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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED31 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED31 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
1.3
865
Tumor
1.1
743
Tumor
1.1
533
Tumor
1.1
545
Tumor
1.0
285
Tumor
1.0
391
Tumor
0.9
627
Tumor
0.9
1025
Tumor
0.9
965
Tumor
0.8
1041
Tumor
0.8
411
Tumor
0.8
817
Tumor
0.8
351
Tumor
0.7
211
Tumor
0.7
314
Normal
0.7
1031
Tumor
0.7
355
Tumor
0.7
278
Normal
0.7
525
Tumor
0.7
1032
Normal
0.7
815
Tumor
0.7
171
Tumor
0.7
283
Tumor
0.7
162
Normal
0.7
186
Normal
0.6
553
Tumor
0.6
123
Tumor
0.6
823
Tumor
0.6
957
Tumor
0.6
425
Tumor
0.6
741
Tumor
0.6
615
Tumor
0.5
537
Tumor
0.5
394
Normal
0.5
1042
Normal
0.5
277
Tumor
0.5
313
Tumor
0.5
851
Tumor
0.5
1021
Tumor
0.5
517
Tumor
0.5
573
Tumor
0.5
724
Normal
0.5
161
Tumor
0.5
715
Tumor
0.5
1022
Normal
0.5
523
Tumor
0.5
148
Normal
0.5
967
Tumor
0.5
431
Tumor
0.4
695
Tumor
0.4
616
Normal
0.4
567
Tumor
0.4
232
Normal
0.4
975
Tumor
0.4
1028
Normal
0.4
363
Tumor
0.4
1013
Tumor
0.4
737
Tumor
0.4
618
Normal
0.4
777
Tumor
0.4
557
Tumor
0.4
1027
Tumor
0.3
357
Tumor
0.3
227
Tumor
0.3
388
Normal
0.3
515
Tumor
0.3
535
Tumor
0.3
461
Tumor
0.3
312
Normal
0.3
393
Tumor
0.3
1026
Normal
0.3
427
Tumor
0.3
813
Tumor
0.3
685
Tumor
0.3
455
Tumor
0.3
386
Normal
0.3
172
Normal
0.3
188
Normal
0.3
185
Tumor
0.3
272
Normal
0.3
861
Tumor
0.3
527
Tumor
0.3
147
Tumor
0.3
642
Normal
0.3
385
Tumor
0.3
538
Normal
0.3
262
Normal
0.3
721
Tumor
0.3
814
Normal
0.3
392
Normal
0.3
877
Tumor
0.2
395
Tumor
0.2
298
Normal
0.2
534
Normal
0.2
447
Tumor
0.2
963
Tumor
0.2
435
Tumor
0.2
375
Tumor
0.2
727
Tumor
0.2
433
Tumor
0.2
536
Normal
0.2
636
Normal
0.2
628
Normal
0.2
977
Tumor
0.2
367
Tumor
0.2
223
Tumor
0.2
297
Tumor
0.2
635
Tumor
0.2
983
Tumor
0.2
713
Tumor
0.2
412
Normal
0.1
881
Tumor
0.1
873
Tumor
0.1
396
Normal
0.1
415
Tumor
0.1
482
Normal
0.1
1043
Tumor
0.1
981
Tumor
0.1
383
Tumor
0.1
883
Tumor
0.1
513
Tumor
0.1
463
Tumor
0.1
546
Normal
0.1
332
Normal
0.1
465
Tumor
0.1
364
Normal
0.1
1016
Normal
0.1
341
Tumor
0.1
1015
Tumor
0.1
744
Normal
0.1
365
Tumor
0.1
327
Tumor
0.1
524
Normal
0.0
857
Tumor
0.0
755
Tumor
0.0
416
Normal
0.0
421
Tumor
0.0
571
Tumor
0.0
641
Tumor
0.0
982
Normal
0.0
343
Tumor
0.0
467
Tumor
0.0
911
Tumor
0.0
413
Tumor
0.0
528
Normal
0.0
187
Tumor
0.0
443
Tumor
0.0
778
Normal
0.0
516
Normal
0.0
361
Tumor
0.0
697
Tumor
0.0
328
Normal
0.0
647
Tumor
0.0
258
Normal
0.0
978
Normal
0.0
785
Tumor
0.0
462
Normal
0.0
554
Normal
0.0
113
Tumor
0.0
445
Tumor
0.0
474
Normal
0.0
472
Normal
0.0
867
Tumor
-0.1
976
Normal
-0.1
742
Normal
-0.1
738
Normal
-0.1
696
Normal
-0.1
966
Normal
-0.1
617
Tumor
-0.1
937
Tumor
-0.1
448
Normal
-0.1
477
Tumor
-0.1
698
Normal
-0.1
112
Tumor
-0.1
342
Normal
-0.1
968
Normal
-0.1
125
Tumor
-0.1
451
Tumor
-0.1
1014
Normal
-0.1
387
Tumor
-0.1
526
Normal
-0.1
356
Normal
-0.2
714
Normal
-0.2
518
Normal
-0.2
127
Tumor
-0.2
686
Normal
-0.2
728
Normal
-0.2
1045
Tumor
-0.2
723
Tumor
-0.2
271
Tumor
-0.2
756
Normal
-0.2
913
Tumor
-0.2
212
Normal
-0.2
434
Normal
-0.2
331
Tumor
-0.2
914
Normal
-0.2
746
Normal
-0.2
426
Normal
-0.2
878
Normal
-0.2
231
Tumor
-0.2
882
Normal
-0.2
661
Tumor
-0.2
874
Normal
-0.2
951
Tumor
-0.2
984
Normal
-0.2
563
Tumor
-0.2
943
Tumor
-0.2
344
Normal
-0.3
574
Normal
-0.3
481
Tumor
-0.3
478
Normal
-0.3
964
Normal
-0.3
958
Normal
-0.3
786
Normal
-0.3
423
Tumor
-0.3
414
Normal
-0.3
284
Normal
-0.3
745
Tumor
-0.3
424
Normal
-0.3
362
Normal
-0.3
228
Normal
-0.3
816
Normal
-0.3
286
Normal
-0.3
444
Normal
-0.3
261
Tumor
-0.3
514
Normal
-0.3
716
Normal
-0.3
1046
Normal
-0.3
224
Normal
-0.4
863
Tumor
-0.4
124
Normal
-0.4
564
Normal
-0.4
353
Tumor
-0.4
366
Normal
-0.4
862
Normal
-0.4
384
Normal
-0.4
572
Normal
-0.4
722
Normal
-0.4
471
Tumor
-0.4
1044
Normal
-0.4
428
Normal
-0.4
376
Normal
-0.4
852
Normal
-0.4
368
Normal
-0.4
866
Normal
-0.4
884
Normal
-0.4
663
Tumor
-0.4
665
Tumor
-0.4
354
Normal
-0.4
352
Normal
-0.5
558
Normal
-0.5
944
Normal
-0.5
436
Normal
-0.5
953
Tumor
-0.5
568
Normal
-0.5
955
Tumor
-0.5
671
Tumor
-0.5
422
Normal
-0.5
111
Normal
-0.5
912
Normal
-0.5
126
Normal
-0.5
358
Normal
-0.5
956
Normal
-0.5
268
Normal
-0.6
864
Normal
-0.6
128
Normal
-0.6
473
Tumor
-0.6
858
Normal
-0.6
938
Normal
-0.6
868
Normal
-0.6
267
Tumor
-0.6
464
Normal
-0.6
452
Normal
-0.7
952
Normal
-0.7
311
Tumor
-0.7
456
Normal
-0.7
446
Normal
-0.7
466
Normal
-0.7
824
Normal
-0.7
114
Normal
-0.8
468
Normal
-0.8
666
Normal
-0.9
672
Normal
-0.9
662
Normal
-0.9
432
Normal
-0.9
954
Normal
-0.9
818
Normal
-1.0
664
Normal
-1.0
648
Normal
-1.2
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
