MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.9 nTPM
HPA Brain:237.6 nTPM
GTEx:89.9 nTPM
FANTOM5:120.0 Scaled Tags Per Million
Pig:70.4 nTPM
Mouse:49.7 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 237.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.5
2219 Male, age 76, both hemispheres 120.6
2666 Male, age 74, left hemisphere 117.5
2411 Female, age 72, unknown 110.6
2828 Female, age 72, unknown 94.3
1870 Female, age 42, unknown 84.0
2586 Male, age 75, left hemisphere 80.7
1833 Male, age 53, unknown 80.1
1830 Male, age 51, unknown 79.3
1827 Male, age 72, unknown 78.0
2019 Male, age 18, unknown 59.5
Dorsal raphe nucleus
nTPM: 170.8
2047 Male, age 72, unknown 267.7
2298 Female, age 72, unknown 209.0
2750 Male, age 76, both hemispheres 198.6
1828 Male, age 53, unknown 91.0
2016 Female, age 72, unknown 87.8
Inferior colliculus
nTPM: 49.8
1890 Male, age 53, unknown 60.0
2097 Female, age 72, unknown 55.3
2849 Male, age 72, unknown 42.7
1848 Female, age 42, unknown 41.2
Median raphe nucleus
nTPM: 237.6
2220 Male, age 76, midline 237.6
Periaquaductal grey, anterior
nTPM: 99.2
1795 Male, age 51, unknown 119.3
1947 Male, age 18, unknown 97.1
2502 Female, age 75, unknown 81.3
Periaquaductal grey, dorsal
nTPM: 84.9
2850 Male, age 76, both hemispheres 99.1
1840 Male, age 53, unknown 87.8
1831 Male, age 72, unknown 80.6
2464 Female, age 72, unknown 71.9
Periaquaductal grey, lateral
nTPM: 69.8
2053 Male, age 18, unknown 71.7
2140 Male, age 76, both hemispheres 70.2
2272 Male, age 74, both hemispheres 67.7
Pretectal area
nTPM: 73.3
2224 Female, age 72, unknown 112.8
2825 Male, age 18, unknown 95.8
1815 Male, age 53, unknown 74.0
2667 Female, age 75, unknown 73.1
2273 Male, age 74, both hemispheres 71.3
1816 Male, age 51, unknown 68.1
1944 Female, age 72, unknown 67.8
1817 Female, age 42, unknown 64.3
2007 Male, age 72, unknown 60.9
2407 Male, age 75, both hemispheres 60.3
2316 Male, age 76, right hemisphere 57.5
Red nucleus
nTPM: 68.8
2584 Male, age 75, left hemisphere 93.4
2725 Female, age 75, unknown 90.8
1821 Female, age 72, unknown 79.8
1904 Male, age 53, unknown 72.3
1865 Male, age 51, unknown 67.0
2503 Female, age 72, unknown 64.0
2588 Male, age 74, left hemisphere 63.8
2823 Male, age 76, right hemisphere 63.8
2769 Male, age 72, unknown 62.5
2227 Male, age 72, unknown 59.6
1954 Female, age 42, unknown 58.1
2785 Male, age 18, unknown 50.8
Substantia nigra
nTPM: 185.0
1916 Female, age 42, unknown 377.8
1851 Male, age 51, unknown 275.6
2241 Male, age 72, unknown 222.4
2699 Male, age 18, unknown 214.1
1941 Male, age 53, unknown 161.7
2409 Female, age 72, unknown 161.2
2665 Male, age 74, both hemispheres 136.7
2590 Female, age 75, unknown 105.7
1889 Female, age 72, unknown 99.1
2583 Male, age 75, right hemisphere 96.1
Superior colliculus
nTPM: 70.7
2668 Female, age 75, unknown 97.6
1796 Male, age 53, unknown 84.8
2261 Male, age 18, unknown 79.2
2664 Male, age 75, both hemispheres 78.0
2587 Male, age 74, left hemisphere 69.6
1913 Female, age 42, unknown 69.5
2087 Female, age 72, unknown 69.1
1995 Male, age 72, unknown 59.6
1839 Male, age 51, unknown 54.9
1895 Male, age 76, right hemisphere 45.0
Ventral tegmental area
nTPM: 177.0
1915 Female, age 42, unknown 221.6
2410 Female, age 72, unknown 201.9
2021 Male, age 53, unknown 198.7
2218 Male, age 76, both hemispheres 164.5
2223 Female, age 72, unknown 144.8
1942 Male, age 51, unknown 130.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 89.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.9
Samples: 139

Max nTPM: 285.6
Min nTPM: 40.5
Std nTPM: 43.6
Median nTPM: 75.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 285.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 260.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 213.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 194.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 189.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 187.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 181.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 175.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 173.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 170.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 164.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.0
FF:10158-103A5 76 years, female 120.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.4
Samples: 4

Max nTPM: 90.7
Min nTPM: 40.5
Sample A Female 89.0
Sample B Female 61.5
Sample C Male 90.7
Sample D Male 40.5
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 75.3
Min nTPM: 30.7
Sample A Female 75.3
Sample B Female 45.4
Sample C Male 32.5
Sample D Male 30.7
Periaqueductal gray
nTPM: 38.9
Samples: 3

Max nTPM: 53.7
Min nTPM: 30.9
Sample B Female 32.0
Sample C Male 53.7
Sample D Male 30.9
Superior colliculi
nTPM: 38.3
Samples: 4

Max nTPM: 50.6
Min nTPM: 27.1
Sample A Female 50.6
Sample B Female 44.6
Sample C Male 27.1
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.7
Samples: 4

Max nTPM: 53.8
Min nTPM: 42.4
Sample A Male 53.8
Sample B Male 51.0
Sample C Female 42.4
Sample D Female 51.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
72004459 Antisense, RP_050915_03_A02, Mouse strain C57BL/6J (56 days, male) 0.8
74357572 Antisense, RP_050915_03_A02, Mouse strain C57BL/6J (56 days, male) 0.7

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