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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LZTS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
84.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
50.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LZTS2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
0.8
863
Tumor
0.7
881
Tumor
0.7
721
Tumor
0.6
363
Tumor
0.6
385
Tumor
0.6
498
Normal
0.6
937
Tumor
0.6
877
Tumor
0.6
917
Tumor
0.6
967
Tumor
0.6
921
Tumor
0.5
343
Tumor
0.5
297
Tumor
0.5
272
Normal
0.5
524
Normal
0.5
1025
Tumor
0.5
227
Tumor
0.5
716
Normal
0.5
516
Normal
0.5
331
Tumor
0.5
428
Normal
0.5
355
Tumor
0.5
192
Normal
0.5
868
Normal
0.4
391
Tumor
0.4
258
Normal
0.4
545
Tumor
0.4
817
Tumor
0.4
311
Tumor
0.4
1041
Tumor
0.4
866
Normal
0.4
686
Normal
0.4
523
Tumor
0.4
268
Normal
0.4
221
Tumor
0.4
536
Normal
0.4
344
Normal
0.4
538
Normal
0.4
424
Normal
0.4
874
Normal
0.4
447
Tumor
0.4
535
Tumor
0.4
277
Tumor
0.4
387
Tumor
0.4
661
Tumor
0.4
414
Normal
0.4
368
Normal
0.4
473
Tumor
0.4
957
Tumor
0.4
483
Tumor
0.4
444
Normal
0.4
714
Normal
0.4
493
Tumor
0.3
434
Normal
0.3
713
Tumor
0.3
478
Normal
0.3
953
Tumor
0.3
492
Normal
0.3
956
Normal
0.3
958
Normal
0.3
923
Tumor
0.3
472
Normal
0.3
641
Tumor
0.3
147
Tumor
0.3
695
Tumor
0.3
312
Normal
0.3
951
Tumor
0.3
415
Tumor
0.3
488
Normal
0.3
514
Normal
0.3
386
Normal
0.3
823
Tumor
0.3
271
Tumor
0.2
351
Tumor
0.2
313
Tumor
0.2
384
Normal
0.2
938
Normal
0.2
211
Tumor
0.2
396
Normal
0.2
353
Tumor
0.2
873
Tumor
0.2
1045
Tumor
0.2
525
Tumor
0.2
715
Tumor
0.2
965
Tumor
0.2
388
Normal
0.2
671
Tumor
0.2
526
Normal
0.2
482
Normal
0.2
354
Normal
0.2
362
Normal
0.2
393
Tumor
0.2
1031
Tumor
0.2
697
Tumor
0.2
185
Tumor
0.2
224
Normal
0.2
376
Normal
0.2
537
Tumor
0.2
432
Normal
0.2
462
Normal
0.2
394
Normal
0.2
976
Normal
0.2
365
Tumor
0.2
142
Normal
0.2
342
Normal
0.2
867
Tumor
0.2
358
Normal
0.2
696
Normal
0.2
916
Normal
0.2
446
Normal
0.2
518
Normal
0.2
484
Normal
0.2
943
Tumor
0.2
862
Normal
0.2
214
Normal
0.2
443
Tumor
0.2
925
Tumor
0.2
366
Normal
0.2
426
Normal
0.2
352
Normal
0.2
436
Normal
0.1
124
Normal
0.1
815
Tumor
0.1
146
Normal
0.1
635
Tumor
0.1
126
Normal
0.1
284
Normal
0.1
327
Tumor
0.1
497
Tumor
0.1
964
Normal
0.1
455
Tumor
0.1
212
Normal
0.1
228
Normal
0.1
332
Normal
0.1
954
Normal
0.1
412
Normal
0.1
125
Tumor
0.1
851
Tumor
0.1
262
Normal
0.1
756
Normal
0.1
814
Normal
0.1
422
Normal
0.1
217
Tumor
0.1
1044
Normal
0.1
392
Normal
0.1
975
Tumor
0.1
298
Normal
0.1
223
Tumor
0.1
494
Normal
0.1
341
Tumor
0.1
665
Tumor
0.1
663
Tumor
0.1
924
Normal
0.1
395
Tumor
0.1
963
Tumor
0.1
567
Tumor
0.1
328
Normal
0.1
261
Tumor
0.1
191
Tumor
0.1
1028
Normal
0.1
557
Tumor
0.1
983
Tumor
0.1
195
Tumor
0.1
474
Normal
0.1
314
Normal
0.0
984
Normal
0.0
111
Normal
0.0
883
Tumor
0.0
464
Normal
0.0
944
Normal
0.0
231
Tumor
0.0
431
Tumor
0.0
465
Tumor
0.0
662
Normal
0.0
471
Tumor
0.0
481
Tumor
0.0
413
Tumor
0.0
196
Normal
0.0
364
Normal
0.0
722
Normal
0.0
968
Normal
0.0
864
Normal
0.0
786
Normal
0.0
456
Normal
0.0
375
Tumor
0.0
188
Normal
0.0
383
Tumor
0.0
1014
Normal
0.0
131
Tumor
0.0
1046
Normal
0.0
278
Normal
0.0
187
Tumor
0.0
427
Tumor
0.0
517
Tumor
0.0
882
Normal
0.0
286
Normal
0.0
858
Normal
0.0
491
Tumor
0.0
218
Normal
0.0
672
Normal
0.0
448
Normal
0.0
232
Normal
0.0
461
Tumor
0.0
743
Tumor
0.0
267
Tumor
0.0
952
Normal
0.0
421
Tumor
0.0
468
Normal
0.0
445
Tumor
0.0
466
Normal
0.0
222
Normal
0.0
515
Tumor
0.0
647
Tumor
0.0
425
Tumor
0.0
285
Tumor
0.0
778
Normal
0.0
477
Tumor
0.0
568
Normal
0.0
574
Normal
0.0
911
Tumor
0.0
213
Tumor
0.0
513
Tumor
-0.1
132
Normal
-0.1
452
Normal
-0.1
922
Normal
-0.1
546
Normal
-0.1
161
Tumor
-0.1
357
Tumor
-0.1
186
Normal
-0.1
978
Normal
-0.1
666
Normal
-0.1
745
Tumor
-0.1
416
Normal
-0.1
982
Normal
-0.1
915
Tumor
-0.1
435
Tumor
-0.1
145
Tumor
-0.1
617
Tumor
-0.1
1032
Normal
-0.1
1021
Tumor
-0.1
367
Tumor
-0.1
554
Normal
-0.1
564
Normal
-0.1
356
Normal
-0.1
1016
Normal
-0.1
642
Normal
-0.1
162
Normal
-0.1
648
Normal
-0.1
137
Tumor
-0.1
861
Tumor
-0.1
912
Normal
-0.1
913
Tumor
-0.1
824
Normal
-0.1
138
Normal
-0.1
433
Tumor
-0.1
785
Tumor
-0.1
755
Tumor
-0.1
136
Normal
-0.1
572
Normal
-0.1
467
Tumor
-0.1
813
Tumor
-0.1
141
Tumor
-0.1
884
Normal
-0.1
411
Tumor
-0.1
128
Normal
-0.2
918
Normal
-0.2
171
Tumor
-0.2
818
Normal
-0.2
926
Normal
-0.2
573
Tumor
-0.2
451
Tumor
-0.2
1042
Normal
-0.2
423
Tumor
-0.2
878
Normal
-0.2
361
Tumor
-0.2
534
Normal
-0.2
618
Normal
-0.2
558
Normal
-0.2
1026
Normal
-0.2
955
Tumor
-0.2
914
Normal
-0.2
127
Tumor
-0.2
114
Normal
-0.2
533
Tumor
-0.2
257
Tumor
-0.2
1043
Tumor
-0.2
865
Tumor
-0.2
636
Normal
-0.2
966
Normal
-0.2
664
Normal
-0.2
527
Tumor
-0.2
148
Normal
-0.2
1022
Normal
-0.2
698
Normal
-0.2
563
Tumor
-0.2
283
Tumor
-0.3
487
Tumor
-0.3
744
Normal
-0.3
172
Normal
-0.3
724
Normal
-0.3
981
Tumor
-0.3
723
Tumor
-0.3
135
Tumor
-0.3
746
Normal
-0.3
1015
Tumor
-0.3
571
Tumor
-0.3
852
Normal
-0.3
528
Normal
-0.3
123
Tumor
-0.3
627
Tumor
-0.3
615
Tumor
-0.3
977
Tumor
-0.3
816
Normal
-0.3
857
Tumor
-0.3
742
Normal
-0.4
113
Tumor
-0.4
1027
Tumor
-0.4
728
Normal
-0.4
685
Tumor
-0.4
463
Tumor
-0.4
738
Normal
-0.4
628
Normal
-0.4
777
Tumor
-0.4
737
Tumor
-0.5
112
Tumor
-0.5
727
Tumor
-0.5
616
Normal
-0.5
741
Tumor
-0.6
1013
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
