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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
327.6
nTPM
FANTOM5:
92.9
Scaled Tags Per Million
Pig:
56.5
nTPM
Allen mouse:
1.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
327.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 70.5
2188
Female, age 91, both hemispheres
75.9
2301
Female, age 85, both hemispheres
72.6
2090
Male, age 80, both hemispheres
72.3
1984
Male, age 76, both hemispheres
61.3
Dorsal cochlear nucleus nTPM: 80.1
2187
Female, age 91, both hemispheres
89.3
2058
Male, age 76, both hemispheres
81.8
2370
Male, age 61, both hemispheres
76.8
2378
Male, age 80, both hemispheres
76.4
2802
Male, age 74, right hemisphere
76.4
Dorsal tegmental nucleus nTPM: 90.4
2358
Male, age 61, both hemispheres
109.1
2083
Male, age 80, both hemispheres
91.6
1936
Male, age 76, left hemisphere
89.2
2326
Male, age 74, both hemispheres
71.9
Dorsolateral tegmental area nTPM: 102.6
2337
Male, age 61, both hemispheres
134.1
2141
Male, age 76, both hemispheres
103.9
2751
Female, age 85, both hemispheres
103.7
2654
Male, age 80, both hemispheres
97.2
2360
Male, age 74, both hemispheres
74.2
Kolliker-Fuse nucleus nTPM: 80.9
2315
Male, age 76, right hemisphere
109.0
2793
Female, age 91, left hemisphere
70.8
2163
Male, age 80, both hemispheres
62.8
Lateral lemniscal nuclei nTPM: 69.8
2746
Female, age 85, left hemisphere
93.4
2453
Male, age 74, right hemisphere
71.3
2036
Male, age 80, both hemispheres
65.4
2320
Female, age 91, left hemisphere
62.2
2169
Male, age 76, both hemispheres
56.7
Lateral parabrachial nucleus nTPM: 86.3
2790
Male, age 61, both hemispheres
92.5
2792
Male, age 76, both hemispheres
90.1
2013
Male, age 80, both hemispheres
83.6
2139
Female, age 85, right hemisphere
79.0
Lateral vestibular nucleus nTPM: 66.8
2311
Male, age 80, both hemispheres
70.7
2184
Male, age 76, both hemispheres
63.0
Locus coeruleus nTPM: 327.6
2014
Male, age 55, unknown
492.2
1980
Male, age 76, both hemispheres
370.1
2317
Female, age 72, unknown
341.1
2123
Female, age 91, both hemispheres
326.3
2788
Male, age 74, unknown
277.4
2720
Male, age 74, both hemispheres
272.9
2162
Male, age 80, both hemispheres
213.6
Medial parabrachial nucleus nTPM: 87.9
2170
Female, age 91, both hemispheres
117.8
2463
Female, age 85, right hemisphere
91.6
2786
Male, age 76, both hemispheres
83.4
2156
Male, age 61, both hemispheres
74.4
2854
Male, age 80, both hemispheres
72.1
Medial periolivary nuclei nTPM: 72.6
2081
Male, age 80, both hemispheres
82.9
2791
Male, age 74, right hemisphere
78.7
2171
Female, age 85, both hemispheres
70.8
2063
Male, age 76, both hemispheres
68.2
2458
Female, age 91, both hemispheres
62.2
Motor facial nucleus nTPM: 71.0
2126
Male, age 61, both hemispheres
85.0
2365
Male, age 74, right hemisphere
73.9
2795
Female, age 91, both hemispheres
70.6
2062
Male, age 76, both hemispheres
67.8
2327
Male, age 80, both hemispheres
65.6
2697
Female, age 85, both hemispheres
63.2
Motor trigeminal nucleus nTPM: 74.8
2335
Male, age 61, both hemispheres
83.5
2321
Female, age 91, both hemispheres
78.6
2560
Male, age 74, both hemispheres
74.6
2079
Male, age 80, both hemispheres
71.0
2309
Male, age 76, both hemispheres
66.1
Nuclei of the trapezoid body nTPM: 67.7
1983
Male, age 76, both hemispheres
70.2
2735
Female, age 85, both hemispheres
69.1
2368
Female, age 91, both hemispheres
67.0
2159
Male, age 61, both hemispheres
66.2
2166
Male, age 80, both hemispheres
66.2
Nucleus raphe magnus nTPM: 71.8
2051
Male, age 76, both hemispheres
97.1
2172
Female, age 85, both hemispheres
68.1
2455
Male, age 74, both hemispheres
68.1
2160
Male, age 61, both hemispheres
67.5
2459
Female, age 91, both hemispheres
67.5
2328
Male, age 80, both hemispheres
62.7
Paramedian reticular nucleus nTPM: 118.5
2313
Male, age 61, both hemispheres
176.4
2057
Male, age 80, both hemispheres
125.1
2050
Female, age 85, both hemispheres
90.8
2052
Male, age 76, both hemispheres
81.8
Pedunculopontine tegmental nucleus nTPM: 108.5
2334
Male, age 80, both hemispheres
153.8
2338
Male, age 61, both hemispheres
89.4
1921
Female, age 85, both hemispheres
82.4
Pontine nuclei nTPM: 73.9
2115
Male, age 80, left hemisphere
87.1
2727
Male, age 61, right hemisphere
79.9
2787
Female, age 85, both hemispheres
79.5
2109
Female, age 72, unknown
78.3
2319
Female, age 91, both hemispheres
69.6
1968
Male, age 76, left hemisphere
69.0
1863
Male, age 55, unknown
65.5
2454
Male, age 74, left hemisphere
62.7
Pontine raphe nucleus nTPM: 126.4
2853
Male, age 76, midline
162.4
2122
Female, age 85, midline
90.4
Posteroventral cochlear nucleus nTPM: 75.1
2070
Male, age 76, both hemispheres
85.3
2371
Male, age 61, both hemispheres
74.9
2135
Female, age 91, both hemispheres
74.1
2341
Male, age 80, both hemispheres
70.9
2752
Female, age 85, both hemispheres
70.1
Principal sensory trigeminal nucleus nTPM: 68.2
2367
Female, age 91, left hemisphere
71.8
2158
Male, age 61, both hemispheres
69.9
2008
Male, age 80, left hemisphere
69.5
2324
Male, age 76, both hemispheres
61.3
Reticular pontine nucleus, caudal nTPM: 68.8
2092
Male, age 76, both hemispheres
72.3
2559
Male, age 74, both hemispheres
71.9
2332
Male, age 80, right hemisphere
68.4
2457
Female, age 91, both hemispheres
62.8
Reticular pontine nucleus, oral nTPM: 83.9
1939
Male, age 80, both hemispheres
103.9
2012
Female, age 85, both hemispheres
93.8
2361
Male, age 74, both hemispheres
84.2
2167
Male, age 76, both hemispheres
82.9
2366
Female, age 91, both hemispheres
54.9
Reticulotegmental nucleus nTPM: 94.4
2325
Male, age 76, both hemispheres
114.4
2452
Male, age 74, both hemispheres
96.9
2333
Male, age 80, both hemispheres
89.7
2322
Female, age 91, both hemispheres
76.7
Spinal trigeminal nucleus, oral nTPM: 64.5
2164
Male, age 80, both hemispheres
74.1
2737
Female, age 85, both hemispheres
64.4
1978
Male, age 76, both hemispheres
55.1
Subcoeruleus area nTPM: 85.6
2323
Female, age 91, left hemisphere
109.6
2369
Female, age 85, left hemisphere
93.8
2451
Male, age 74, both hemispheres
89.8
1958
Male, age 80, both hemispheres
71.5
2089
Male, age 76, left hemisphere
63.1
Superior olive nTPM: 69.4
2364
Male, age 74, right hemisphere
76.4
2020
Male, age 76, both hemispheres
70.1
1875
Female, age 85, both hemispheres
69.0
2561
Female, age 91, both hemispheres
67.5
2329
Male, age 80, right hemisphere
63.8
Ventral periolivary nuclei nTPM: 66.5
2023
Male, age 76, both hemispheres
69.7
2130
Female, age 85, both hemispheres
67.1
2165
Male, age 80, both hemispheres
67.0
2794
Female, age 91, left hemisphere
62.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 89.0
2359
Male, age 61, both hemispheres
157.6
2840
Female, age 85, both hemispheres
89.7
2161
Male, age 80, both hemispheres
81.5
2456
Female, age 91, both hemispheres
70.0
2449
Male, age 74, both hemispheres
69.7
1959
Male, age 76, both hemispheres
65.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.5
Pig sample
Sample description
nTPM
Pons nTPM: 56.5
Samples: 4
Max nTPM: 77.2
Min nTPM: 41.6
Sample A
Female
52.1
Sample B
Female
55.2
Sample C
Male
77.2
Sample D
Male
41.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
