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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL1A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
89.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1750.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1490.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1277.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
953.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
689.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
670.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
635.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
594.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
543.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
531.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
523.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
512.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
481.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
475.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
442.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
441.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
425.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
373.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
325.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
320.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
315.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
306.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
291.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
289.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
287.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
273.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
263.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
263.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
262.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
252.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
248.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
245.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
238.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
237.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
233.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
228.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
220.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
220.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
216.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
213.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
213.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
210.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
209.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
206.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
197.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
194.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
187.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
185.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
182.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
176.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
172.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
170.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
167.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
159.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
149.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
142.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
133.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
131.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
131.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
130.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
129.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
129.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
128.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
126.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
124.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
123.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
121.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
121.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
120.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
119.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
119.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
113.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
111.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
110.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
108.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
108.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
108.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
106.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
104.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
104.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
103.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
102.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
101.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
97.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
96.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
95.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
95.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
94.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
93.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
92.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
90.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
89.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
84.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
83.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
83.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
82.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
82.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
81.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
80.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
80.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
79.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
79.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
78.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
77.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
77.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
76.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
76.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
73.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
72.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
67.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
66.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
66.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
66.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
64.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
60.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
60.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
57.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
56.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
54.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
53.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
52.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
52.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
52.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
51.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
51.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
50.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
45.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
41.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
40.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL1A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
127.6
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6738.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1244.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
1013.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
737.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
675.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
624.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
617.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
613.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
553.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
551.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
523.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
436.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
435.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
433.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
414.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
412.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
397.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
396.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
351.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
345.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
336.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
318.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
317.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
314.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
314.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
284.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
278.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
273.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
249.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
248.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
236.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
232.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
216.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
215.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
206.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
205.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
200.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
193.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
190.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
189.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
182.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
182.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
180.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
174.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
173.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
154.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
144.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
135.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
134.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
131.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
130.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
127.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
126.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
124.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
124.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
122.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
119.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
118.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
109.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
108.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
102.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
99.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
96.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
94.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
88.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
85.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
85.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
78.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
75.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
75.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
75.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
73.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
73.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
72.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
71.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
70.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
69.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
63.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
61.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
60.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
57.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
56.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
56.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
52.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
2.1
917
Tumor
1.8
311
Tumor
1.7
975
Tumor
1.7
956
Normal
1.7
982
Normal
1.6
943
Tumor
1.5
1026
Normal
1.5
817
Tumor
1.5
185
Tumor
1.4
545
Tumor
1.4
1028
Normal
1.3
1014
Normal
1.3
952
Normal
1.3
192
Normal
1.3
1032
Normal
1.3
958
Normal
1.3
877
Tumor
1.2
881
Tumor
1.2
816
Normal
1.2
1044
Normal
1.2
1045
Tumor
1.2
818
Normal
1.2
916
Normal
1.2
984
Normal
1.2
492
Normal
1.2
857
Tumor
1.2
343
Tumor
1.2
536
Normal
1.1
355
Tumor
1.1
963
Tumor
1.1
525
Tumor
1.1
1042
Normal
1.0
421
Tumor
1.0
976
Normal
1.0
823
Tumor
1.0
924
Normal
1.0
922
Normal
1.0
386
Normal
1.0
918
Normal
1.0
444
Normal
0.9
964
Normal
0.9
363
Tumor
0.9
455
Tumor
0.9
852
Normal
0.9
563
Tumor
0.8
478
Normal
0.8
491
Tumor
0.8
375
Tumor
0.8
697
Tumor
0.8
968
Normal
0.8
461
Tumor
0.8
141
Tumor
0.7
813
Tumor
0.7
498
Normal
0.7
447
Tumor
0.7
814
Normal
0.7
744
Normal
0.7
1022
Normal
0.7
415
Tumor
0.7
383
Tumor
0.6
921
Tumor
0.6
672
Normal
0.6
516
Normal
0.6
716
Normal
0.6
538
Normal
0.6
874
Normal
0.6
785
Tumor
0.6
188
Normal
0.6
746
Normal
0.6
713
Tumor
0.6
297
Tumor
0.6
966
Normal
0.6
385
Tumor
0.6
866
Normal
0.5
211
Tumor
0.5
145
Tumor
0.5
938
Normal
0.5
223
Tumor
0.5
554
Normal
0.5
1015
Tumor
0.5
671
Tumor
0.5
224
Normal
0.5
912
Normal
0.5
954
Normal
0.5
195
Tumor
0.5
944
Normal
0.5
574
Normal
0.5
434
Normal
0.4
493
Tumor
0.4
1016
Normal
0.4
268
Normal
0.4
364
Normal
0.4
472
Normal
0.4
926
Normal
0.4
212
Normal
0.4
213
Tumor
0.4
978
Normal
0.4
474
Normal
0.4
923
Tumor
0.4
878
Normal
0.4
146
Normal
0.4
546
Normal
0.4
186
Normal
0.4
864
Normal
0.3
412
Normal
0.3
467
Tumor
0.3
416
Normal
0.3
535
Tumor
0.3
524
Normal
0.3
518
Normal
0.3
742
Normal
0.3
558
Normal
0.3
1046
Normal
0.3
126
Normal
0.3
515
Tumor
0.3
867
Tumor
0.2
696
Normal
0.2
728
Normal
0.2
884
Normal
0.2
723
Tumor
0.2
344
Normal
0.2
862
Normal
0.2
868
Normal
0.2
328
Normal
0.2
365
Tumor
0.2
214
Normal
0.2
354
Normal
0.2
721
Tumor
0.2
913
Tumor
0.2
627
Tumor
0.2
284
Normal
0.2
473
Tumor
0.2
395
Tumor
0.2
628
Normal
0.1
494
Normal
0.1
138
Normal
0.1
384
Normal
0.1
738
Normal
0.1
882
Normal
0.1
331
Tumor
0.1
352
Normal
0.1
312
Normal
0.1
196
Normal
0.1
187
Tumor
0.1
228
Normal
0.1
483
Tumor
0.1
427
Tumor
0.1
396
Normal
0.1
914
Normal
0.0
366
Normal
0.0
191
Tumor
0.0
327
Tumor
0.0
883
Tumor
0.0
277
Tumor
0.0
863
Tumor
0.0
124
Normal
0.0
686
Normal
0.0
616
Normal
0.0
362
Normal
0.0
715
Tumor
0.0
722
Normal
0.0
368
Normal
0.0
778
Normal
0.0
137
Tumor
0.0
824
Normal
0.0
272
Normal
-0.1
422
Normal
-0.1
925
Tumor
-0.1
858
Normal
-0.1
433
Tumor
-0.1
642
Normal
-0.1
564
Normal
-0.1
618
Normal
-0.1
981
Tumor
-0.1
136
Normal
-0.1
786
Normal
-0.1
714
Normal
-0.1
641
Tumor
-0.1
262
Normal
-0.2
388
Normal
-0.2
553
Tumor
-0.2
526
Normal
-0.2
615
Tumor
-0.2
983
Tumor
-0.2
424
Normal
-0.2
428
Normal
-0.2
172
Normal
-0.2
698
Normal
-0.3
394
Normal
-0.3
161
Tumor
-0.3
132
Normal
-0.3
142
Normal
-0.3
436
Normal
-0.3
497
Tumor
-0.3
353
Tumor
-0.3
528
Normal
-0.3
342
Normal
-0.3
572
Normal
-0.3
873
Tumor
-0.3
534
Normal
-0.3
464
Normal
-0.3
356
Normal
-0.3
162
Normal
-0.3
217
Tumor
-0.4
484
Normal
-0.4
332
Normal
-0.4
298
Normal
-0.4
488
Normal
-0.4
468
Normal
-0.4
636
Normal
-0.4
448
Normal
-0.4
953
Tumor
-0.4
514
Normal
-0.4
662
Normal
-0.4
664
Normal
-0.5
314
Normal
-0.5
446
Normal
-0.5
392
Normal
-0.5
278
Normal
-0.5
463
Tumor
-0.5
647
Tumor
-0.5
261
Tumor
-0.5
114
Normal
-0.5
148
Normal
-0.5
517
Tumor
-0.5
977
Tumor
-0.5
414
Normal
-0.5
341
Tumor
-0.5
456
Normal
-0.5
955
Tumor
-0.5
462
Normal
-0.6
286
Normal
-0.6
218
Normal
-0.6
727
Tumor
-0.6
617
Tumor
-0.6
666
Normal
-0.6
432
Normal
-0.6
861
Tumor
-0.6
413
Tumor
-0.6
127
Tumor
-0.6
568
Normal
-0.6
313
Tumor
-0.6
387
Tumor
-0.6
471
Tumor
-0.6
957
Tumor
-0.7
361
Tumor
-0.7
527
Tumor
-0.7
756
Normal
-0.7
258
Normal
-0.7
965
Tumor
-0.7
431
Tumor
-0.7
135
Tumor
-0.7
376
Normal
-0.7
1041
Tumor
-0.7
222
Normal
-0.7
915
Tumor
-0.7
466
Normal
-0.7
358
Normal
-0.8
111
Normal
-0.8
128
Normal
-0.8
815
Tumor
-0.8
695
Tumor
-0.8
232
Normal
-0.8
452
Normal
-0.8
685
Tumor
-0.8
1031
Tumor
-0.8
573
Tumor
-0.8
741
Tumor
-0.9
937
Tumor
-0.9
482
Normal
-0.9
648
Normal
-0.9
1027
Tumor
-0.9
426
Normal
-0.9
1043
Tumor
-1.0
777
Tumor
-1.0
221
Tumor
-1.0
737
Tumor
-1.0
851
Tumor
-1.0
513
Tumor
-1.0
367
Tumor
-1.0
743
Tumor
-1.0
1025
Tumor
-1.0
425
Tumor
-1.0
665
Tumor
-1.1
477
Tumor
-1.1
481
Tumor
-1.1
911
Tumor
-1.2
443
Tumor
-1.2
951
Tumor
-1.2
147
Tumor
-1.2
391
Tumor
-1.2
557
Tumor
-1.2
537
Tumor
-1.2
227
Tumor
-1.2
523
Tumor
-1.2
745
Tumor
-1.3
967
Tumor
-1.3
423
Tumor
-1.3
271
Tumor
-1.3
113
Tumor
-1.3
1013
Tumor
-1.3
755
Tumor
-1.4
533
Tumor
-1.4
393
Tumor
-1.4
724
Normal
-1.4
435
Tumor
-1.5
567
Tumor
-1.5
131
Tumor
-1.5
445
Tumor
-1.6
451
Tumor
-1.6
285
Tumor
-1.6
231
Tumor
-1.6
257
Tumor
-1.6
1021
Tumor
-1.6
865
Tumor
-1.7
125
Tumor
-1.7
171
Tumor
-1.7
465
Tumor
-1.7
487
Tumor
-1.7
357
Tumor
-1.7
351
Tumor
-1.7
411
Tumor
-1.7
635
Tumor
-1.8
267
Tumor
-1.8
663
Tumor
-1.9
571
Tumor
-1.9
661
Tumor
-2.1
112
Tumor
-2.2
123
Tumor
-2.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.