
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
40.0
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
38.4
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
38.0
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
37.9
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
36.7
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
36.3
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
35.3
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
35.1
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
34.6
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
34.3
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
33.5
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
33.1
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
32.9
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
32.4
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
31.8
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
30.9
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
30.8
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
30.8
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
30.7
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
30.2
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
30.1
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
30.1
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
29.7
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
29.7
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
29.6
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
29.1
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
28.6
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
28.5
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
28.2
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
28.1
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
27.9
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
27.6
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
27.5
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
27.5
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
27.1
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
26.7
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
26.6
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
26.6
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
26.6
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
26.5
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
26.4
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
26.3
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
26.2
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
26.2
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
26.0
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
26.0
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
25.8
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
25.4
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
25.1
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
25.1
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
25.0
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
24.6
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
24.5
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
24.5
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
24.3
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
24.1
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
24.0
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
24.0
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
23.8
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
23.8
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
23.7
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
23.7
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
23.7
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
23.6
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
22.7
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
22.4
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
22.3
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
22.3
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
22.3
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
22.2
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
22.0
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
21.9
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
21.8
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
21.8
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
21.7
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
21.6
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
21.6
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
21.6
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
21.5
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
21.4
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
21.2
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
21.0
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
20.9
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
20.8
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
20.7
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
20.7
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
20.5
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
20.4
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
20.0
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
19.9
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
19.9
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
19.9
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
19.9
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
19.8
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
19.8
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
19.8
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
19.7
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
19.7
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
19.5
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
19.3
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
19.2
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
19.2
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
19.2
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
19.2
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
19.1
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
19.0
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
19.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
18.9
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
18.9
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
18.9
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
18.9
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
18.8
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
18.8
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
18.8
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
18.8
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
18.7
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
18.7
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
18.6
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
18.3
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
18.1
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
18.1
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
18.0
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
17.9
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
17.8
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
17.7
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
17.6
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
17.6
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
17.5
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
17.4
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
17.4
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
17.3
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
17.3
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
17.3
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
17.3
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
17.2
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
17.2
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
17.2
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
17.2
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
17.0
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
17.0
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
16.9
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
16.9
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
16.9
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
16.8
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
16.7
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
16.6
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
16.6
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
16.4
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
16.3
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
16.3
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
16.2
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
16.2
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
16.2
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
16.2
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
16.0
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
15.9
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
15.9
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
15.7
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
15.7
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
15.6
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
15.5
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
15.5
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
15.4
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
15.3
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
15.3
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
15.2
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
15.2
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
15.2
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
15.0
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
14.9
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
14.9
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
14.8
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
14.8
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
14.6
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
14.6
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
14.6
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
14.5
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
14.5
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
14.5
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
14.3
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
14.3
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
14.3
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
14.2
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
14.2
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
14.2
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
14.2
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
14.0
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
13.9
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
13.8
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
13.8
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
13.8
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
13.8
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
13.8
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
13.7
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
13.7
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
13.7
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
13.6
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
13.6
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
13.4
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
13.3
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
13.2
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
13.1
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
13.1
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
13.0
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
12.9
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
12.9
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
12.8
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
12.8
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
12.6
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
12.6
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
12.6
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
12.6
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
12.5
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
12.5
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
12.4
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
12.3
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
12.3
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
12.2
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
12.1
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
12.0
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
12.0
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
11.9
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
11.9
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
11.8
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
11.8
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
11.8
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
11.5
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
11.4
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
11.4
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
11.3
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
11.1
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
11.1
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
11.1
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
11.0
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
11.0
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
11.0
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
10.7
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
10.7
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
10.5
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
10.5
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
10.4
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
10.4
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
10.3
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.2
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
10.1
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
10.1
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
10.1
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
9.9
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
9.7
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
9.6
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
9.4
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
9.3
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
9.2
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
9.0
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
8.9
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
8.6
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
8.4
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
8.3
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
7.9
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
7.8
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
7.6
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
7.1
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
7.0
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
7.0
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
6.8
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
6.8
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
6.3
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
6.2
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
6.1
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
5.7
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
3.3
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
2.6
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
0.0
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0011240003
Tumor
0.7
CPT0088630003
Tumor
0.6
CPT0015910003
Tumor
0.6
CPT0012080003
Tumor
0.5
CPT0000640003
Tumor
0.5
CPT0000780007
Tumor
0.5
CPT0006630003
Tumor
0.5
CPT0014370004
Tumor
0.5
CPT0088760003
Tumor
0.5
CPT0010120001
Normal
0.5
CPT0086870003
Tumor
0.4
CPT0017410003
Tumor
0.4
CPT0079480003
Tumor
0.4
CPT0088900003
Tumor
0.4
CPT0006440003
Tumor
0.4
CPT0071150004
Tumor
0.4
CPT0025170003
Tumor
0.4
CPT0081600003
Tumor
0.4
CPT0078990003
Tumor
0.4
CPT0077490003
Tumor
0.4
CPT0085670003
Tumor
0.4
CPT0075720003
Tumor
0.4
CPT0020120003
Tumor
0.4
CPT0088550004
Tumor
0.4
CPT0009060003
Tumor
0.3
CPT0092730003
Tumor
0.3
CPT0000870016
Tumor
0.3
CPT0001270001
Normal
0.3
CPT0025350003
Tumor
0.3
CPT0063320003
Tumor
0.3
CPT0010160003
Tumor
0.3
CPT0077320001
Normal
0.3
CPT0077110003
Tumor
0.3
CPT0001540009
Tumor
0.3
CPT0065930003
Tumor
0.3
CPT0065690003
Tumor
0.3
CPT0066480003
Tumor
0.3
CPT0084590001
Normal
0.3
CPT0092190003
Normal
0.3
CPT0012900004
Tumor
0.3
CPT0065870003
Tumor
0.2
CPT0024680001
Normal
0.2
CPT0014130001
Normal
0.2
CPT0026410003
Tumor
0.2
CPT0012370003
Tumor
0.2
CPT0092790003
Tumor
0.2
CPT0000660001
Normal
0.2
CPT0081990003
Tumor
0.2
CPT0066470004
Tumor
0.2
CPT0078830003
Tumor
0.2
CPT0079180003
Tumor
0.2
CPT0069160003
Tumor
0.2
CPT0007860003
Tumor
0.2
CPT0023690003
Tumor
0.2
CPT0025610001
Normal
0.2
CPT0025880003
Tumor
0.2
CPT0063640001
Normal
0.2
CPT0012640003
Normal
0.2
CPT0001260009
Tumor
0.2
CPT0079510001
Normal
0.2
CPT0009000003
Tumor
0.2
CPT0014470001
Normal
0.2
CPT0079000001
Normal
0.2
CPT0078530001
Normal
0.2
CPT0089460004
Tumor
0.1
CPT0001230001
Normal
0.1
CPT0079270003
Tumor
0.1
CPT0021240003
Tumor
0.1
CPT0089040001
Normal
0.1
CPT0088710001
Normal
0.1
CPT0069000003
Tumor
0.1
CPT0078660003
Tumor
0.1
CPT0079300001
Normal
0.1
CPT0077310003
Tumor
0.1
CPT0088570001
Normal
0.1
CPT0079380003
Tumor
0.1
CPT0088780001
Normal
0.1
CPT0079230003
Tumor
0.1
CPT0006950001
Normal
0.1
CPT0069190001
Normal
0.1
CPT0087040003
Tumor
0.1
CPT0075570001
Normal
0.1
CPT0075560003
Tumor
0.1
CPT0012290003
Normal
0.1
CPT0086830003
Normal
0.1
CPT0066520001
Normal
0.1
CPT0088690003
Tumor
0.1
CPT0002370001
Normal
0.1
CPT0010110003
Tumor
0.1
CPT0001550001
Normal
0.1
CPT0019990003
Tumor
0.1
CPT0092290003
Tumor
0.1
CPT0025110003
Tumor
0.1
CPT0069010001
Normal
0.1
CPT0092160003
Tumor
0.1
CPT0007470001
Normal
0.1
CPT0086030003
Tumor
0.1
CPT0025290003
Tumor
0.0
CPT0006530001
Normal
0.0
CPT0019130003
Tumor
0.0
CPT0092310003
Normal
0.0
CPT0012090003
Normal
0.0
CPT0088500001
Normal
0.0
CPT0009020003
Normal
0.0
CPT0019160001
Normal
0.0
CPT0025580004
Tumor
0.0
CPT0065820001
Normal
0.0
CPT0064370003
Tumor
0.0
CPT0020020001
Normal
0.0
CPT0006900003
Tumor
0.0
CPT0018250001
Normal
0.0
CPT0012770003
Normal
0.0
CPT0001510001
Normal
0.0
CPT0081620001
Normal
0.0
CPT0002270011
Tumor
0.0
CPT0017850003
Tumor
0.0
CPT0078940001
Normal
0.0
CPT0025920001
Normal
0.0
CPT0014350001
Normal
0.0
CPT0012920003
Normal
0.0
CPT0015810003
Tumor
0.0
CPT0001340003
Tumor
0.0
CPT0006730001
Normal
0.0
CPT0064400001
Normal
0.0
CPT0089020003
Tumor
0.0
CPT0026420001
Normal
0.0
CPT0023360001
Normal
0.0
CPT0089480003
Normal
-0.1
CPT0077140001
Normal
-0.1
CPT0075170001
Normal
-0.1
CPT0009080003
Normal
-0.1
CPT0086360003
Tumor
-0.1
CPT0010170001
Normal
-0.1
CPT0081880003
Tumor
-0.1
CPT0086370003
Normal
-0.1
CPT0088920001
Normal
-0.1
CPT0025060001
Normal
-0.1
CPT0007870001
Normal
-0.1
CPT0088640003
Normal
-0.1
CPT0082010001
Normal
-0.1
CPT0023710001
Normal
-0.1
CPT0078840001
Normal
-0.1
CPT0077500001
Normal
-0.1
CPT0086890003
Normal
-0.1
CPT0065450001
Normal
-0.1
CPT0001220008
Tumor
-0.1
CPT0092740003
Normal
-0.1
CPT0013790003
Normal
-0.1
CPT0066430001
Normal
-0.1
CPT0020130001
Normal
-0.1
CPT0078510003
Tumor
-0.1
CPT0088970003
Tumor
-0.1
CPT0012670003
Tumor
-0.1
CPT0075130003
Tumor
-0.1
CPT0000790001
Normal
-0.1
CPT0000890001
Normal
-0.1
CPT0063630003
Tumor
-0.2
CPT0024670003
Tumor
-0.2
CPT0017450001
Normal
-0.2
CPT0078670001
Normal
-0.2
CPT0086970003
Normal
-0.2
CPT0012570003
Normal
-0.2
CPT0002350011
Tumor
-0.2
CPT0065430003
Tumor
-0.2
CPT0015730003
Tumor
-0.2
CPT0025050003
Tumor
-0.2
CPT0001350001
Normal
-0.2
CPT0014160003
Tumor
-0.2
CPT0092800003
Normal
-0.2
CPT0078930003
Tumor
-0.2
CPT0087050003
Normal
-0.2
CPT0079430001
Normal
-0.2
CPT0076330003
Tumor
-0.2
CPT0065750003
Tumor
-0.2
CPT0001500009
Tumor
-0.2
CPT0025230003
Tumor
-0.2
CPT0012180003
Tumor
-0.2
CPT0063330001
Normal
-0.2
CPT0084560003
Tumor
-0.2
CPT0001190001
Normal
-0.2
CPT0014450004
Tumor
-0.2
CPT0086820003
Tumor
-0.2
CPT0001180009
Tumor
-0.3
CPT0086950003
Tumor
-0.3
CPT0065810003
Tumor
-0.3
CPT0007320003
Tumor
-0.3
CPT0012280003
Tumor
-0.3
CPT0076350001
Normal
-0.3
CPT0079410003
Tumor
-0.3
CPT0012550003
Tumor
-0.3
CPT0088480003
Tumor
-0.4
CPT0023350003
Tumor
-0.7
CPT0078800003
Tumor
-0.7
CPT0011410003
Tumor
-0.8
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
