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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
327.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
276.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
246.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
238.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
234.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
226.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
220.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
218.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
188.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
187.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
177.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
175.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
172.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
164.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
154.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
147.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
146.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
140.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
139.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
138.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
136.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
135.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
135.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
126.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
125.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
121.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
120.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
120.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
120.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
120.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
118.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
118.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
118.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
114.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
112.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
112.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
111.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
109.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
108.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
108.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
104.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
103.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
102.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
102.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
100.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
100.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
97.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
97.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
95.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
94.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
94.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
93.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
93.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
92.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
92.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
92.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
91.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
91.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
90.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
89.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
89.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
89.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
88.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
88.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
88.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
87.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
86.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
86.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
85.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
85.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
84.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
82.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
82.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
81.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
81.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
80.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
79.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
79.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
79.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
79.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
77.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
77.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
76.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
76.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
74.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
74.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
74.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
73.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
73.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
72.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
72.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
72.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
72.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
71.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
71.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
70.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
70.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
69.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
68.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
67.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
66.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
66.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
64.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
63.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
61.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
60.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
59.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
58.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
56.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
55.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
55.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
54.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
54.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
54.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
53.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
51.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
51.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
51.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
51.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
49.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
49.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
47.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
47.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
46.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
44.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
40.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
40.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
39.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
38.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
35.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
316.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
214.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
208.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
175.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
163.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
152.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
149.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
129.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
119.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
118.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
113.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
113.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
112.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
112.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
112.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
110.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
104.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
103.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
103.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
103.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
102.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
102.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
94.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
92.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
92.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
91.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
88.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
88.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
86.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
85.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
85.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
83.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
79.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
78.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
78.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
77.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
76.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
75.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
74.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
72.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
71.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
71.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
71.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
69.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
69.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
68.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
67.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
67.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
64.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
64.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
63.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
63.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
61.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
60.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
59.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
59.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
58.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
58.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
57.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
56.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
55.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
55.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
54.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
54.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
53.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
52.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
52.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
50.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
49.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
48.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
48.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
47.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
46.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
45.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
45.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
44.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
44.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
43.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
42.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
38.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
26.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
1.7
363
Tumor
1.3
125
Tumor
1.2
921
Tumor
1.1
421
Tumor
1.1
1027
Tumor
1.0
851
Tumor
0.8
533
Tumor
0.8
525
Tumor
0.8
727
Tumor
0.8
171
Tumor
0.7
147
Tumor
0.7
271
Tumor
0.6
685
Tumor
0.6
491
Tumor
0.6
671
Tumor
0.5
817
Tumor
0.5
537
Tumor
0.4
221
Tumor
0.4
131
Tumor
0.4
641
Tumor
0.4
443
Tumor
0.4
744
Normal
0.4
957
Tumor
0.4
124
Normal
0.4
135
Tumor
0.4
425
Tumor
0.4
953
Tumor
0.4
223
Tumor
0.4
741
Tumor
0.3
185
Tumor
0.3
313
Tumor
0.3
384
Normal
0.3
227
Tumor
0.3
571
Tumor
0.3
123
Tumor
0.3
353
Tumor
0.3
354
Normal
0.3
444
Normal
0.3
283
Tumor
0.3
342
Normal
0.3
344
Normal
0.3
665
Tumor
0.3
573
Tumor
0.3
557
Tumor
0.2
261
Tumor
0.2
483
Tumor
0.2
343
Tumor
0.2
231
Tumor
0.2
187
Tumor
0.2
881
Tumor
0.2
395
Tumor
0.2
192
Normal
0.2
435
Tumor
0.2
455
Tumor
0.2
146
Normal
0.2
358
Normal
0.2
311
Tumor
0.2
1021
Tumor
0.1
351
Tumor
0.1
277
Tumor
0.1
563
Tumor
0.1
617
Tumor
0.1
917
Tumor
0.1
867
Tumor
0.1
258
Normal
0.1
695
Tumor
0.1
111
Normal
0.1
272
Normal
0.1
498
Normal
0.1
1013
Tumor
0.1
1025
Tumor
0.1
352
Normal
0.1
391
Tumor
0.1
172
Normal
0.1
713
Tumor
0.1
662
Normal
0.1
672
Normal
0.1
224
Normal
0.1
222
Normal
0.1
471
Tumor
0.1
567
Tumor
0.1
742
Normal
0.1
467
Tumor
0.1
538
Normal
0.1
268
Normal
0.0
422
Normal
0.0
878
Normal
0.0
1045
Tumor
0.0
341
Tumor
0.0
127
Tumor
0.0
126
Normal
0.0
297
Tumor
0.0
883
Tumor
0.0
278
Normal
0.0
715
Tumor
0.0
298
Normal
0.0
196
Normal
0.0
815
Tumor
0.0
716
Normal
0.0
186
Normal
0.0
112
Tumor
0.0
745
Tumor
0.0
916
Normal
0.0
214
Normal
0.0
965
Tumor
0.0
128
Normal
0.0
663
Tumor
0.0
478
Normal
0.0
162
Normal
0.0
312
Normal
0.0
434
Normal
0.0
728
Normal
0.0
954
Normal
-0.1
661
Tumor
-0.1
414
Normal
-0.1
616
Normal
-0.1
778
Normal
-0.1
487
Tumor
-0.1
388
Normal
-0.1
314
Normal
-0.1
188
Normal
-0.1
228
Normal
-0.1
385
Tumor
-0.1
618
Normal
-0.1
468
Normal
-0.1
686
Normal
-0.1
636
Normal
-0.1
356
Normal
-0.1
142
Normal
-0.1
477
Tumor
-0.1
423
Tumor
-0.1
355
Tumor
-0.1
877
Tumor
-0.1
148
Normal
-0.1
195
Tumor
-0.1
332
Normal
-0.1
364
Normal
-0.1
361
Tumor
-0.1
447
Tumor
-0.1
786
Normal
-0.1
816
Normal
-0.1
114
Normal
-0.1
958
Normal
-0.1
465
Tumor
-0.1
262
Normal
-0.1
456
Normal
-0.1
431
Tumor
-0.1
516
Normal
-0.1
466
Normal
-0.1
862
Normal
-0.1
426
Normal
-0.1
1044
Normal
-0.1
746
Normal
-0.1
918
Normal
-0.1
666
Normal
-0.1
938
Normal
-0.1
424
Normal
-0.1
628
Normal
-0.1
738
Normal
-0.1
375
Tumor
-0.1
492
Normal
-0.1
386
Normal
-0.1
574
Normal
-0.1
534
Normal
-0.2
394
Normal
-0.2
161
Tumor
-0.2
362
Normal
-0.2
366
Normal
-0.2
642
Normal
-0.2
722
Normal
-0.2
436
Normal
-0.2
464
Normal
-0.2
448
Normal
-0.2
217
Tumor
-0.2
564
Normal
-0.2
824
Normal
-0.2
284
Normal
-0.2
452
Normal
-0.2
392
Normal
-0.2
1043
Tumor
-0.2
232
Normal
-0.2
952
Normal
-0.2
723
Tumor
-0.2
416
Normal
-0.2
432
Normal
-0.2
138
Normal
-0.2
357
Tumor
-0.2
383
Tumor
-0.2
411
Tumor
-0.2
721
Tumor
-0.2
212
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
132
Normal
-0.2
981
Tumor
-0.2
984
Normal
-0.2
428
Normal
-0.2
572
Normal
-0.2
818
Normal
-0.2
852
Normal
-0.2
376
Normal
-0.2
191
Tumor
-0.2
488
Normal
-0.2
648
Normal
-0.2
664
Normal
-0.2
868
Normal
-0.2
472
Normal
-0.2
412
Normal
-0.2
527
Tumor
-0.2
328
Normal
-0.2
914
Normal
-0.2
396
Normal
-0.2
647
Tumor
-0.2
813
Tumor
-0.2
427
Tumor
-0.2
286
Normal
-0.2
1026
Normal
-0.2
968
Normal
-0.2
517
Tumor
-0.2
874
Normal
-0.2
1032
Normal
-0.2
267
Tumor
-0.2
864
Normal
-0.2
415
Tumor
-0.2
546
Normal
-0.2
365
Tumor
-0.2
976
Normal
-0.2
481
Tumor
-0.2
387
Tumor
-0.2
923
Tumor
-0.2
922
Normal
-0.2
433
Tumor
-0.2
545
Tumor
-0.2
924
Normal
-0.2
494
Normal
-0.2
1031
Tumor
-0.2
882
Normal
-0.2
145
Tumor
-0.2
944
Normal
-0.2
858
Normal
-0.3
446
Normal
-0.3
977
Tumor
-0.3
462
Normal
-0.3
823
Tumor
-0.3
524
Normal
-0.3
528
Normal
-0.3
141
Tumor
-0.3
368
Normal
-0.3
568
Normal
-0.3
482
Normal
-0.3
943
Tumor
-0.3
696
Normal
-0.3
714
Normal
-0.3
484
Normal
-0.3
956
Normal
-0.3
756
Normal
-0.3
493
Tumor
-0.3
975
Tumor
-0.3
137
Tumor
-0.3
926
Normal
-0.3
218
Normal
-0.3
635
Tumor
-0.3
1016
Normal
-0.3
136
Normal
-0.3
526
Normal
-0.3
463
Tumor
-0.3
514
Normal
-0.3
558
Normal
-0.3
724
Normal
-0.3
1022
Normal
-0.3
814
Normal
-0.3
1046
Normal
-0.3
474
Normal
-0.3
884
Normal
-0.3
982
Normal
-0.3
964
Normal
-0.3
698
Normal
-0.3
627
Tumor
-0.3
866
Normal
-0.3
1014
Normal
-0.4
912
Normal
-0.4
331
Tumor
-0.4
213
Tumor
-0.4
966
Normal
-0.4
697
Tumor
-0.4
113
Tumor
-0.4
615
Tumor
-0.4
518
Normal
-0.4
393
Tumor
-0.4
535
Tumor
-0.4
955
Tumor
-0.4
967
Tumor
-0.4
857
Tumor
-0.4
553
Tumor
-0.4
285
Tumor
-0.4
925
Tumor
-0.4
755
Tumor
-0.4
554
Normal
-0.4
963
Tumor
-0.4
861
Tumor
-0.5
461
Tumor
-0.5
863
Tumor
-0.5
536
Normal
-0.5
473
Tumor
-0.5
1015
Tumor
-0.5
515
Tumor
-0.5
367
Tumor
-0.5
978
Normal
-0.5
915
Tumor
-0.5
451
Tumor
-0.6
983
Tumor
-0.6
513
Tumor
-0.6
873
Tumor
-0.6
951
Tumor
-0.6
211
Tumor
-0.6
327
Tumor
-0.6
911
Tumor
-0.6
913
Tumor
-0.6
497
Tumor
-0.6
865
Tumor
-0.6
413
Tumor
-0.6
937
Tumor
-0.7
785
Tumor
-0.7
523
Tumor
-0.7
445
Tumor
-0.7
777
Tumor
-0.7
1041
Tumor
-0.8
743
Tumor
-0.8
737
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
