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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
48.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
2.7
358
Normal
2.7
354
Normal
2.4
344
Normal
2.1
352
Normal
1.9
357
Tumor
1.9
341
Tumor
1.6
343
Tumor
1.6
351
Tumor
1.5
741
Tumor
1.3
743
Tumor
1.3
353
Tumor
1.2
452
Normal
1.0
744
Normal
0.9
192
Normal
0.9
737
Tumor
0.8
425
Tumor
0.8
431
Tumor
0.8
665
Tumor
0.8
727
Tumor
0.7
131
Tumor
0.7
641
Tumor
0.7
635
Tumor
0.7
863
Tumor
0.7
615
Tumor
0.6
112
Tumor
0.6
171
Tumor
0.6
661
Tumor
0.6
951
Tumor
0.6
636
Normal
0.6
921
Tumor
0.6
642
Normal
0.6
465
Tumor
0.6
618
Normal
0.5
127
Tumor
0.5
627
Tumor
0.5
426
Normal
0.5
478
Normal
0.5
221
Tumor
0.5
628
Normal
0.5
724
Normal
0.5
217
Tumor
0.5
497
Tumor
0.5
444
Normal
0.5
671
Tumor
0.5
414
Normal
0.5
483
Tumor
0.5
297
Tumor
0.5
487
Tumor
0.5
413
Tumor
0.5
283
Tumor
0.5
715
Tumor
0.5
786
Normal
0.5
211
Tumor
0.4
672
Normal
0.4
471
Tumor
0.4
698
Normal
0.4
331
Tumor
0.4
422
Normal
0.4
427
Tumor
0.4
421
Tumor
0.4
424
Normal
0.4
815
Tumor
0.3
384
Normal
0.3
423
Tumor
0.3
883
Tumor
0.3
311
Tumor
0.3
126
Normal
0.3
572
Normal
0.3
666
Normal
0.3
664
Normal
0.3
695
Tumor
0.3
663
Tumor
0.3
756
Normal
0.3
415
Tumor
0.3
443
Tumor
0.3
975
Tumor
0.3
261
Tumor
0.3
268
Normal
0.3
355
Tumor
0.3
954
Normal
0.3
224
Normal
0.3
616
Normal
0.3
662
Normal
0.3
428
Normal
0.3
498
Normal
0.3
1014
Normal
0.3
723
Tumor
0.3
473
Tumor
0.2
367
Tumor
0.2
867
Tumor
0.2
536
Normal
0.2
538
Normal
0.2
912
Normal
0.2
123
Tumor
0.2
647
Tumor
0.2
938
Normal
0.2
913
Tumor
0.2
146
Normal
0.2
884
Normal
0.2
976
Normal
0.2
161
Tumor
0.2
231
Tumor
0.2
816
Normal
0.2
823
Tumor
0.2
915
Tumor
0.2
865
Tumor
0.2
944
Normal
0.2
818
Normal
0.2
714
Normal
0.2
563
Tumor
0.2
984
Normal
0.2
617
Tumor
0.2
472
Normal
0.2
553
Tumor
0.2
1046
Normal
0.2
817
Tumor
0.2
124
Normal
0.2
924
Normal
0.2
515
Tumor
0.2
716
Normal
0.2
191
Tumor
0.2
953
Tumor
0.2
461
Tumor
0.2
435
Tumor
0.2
383
Tumor
0.2
1044
Normal
0.2
285
Tumor
0.2
446
Normal
0.2
1031
Tumor
0.2
937
Tumor
0.2
874
Normal
0.2
1015
Tumor
0.1
513
Tumor
0.1
864
Normal
0.1
481
Tumor
0.1
545
Tumor
0.1
448
Normal
0.1
852
Normal
0.1
982
Normal
0.1
881
Tumor
0.1
878
Normal
0.1
187
Tumor
0.1
858
Normal
0.1
911
Tumor
0.1
742
Normal
0.1
218
Normal
0.1
492
Normal
0.1
447
Tumor
0.1
271
Tumor
0.1
857
Tumor
0.1
111
Normal
0.1
364
Normal
0.1
114
Normal
0.1
272
Normal
0.1
433
Tumor
0.1
1045
Tumor
0.1
546
Normal
0.1
535
Tumor
0.1
778
Normal
0.1
516
Normal
0.1
978
Normal
0.1
434
Normal
0.1
484
Normal
0.1
882
Normal
0.1
232
Normal
0.1
463
Tumor
0.1
554
Normal
0.1
824
Normal
0.1
477
Tumor
0.1
141
Tumor
0.1
814
Normal
0.1
284
Normal
0.1
524
Normal
0.1
528
Normal
0.1
977
Tumor
0.1
312
Normal
0.0
968
Normal
0.0
491
Tumor
0.0
517
Tumor
0.0
385
Tumor
0.0
917
Tumor
0.0
328
Normal
0.0
534
Normal
0.0
466
Normal
0.0
868
Normal
0.0
956
Normal
0.0
943
Tumor
0.0
482
Normal
0.0
474
Normal
0.0
196
Normal
0.0
416
Normal
0.0
147
Tumor
0.0
145
Tumor
0.0
685
Tumor
0.0
862
Normal
0.0
866
Normal
0.0
137
Tumor
0.0
925
Tumor
0.0
1016
Normal
0.0
922
Normal
0.0
212
Normal
0.0
213
Tumor
0.0
277
Tumor
0.0
412
Normal
0.0
456
Normal
0.0
391
Tumor
0.0
574
Normal
0.0
445
Tumor
0.0
923
Tumor
0.0
365
Tumor
0.0
918
Normal
0.0
432
Normal
0.0
963
Tumor
0.0
983
Tumor
0.0
332
Normal
0.0
195
Tumor
0.0
488
Normal
0.0
257
Tumor
0.0
873
Tumor
0.0
958
Normal
0.0
188
Normal
0.0
952
Normal
0.0
981
Tumor
0.0
648
Normal
0.0
777
Tumor
0.0
877
Tumor
0.0
172
Normal
0.0
468
Normal
0.0
1041
Tumor
0.0
964
Normal
0.0
451
Tumor
0.0
186
Normal
0.0
494
Normal
0.0
696
Normal
0.0
135
Tumor
-0.1
148
Normal
-0.1
557
Tumor
-0.1
728
Normal
-0.1
686
Normal
-0.1
966
Normal
-0.1
267
Tumor
-0.1
436
Normal
-0.1
464
Normal
-0.1
214
Normal
-0.1
363
Tumor
-0.1
533
Tumor
-0.1
813
Tumor
-0.1
113
Tumor
-0.1
462
Normal
-0.1
861
Tumor
-0.1
916
Normal
-0.1
514
Normal
-0.1
493
Tumor
-0.1
1043
Tumor
-0.1
1026
Normal
-0.1
926
Normal
-0.1
526
Normal
-0.1
222
Normal
-0.1
361
Tumor
-0.1
185
Tumor
-0.1
738
Normal
-0.1
386
Normal
-0.1
722
Normal
-0.1
142
Normal
-0.1
366
Normal
-0.1
368
Normal
-0.1
746
Normal
-0.1
278
Normal
-0.1
568
Normal
-0.1
392
Normal
-0.1
262
Normal
-0.1
125
Tumor
-0.1
558
Normal
-0.1
697
Tumor
-0.1
362
Normal
-0.1
388
Normal
-0.1
376
Normal
-0.1
258
Normal
-0.1
785
Tumor
-0.1
467
Tumor
-0.1
955
Tumor
-0.1
136
Normal
-0.1
128
Normal
-0.1
1013
Tumor
-0.1
721
Tumor
-0.1
914
Normal
-0.1
375
Tumor
-0.1
1042
Normal
-0.2
537
Tumor
-0.2
1025
Tumor
-0.2
957
Tumor
-0.2
223
Tumor
-0.2
162
Normal
-0.2
387
Tumor
-0.2
314
Normal
-0.2
356
Normal
-0.2
1032
Normal
-0.2
1027
Tumor
-0.2
228
Normal
-0.2
286
Normal
-0.2
394
Normal
-0.2
518
Normal
-0.2
327
Tumor
-0.2
395
Tumor
-0.2
455
Tumor
-0.2
527
Tumor
-0.2
1022
Normal
-0.2
967
Tumor
-0.2
313
Tumor
-0.2
411
Tumor
-0.2
1021
Tumor
-0.2
573
Tumor
-0.2
523
Tumor
-0.2
1028
Normal
-0.2
132
Normal
-0.3
525
Tumor
-0.3
298
Normal
-0.3
393
Tumor
-0.3
713
Tumor
-0.3
965
Tumor
-0.3
851
Tumor
-0.3
567
Tumor
-0.3
396
Normal
-0.4
227
Tumor
-0.4
571
Tumor
-0.4
564
Normal
-0.5
138
Normal
-0.5
755
Tumor
-0.5
745
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
