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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
40.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
37.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GBF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
0.9
123
Tumor
0.8
965
Tumor
0.7
231
Tumor
0.7
1027
Tumor
0.6
967
Tumor
0.6
271
Tumor
0.6
351
Tumor
0.6
745
Tumor
0.6
815
Tumor
0.6
285
Tumor
0.5
257
Tumor
0.5
1021
Tumor
0.5
937
Tumor
0.5
921
Tumor
0.5
1025
Tumor
0.4
387
Tumor
0.4
391
Tumor
0.4
147
Tumor
0.4
113
Tumor
0.4
617
Tumor
0.4
327
Tumor
0.4
953
Tumor
0.4
635
Tumor
0.4
983
Tumor
0.4
127
Tumor
0.4
367
Tumor
0.4
171
Tumor
0.4
755
Tumor
0.4
413
Tumor
0.4
463
Tumor
0.4
537
Tumor
0.4
523
Tumor
0.4
727
Tumor
0.3
331
Tumor
0.3
353
Tumor
0.3
661
Tumor
0.3
724
Normal
0.3
125
Tumor
0.3
261
Tumor
0.3
435
Tumor
0.3
223
Tumor
0.3
385
Tumor
0.3
451
Tumor
0.3
221
Tumor
0.3
695
Tumor
0.3
951
Tumor
0.3
445
Tumor
0.3
341
Tumor
0.3
881
Tumor
0.3
297
Tumor
0.2
145
Tumor
0.2
567
Tumor
0.2
741
Tumor
0.2
311
Tumor
0.2
861
Tumor
0.2
743
Tumor
0.2
443
Tumor
0.2
421
Tumor
0.2
981
Tumor
0.2
135
Tumor
0.2
213
Tumor
0.2
477
Tumor
0.2
357
Tumor
0.2
467
Tumor
0.2
911
Tumor
0.2
187
Tumor
0.2
925
Tumor
0.2
553
Tumor
0.2
517
Tumor
0.2
447
Tumor
0.2
641
Tumor
0.2
814
Normal
0.2
131
Tumor
0.2
867
Tumor
0.2
737
Tumor
0.2
277
Tumor
0.1
851
Tumor
0.1
647
Tumor
0.1
393
Tumor
0.1
883
Tumor
0.1
817
Tumor
0.1
431
Tumor
0.1
813
Tumor
0.1
533
Tumor
0.1
665
Tumor
0.1
721
Tumor
0.1
195
Tumor
0.1
262
Normal
0.1
455
Tumor
0.1
1043
Tumor
0.1
363
Tumor
0.1
557
Tumor
0.1
433
Tumor
0.1
923
Tumor
0.1
191
Tumor
0.1
917
Tumor
0.1
258
Normal
0.1
114
Normal
0.1
267
Tumor
0.1
361
Tumor
0.1
957
Tumor
0.1
713
Tumor
0.1
434
Normal
0.1
473
Tumor
0.1
471
Tumor
0.0
283
Tumor
0.0
332
Normal
0.0
446
Normal
0.0
286
Normal
0.0
136
Normal
0.0
111
Normal
0.0
697
Tumor
0.0
873
Tumor
0.0
272
Normal
0.0
481
Tumor
0.0
232
Normal
0.0
535
Tumor
0.0
298
Normal
0.0
955
Tumor
0.0
217
Tumor
0.0
368
Normal
0.0
124
Normal
0.0
497
Tumor
0.0
664
Normal
0.0
411
Tumor
0.0
662
Normal
0.0
132
Normal
0.0
648
Normal
0.0
343
Tumor
0.0
268
Normal
0.0
128
Normal
0.0
313
Tumor
0.0
314
Normal
0.0
312
Normal
0.0
278
Normal
0.0
188
Normal
0.0
926
Normal
0.0
1026
Normal
0.0
666
Normal
0.0
914
Normal
0.0
138
Normal
0.0
218
Normal
0.0
527
Tumor
0.0
436
Normal
0.0
915
Tumor
0.0
456
Normal
0.0
952
Normal
0.0
185
Tumor
0.0
386
Normal
0.0
573
Tumor
0.0
742
Normal
0.0
786
Normal
0.0
877
Tumor
0.0
355
Tumor
0.0
518
Normal
0.0
142
Normal
0.0
528
Normal
0.0
416
Normal
0.0
465
Tumor
0.0
728
Normal
-0.1
395
Tumor
-0.1
571
Tumor
-0.1
126
Normal
-0.1
464
Normal
-0.1
444
Normal
-0.1
864
Normal
-0.1
968
Normal
-0.1
868
Normal
-0.1
862
Normal
-0.1
696
Normal
-0.1
362
Normal
-0.1
978
Normal
-0.1
1016
Normal
-0.1
671
Tumor
-0.1
422
Normal
-0.1
966
Normal
-0.1
564
Normal
-0.1
558
Normal
-0.1
426
Normal
-0.1
392
Normal
-0.1
212
Normal
-0.1
214
Normal
-0.1
715
Tumor
-0.1
493
Tumor
-0.1
866
Normal
-0.1
568
Normal
-0.1
328
Normal
-0.1
778
Normal
-0.1
146
Normal
-0.1
526
Normal
-0.1
912
Normal
-0.1
414
Normal
-0.1
356
Normal
-0.1
963
Tumor
-0.1
563
Tumor
-0.1
738
Normal
-0.1
722
Normal
-0.1
852
Normal
-0.1
1044
Normal
-0.1
186
Normal
-0.1
1031
Tumor
-0.1
964
Normal
-0.1
112
Tumor
-0.1
462
Normal
-0.1
672
Normal
-0.1
428
Normal
-0.1
977
Tumor
-0.1
452
Normal
-0.1
396
Normal
-0.1
714
Normal
-0.1
352
Normal
-0.1
474
Normal
-0.1
358
Normal
-0.1
816
Normal
-0.1
468
Normal
-0.1
211
Tumor
-0.1
425
Tumor
-0.1
148
Normal
-0.1
1015
Tumor
-0.1
615
Tumor
-0.1
514
Normal
-0.1
756
Normal
-0.1
874
Normal
-0.1
746
Normal
-0.1
636
Normal
-0.1
884
Normal
-0.1
536
Normal
-0.1
975
Tumor
-0.1
344
Normal
-0.1
1014
Normal
-0.1
466
Normal
-0.1
1042
Normal
-0.1
574
Normal
-0.1
824
Normal
-0.1
192
Normal
-0.1
1046
Normal
-0.1
545
Tumor
-0.1
918
Normal
-0.1
376
Normal
-0.1
424
Normal
-0.1
785
Tumor
-0.1
284
Normal
-0.1
222
Normal
-0.1
472
Normal
-0.1
482
Normal
-0.1
642
Normal
-0.1
432
Normal
-0.1
865
Tumor
-0.1
616
Normal
-0.1
956
Normal
-0.1
916
Normal
-0.1
394
Normal
-0.1
487
Tumor
-0.1
228
Normal
-0.1
227
Tumor
-0.1
448
Normal
-0.1
924
Normal
-0.1
976
Normal
-0.1
858
Normal
-0.1
686
Normal
-0.1
141
Tumor
-0.1
943
Tumor
-0.1
1022
Normal
-0.1
572
Normal
-0.1
982
Normal
-0.2
224
Normal
-0.2
1028
Normal
-0.2
618
Normal
-0.2
383
Tumor
-0.2
162
Normal
-0.2
492
Normal
-0.2
388
Normal
-0.2
944
Normal
-0.2
354
Normal
-0.2
534
Normal
-0.2
196
Normal
-0.2
882
Normal
-0.2
922
Normal
-0.2
415
Tumor
-0.2
823
Tumor
-0.2
958
Normal
-0.2
478
Normal
-0.2
524
Normal
-0.2
938
Normal
-0.2
384
Normal
-0.2
698
Normal
-0.2
494
Normal
-0.2
364
Normal
-0.2
984
Normal
-0.2
628
Normal
-0.2
913
Tumor
-0.2
488
Normal
-0.2
172
Normal
-0.2
723
Tumor
-0.2
137
Tumor
-0.2
818
Normal
-0.2
161
Tumor
-0.2
412
Normal
-0.2
525
Tumor
-0.2
1045
Tumor
-0.2
554
Normal
-0.2
491
Tumor
-0.2
878
Normal
-0.2
427
Tumor
-0.2
954
Normal
-0.2
366
Normal
-0.2
663
Tumor
-0.2
1032
Normal
-0.2
484
Normal
-0.2
863
Tumor
-0.2
483
Tumor
-0.2
546
Normal
-0.2
744
Normal
-0.2
342
Normal
-0.2
716
Normal
-0.3
375
Tumor
-0.3
498
Normal
-0.3
516
Normal
-0.3
1041
Tumor
-0.3
461
Tumor
-0.3
538
Normal
-0.3
857
Tumor
-0.3
777
Tumor
-0.4
423
Tumor
-0.4
515
Tumor
-0.4
1013
Tumor
-0.4
365
Tumor
-0.4
627
Tumor
-0.5
513
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
