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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGALS3BP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
167.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1391.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
804.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
723.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
665.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
663.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
656.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
618.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
593.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
567.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
557.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
550.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
536.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
530.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
529.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
520.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
487.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
465.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
465.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
461.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
459.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
455.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
455.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
452.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
441.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
438.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
435.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
432.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
432.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
431.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
426.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
426.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
418.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
413.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
406.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
399.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
395.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
394.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
393.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
393.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
392.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
390.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
376.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
376.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
368.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
364.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
363.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
362.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
360.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
356.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
356.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
355.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
349.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
347.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
346.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
344.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
343.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
342.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
341.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
339.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
336.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
331.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
330.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
319.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
318.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
317.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
313.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
313.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
305.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
303.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
301.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
300.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
298.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
296.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
293.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
288.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
285.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
285.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
285.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
283.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
282.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
278.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
278.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
274.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
274.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
271.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
267.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
259.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
258.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
258.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
257.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
252.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
250.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
249.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
247.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
244.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
243.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
240.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
240.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
235.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
234.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
230.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
229.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
228.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
225.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
224.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
221.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
219.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
219.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
218.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
216.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
215.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
214.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
213.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
210.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
208.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
208.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
203.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
203.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
203.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
203.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
201.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
201.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
199.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
199.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
198.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
197.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
195.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
194.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
194.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
193.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
193.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
190.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
189.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
188.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
186.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
184.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
184.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
181.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
178.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
178.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
177.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
175.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
175.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
174.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
174.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
173.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
172.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
164.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
160.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
156.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
153.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
150.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
150.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
149.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
148.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
146.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
146.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
145.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
141.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
140.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
140.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
138.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
137.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
131.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
131.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
129.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
128.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
127.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
127.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
126.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
126.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
126.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
125.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
124.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
115.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
113.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
112.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
111.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
110.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
109.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
107.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
106.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
106.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
105.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
103.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
102.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
101.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
98.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
98.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
97.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
97.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
97.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
96.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
96.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
96.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
96.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
95.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
95.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
92.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
92.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
92.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
91.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
89.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
86.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
86.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
85.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
85.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
85.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
85.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
84.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
84.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
82.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
80.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
79.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
79.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
76.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
76.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
75.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
74.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
73.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
73.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
72.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
69.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
68.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
68.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
67.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
67.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
66.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
65.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
65.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
65.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
64.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
64.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
62.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
60.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
60.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
59.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
56.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
50.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
50.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
49.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
49.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
43.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
39.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
38.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LGALS3BP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
153.5
Number of samples
231
Samples
Sample
Description
TPM
DO45093
0 years, male, NA, stage:2, dead, 720 days
1049.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
916.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
649.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
577.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
545.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
525.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
514.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
506.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
466.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
455.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
452.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
441.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
422.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
420.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
409.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
408.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
400.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
390.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
385.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
376.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
374.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
370.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
355.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
345.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
340.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
336.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
335.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
331.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
331.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
328.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
316.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
303.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
299.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
297.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
288.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
273.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
261.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
260.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
259.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
256.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
255.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
255.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
254.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
254.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
254.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
251.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
250.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
250.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
247.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
247.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
243.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
242.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
241.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
239.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
238.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
237.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
234.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
231.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
226.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
224.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
222.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
219.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
212.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
212.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
211.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
209.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
208.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
208.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
202.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
198.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
193.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
187.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
184.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
183.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
181.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
175.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
174.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
174.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
173.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
171.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
169.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
168.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
167.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
166.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
162.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
159.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
155.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
154.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
151.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
149.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
145.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
145.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
144.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
143.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
143.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
142.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
142.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
141.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
137.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
136.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
134.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
134.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
132.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
127.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
124.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
123.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
122.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
120.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
120.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
120.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
119.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
119.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
119.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
118.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
118.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
114.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
111.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
110.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
110.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
109.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
108.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
106.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
106.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
98.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
98.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
98.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
95.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
95.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
92.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
92.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
91.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
90.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
90.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
86.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
82.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
82.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
80.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
80.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
77.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
75.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
74.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
73.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
72.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
71.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
69.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
68.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
67.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
67.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
67.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
66.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
56.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
56.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
55.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
54.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
54.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
52.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
46.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
41.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
1.6
881
Tumor
1.4
343
Tumor
1.3
447
Tumor
1.3
813
Tumor
1.3
471
Tumor
1.3
877
Tumor
1.2
975
Tumor
1.1
883
Tumor
0.9
1015
Tumor
0.9
641
Tumor
0.9
557
Tumor
0.9
983
Tumor
0.9
395
Tumor
0.8
451
Tumor
0.8
814
Normal
0.8
713
Tumor
0.8
311
Tumor
0.7
955
Tumor
0.7
817
Tumor
0.7
427
Tumor
0.7
455
Tumor
0.7
283
Tumor
0.7
661
Tumor
0.6
737
Tumor
0.6
221
Tumor
0.6
351
Tumor
0.6
525
Tumor
0.6
567
Tumor
0.6
344
Normal
0.5
218
Normal
0.5
393
Tumor
0.5
953
Tumor
0.5
331
Tumor
0.5
573
Tumor
0.5
355
Tumor
0.5
352
Normal
0.5
954
Normal
0.5
217
Tumor
0.5
1021
Tumor
0.5
461
Tumor
0.5
1044
Normal
0.5
214
Normal
0.5
415
Tumor
0.4
416
Normal
0.4
951
Tumor
0.4
533
Tumor
0.4
527
Tumor
0.4
113
Tumor
0.4
123
Tumor
0.4
857
Tumor
0.4
523
Tumor
0.4
524
Normal
0.4
965
Tumor
0.4
224
Normal
0.4
956
Normal
0.4
545
Tumor
0.4
284
Normal
0.4
664
Normal
0.3
262
Normal
0.3
364
Normal
0.3
285
Tumor
0.3
358
Normal
0.3
286
Normal
0.3
518
Normal
0.3
966
Normal
0.3
434
Normal
0.3
628
Normal
0.3
778
Normal
0.3
448
Normal
0.3
111
Normal
0.3
686
Normal
0.3
538
Normal
0.2
823
Tumor
0.2
744
Normal
0.2
313
Tumor
0.2
914
Normal
0.2
815
Tumor
0.2
432
Normal
0.2
742
Normal
0.2
195
Tumor
0.2
188
Normal
0.2
462
Normal
0.2
498
Normal
0.2
414
Normal
0.2
982
Normal
0.2
332
Normal
0.2
723
Tumor
0.2
258
Normal
0.2
231
Tumor
0.2
386
Normal
0.2
558
Normal
0.2
917
Tumor
0.2
376
Normal
0.2
662
Normal
0.2
271
Tumor
0.2
392
Normal
0.1
142
Normal
0.1
137
Tumor
0.1
452
Normal
0.1
257
Tumor
0.1
211
Tumor
0.1
297
Tumor
0.1
663
Tumor
0.1
146
Normal
0.1
357
Tumor
0.1
272
Normal
0.1
354
Normal
0.1
884
Normal
0.1
672
Normal
0.1
192
Normal
0.1
228
Normal
0.1
124
Normal
0.1
852
Normal
0.1
491
Tumor
0.1
916
Normal
0.1
212
Normal
0.1
186
Normal
0.1
666
Normal
0.1
268
Normal
0.1
536
Normal
0.1
443
Tumor
0.1
978
Normal
0.1
874
Normal
0.1
424
Normal
0.1
918
Normal
0.1
636
Normal
0.1
222
Normal
0.1
342
Normal
0.1
412
Normal
0.1
924
Normal
0.1
185
Tumor
0.1
516
Normal
0.0
396
Normal
0.0
862
Normal
0.0
394
Normal
0.0
126
Normal
0.0
921
Tumor
0.0
984
Normal
0.0
1042
Normal
0.0
428
Normal
0.0
422
Normal
0.0
526
Normal
0.0
957
Tumor
0.0
383
Tumor
0.0
724
Normal
0.0
958
Normal
0.0
568
Normal
0.0
278
Normal
0.0
1028
Normal
0.0
314
Normal
0.0
922
Normal
0.0
446
Normal
0.0
926
Normal
0.0
196
Normal
0.0
746
Normal
0.0
964
Normal
0.0
868
Normal
0.0
968
Normal
0.0
671
Tumor
0.0
618
Normal
0.0
478
Normal
0.0
362
Normal
0.0
363
Tumor
0.0
391
Tumor
0.0
472
Normal
0.0
1031
Tumor
0.0
1014
Normal
0.0
421
Tumor
0.0
135
Tumor
-0.1
722
Normal
-0.1
361
Tumor
-0.1
514
Normal
-0.1
528
Normal
-0.1
1046
Normal
-0.1
882
Normal
-0.1
444
Normal
-0.1
571
Tumor
-0.1
1026
Normal
-0.1
368
Normal
-0.1
436
Normal
-0.1
128
Normal
-0.1
384
Normal
-0.1
616
Normal
-0.1
698
Normal
-0.1
685
Tumor
-0.1
468
Normal
-0.1
1022
Normal
-0.1
866
Normal
-0.1
716
Normal
-0.1
952
Normal
-0.1
227
Tumor
-0.1
433
Tumor
-0.1
125
Tumor
-0.1
1016
Normal
-0.1
738
Normal
-0.1
756
Normal
-0.1
696
Normal
-0.1
858
Normal
-0.1
356
Normal
-0.1
312
Normal
-0.1
818
Normal
-0.1
132
Normal
-0.1
976
Normal
-0.1
114
Normal
-0.1
474
Normal
-0.1
467
Tumor
-0.1
648
Normal
-0.1
967
Tumor
-0.1
727
Tumor
-0.1
388
Normal
-0.2
223
Tumor
-0.2
136
Normal
-0.2
492
Normal
-0.2
878
Normal
-0.2
642
Normal
-0.2
482
Normal
-0.2
572
Normal
-0.2
1045
Tumor
-0.2
714
Normal
-0.2
515
Tumor
-0.2
864
Normal
-0.2
411
Tumor
-0.2
728
Normal
-0.2
298
Normal
-0.2
466
Normal
-0.2
574
Normal
-0.2
464
Normal
-0.2
456
Normal
-0.2
138
Normal
-0.2
213
Tumor
-0.2
824
Normal
-0.2
328
Normal
-0.2
938
Normal
-0.2
366
Normal
-0.2
564
Normal
-0.2
277
Tumor
-0.2
816
Normal
-0.2
172
Normal
-0.2
944
Normal
-0.2
385
Tumor
-0.2
554
Normal
-0.2
1032
Normal
-0.2
413
Tumor
-0.3
912
Normal
-0.3
925
Tumor
-0.3
777
Tumor
-0.3
477
Tumor
-0.3
913
Tumor
-0.3
743
Tumor
-0.3
375
Tumor
-0.3
943
Tumor
-0.3
923
Tumor
-0.3
494
Normal
-0.3
1013
Tumor
-0.3
261
Tumor
-0.3
232
Normal
-0.3
162
Normal
-0.4
145
Tumor
-0.4
148
Normal
-0.4
327
Tumor
-0.4
488
Normal
-0.4
981
Tumor
-0.4
426
Normal
-0.4
1027
Tumor
-0.4
147
Tumor
-0.4
873
Tumor
-0.4
497
Tumor
-0.4
484
Normal
-0.4
473
Tumor
-0.4
387
Tumor
-0.4
563
Tumor
-0.4
161
Tumor
-0.4
721
Tumor
-0.5
553
Tumor
-0.5
1025
Tumor
-0.5
861
Tumor
-0.5
534
Normal
-0.5
963
Tumor
-0.5
627
Tumor
-0.5
1041
Tumor
-0.6
546
Normal
-0.6
141
Tumor
-0.6
481
Tumor
-0.6
647
Tumor
-0.7
365
Tumor
-0.7
191
Tumor
-0.7
187
Tumor
-0.7
741
Tumor
-0.7
423
Tumor
-0.8
535
Tumor
-0.8
131
Tumor
-0.9
617
Tumor
-0.9
367
Tumor
-0.9
615
Tumor
-0.9
755
Tumor
-0.9
353
Tumor
-0.9
915
Tumor
-0.9
1043
Tumor
-0.9
865
Tumor
-0.9
867
Tumor
-0.9
267
Tumor
-0.9
487
Tumor
-0.9
977
Tumor
-1.0
112
Tumor
-1.0
537
Tumor
-1.0
127
Tumor
-1.0
665
Tumor
-1.0
463
Tumor
-1.1
513
Tumor
-1.1
341
Tumor
-1.1
493
Tumor
-1.1
786
Normal
-1.2
937
Tumor
-1.2
517
Tumor
-1.2
851
Tumor
-1.3
863
Tumor
-1.3
431
Tumor
-1.3
715
Tumor
-1.3
465
Tumor
-1.3
911
Tumor
-1.4
745
Tumor
-1.4
425
Tumor
-1.4
785
Tumor
-1.6
483
Tumor
-1.6
171
Tumor
-1.6
695
Tumor
-1.7
445
Tumor
-1.7
635
Tumor
-1.8
435
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.