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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BAG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
193.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
158.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
129.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
114.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
111.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
101.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
94.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
93.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
93.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
92.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
92.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
91.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
89.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
89.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
89.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
88.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
88.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
87.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
86.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
85.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
85.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
85.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
84.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
82.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
82.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
82.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
78.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
77.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
76.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
74.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
74.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
73.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
72.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
71.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
71.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
71.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
70.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
68.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
68.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
67.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
66.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
65.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
65.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
65.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
64.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
64.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
63.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
63.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
63.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
62.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
61.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
61.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
60.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
60.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
60.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
60.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
60.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
59.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
59.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
59.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
59.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
58.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
58.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
57.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
57.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
57.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
57.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
57.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
57.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
56.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
56.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
56.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
55.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
55.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
55.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
55.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
54.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
53.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
52.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
52.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
52.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
51.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
50.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
50.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
50.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
50.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
50.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
49.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
48.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
48.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
47.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
47.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
46.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
46.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
42.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
40.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
39.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
37.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
27.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BAG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
921
Tumor
1.0
1031
Tumor
0.9
131
Tumor
0.8
1027
Tumor
0.8
553
Tumor
0.8
1025
Tumor
0.7
271
Tumor
0.7
743
Tumor
0.6
695
Tumor
0.6
917
Tumor
0.6
285
Tumor
0.6
227
Tumor
0.5
257
Tumor
0.5
737
Tumor
0.5
698
Normal
0.5
777
Tumor
0.5
863
Tumor
0.5
545
Tumor
0.5
487
Tumor
0.5
517
Tumor
0.5
365
Tumor
0.5
448
Normal
0.5
958
Normal
0.4
481
Tumor
0.4
483
Tumor
0.4
484
Normal
0.4
785
Tumor
0.4
488
Normal
0.4
1042
Normal
0.4
536
Normal
0.4
924
Normal
0.4
1046
Normal
0.4
954
Normal
0.4
461
Tumor
0.4
498
Normal
0.4
1043
Tumor
0.3
1032
Normal
0.3
492
Normal
0.3
1044
Normal
0.3
755
Tumor
0.3
1022
Normal
0.3
1041
Tumor
0.3
515
Tumor
0.3
916
Normal
0.3
714
Normal
0.3
741
Tumor
0.3
696
Normal
0.3
746
Normal
0.3
727
Tumor
0.3
938
Normal
0.3
327
Tumor
0.3
966
Normal
0.3
982
Normal
0.3
228
Normal
0.3
516
Normal
0.3
944
Normal
0.3
862
Normal
0.3
881
Tumor
0.3
546
Normal
0.3
1021
Tumor
0.3
912
Normal
0.2
976
Normal
0.2
868
Normal
0.2
494
Normal
0.2
411
Tumor
0.2
473
Tumor
0.2
716
Normal
0.2
922
Normal
0.2
923
Tumor
0.2
147
Tumor
0.2
977
Tumor
0.2
328
Normal
0.2
615
Tumor
0.2
968
Normal
0.2
412
Normal
0.2
538
Normal
0.2
728
Normal
0.2
1026
Normal
0.2
878
Normal
0.2
858
Normal
0.2
472
Normal
0.2
478
Normal
0.2
1014
Normal
0.2
964
Normal
0.2
524
Normal
0.2
444
Normal
0.2
963
Tumor
0.2
356
Normal
0.2
514
Normal
0.2
955
Tumor
0.2
172
Normal
0.2
425
Tumor
0.2
212
Normal
0.2
463
Tumor
0.2
436
Normal
0.2
1016
Normal
0.2
952
Normal
0.2
953
Tumor
0.2
416
Normal
0.2
865
Tumor
0.2
162
Normal
0.2
882
Normal
0.2
1028
Normal
0.2
376
Normal
0.2
877
Tumor
0.2
482
Normal
0.2
534
Normal
0.2
394
Normal
0.1
722
Normal
0.1
1045
Tumor
0.1
627
Tumor
0.1
554
Normal
0.1
915
Tumor
0.1
361
Tumor
0.1
686
Normal
0.1
984
Normal
0.1
867
Tumor
0.1
222
Normal
0.1
128
Normal
0.1
778
Normal
0.1
148
Normal
0.1
918
Normal
0.1
491
Tumor
0.1
817
Tumor
0.1
874
Normal
0.1
464
Normal
0.1
744
Normal
0.1
284
Normal
0.1
756
Normal
0.1
366
Normal
0.1
518
Normal
0.1
471
Tumor
0.1
914
Normal
0.1
742
Normal
0.1
447
Tumor
0.1
142
Normal
0.1
956
Normal
0.1
852
Normal
0.1
466
Normal
0.1
738
Normal
0.1
943
Tumor
0.1
232
Normal
0.1
195
Tumor
0.1
362
Normal
0.1
926
Normal
0.1
364
Normal
0.1
141
Tumor
0.1
221
Tumor
0.1
537
Tumor
0.1
573
Tumor
0.1
196
Normal
0.1
523
Tumor
0.1
864
Normal
0.1
355
Tumor
0.1
456
Normal
0.1
186
Normal
0.1
978
Normal
0.1
124
Normal
0.1
363
Tumor
0.1
1013
Tumor
0.1
171
Tumor
0.1
132
Normal
0.1
386
Normal
0.1
468
Normal
0.1
268
Normal
0.1
816
Normal
0.1
823
Tumor
0.1
415
Tumor
0.1
111
Normal
0.1
138
Normal
0.1
526
Normal
0.1
146
Normal
0.1
723
Tumor
0.1
981
Tumor
0.1
224
Normal
0.1
298
Normal
0.1
851
Tumor
0.0
188
Normal
0.0
824
Normal
0.0
975
Tumor
0.0
126
Normal
0.0
462
Normal
0.0
192
Normal
0.0
818
Normal
0.0
866
Normal
0.0
332
Normal
0.0
286
Normal
0.0
384
Normal
0.0
114
Normal
0.0
428
Normal
0.0
786
Normal
0.0
123
Tumor
0.0
1015
Tumor
0.0
342
Normal
0.0
713
Tumor
0.0
427
Tumor
0.0
277
Tumor
0.0
344
Normal
0.0
715
Tumor
0.0
497
Tumor
0.0
136
Normal
0.0
455
Tumor
0.0
392
Normal
0.0
884
Normal
0.0
214
Normal
0.0
137
Tumor
0.0
414
Normal
0.0
857
Tumor
0.0
375
Tumor
0.0
528
Normal
0.0
368
Normal
0.0
661
Tumor
0.0
297
Tumor
0.0
465
Tumor
0.0
911
Tumor
0.0
564
Normal
0.0
474
Normal
0.0
424
Normal
0.0
745
Tumor
-0.1
913
Tumor
-0.1
957
Tumor
-0.1
272
Normal
-0.1
572
Normal
-0.1
432
Normal
-0.1
616
Normal
-0.1
314
Normal
-0.1
452
Normal
-0.1
262
Normal
-0.1
574
Normal
-0.1
213
Tumor
-0.1
618
Normal
-0.1
278
Normal
-0.1
258
Normal
-0.1
965
Tumor
-0.1
568
Normal
-0.1
388
Normal
-0.1
446
Normal
-0.1
513
Tumor
-0.1
558
Normal
-0.1
187
Tumor
-0.1
628
Normal
-0.1
422
Normal
-0.1
127
Tumor
-0.1
467
Tumor
-0.2
358
Normal
-0.2
393
Tumor
-0.2
535
Tumor
-0.2
352
Normal
-0.2
434
Normal
-0.2
426
Normal
-0.2
635
Tumor
-0.2
125
Tumor
-0.2
861
Tumor
-0.2
396
Normal
-0.2
642
Normal
-0.2
636
Normal
-0.2
354
Normal
-0.2
873
Tumor
-0.2
617
Tumor
-0.2
185
Tumor
-0.2
527
Tumor
-0.2
967
Tumor
-0.2
353
Tumor
-0.2
312
Normal
-0.2
697
Tumor
-0.2
721
Tumor
-0.3
383
Tumor
-0.3
451
Tumor
-0.3
493
Tumor
-0.3
283
Tumor
-0.3
217
Tumor
-0.3
145
Tumor
-0.3
218
Normal
-0.3
814
Normal
-0.3
211
Tumor
-0.3
223
Tumor
-0.3
641
Tumor
-0.3
261
Tumor
-0.3
433
Tumor
-0.3
664
Normal
-0.3
571
Tumor
-0.3
431
Tumor
-0.3
937
Tumor
-0.3
112
Tumor
-0.3
267
Tumor
-0.3
951
Tumor
-0.3
563
Tumor
-0.3
662
Normal
-0.3
421
Tumor
-0.4
343
Tumor
-0.4
423
Tumor
-0.4
191
Tumor
-0.4
313
Tumor
-0.4
813
Tumor
-0.4
161
Tumor
-0.4
648
Normal
-0.4
385
Tumor
-0.4
672
Normal
-0.4
666
Normal
-0.4
311
Tumor
-0.4
445
Tumor
-0.5
477
Tumor
-0.5
983
Tumor
-0.5
557
Tumor
-0.5
135
Tumor
-0.5
357
Tumor
-0.5
724
Normal
-0.5
331
Tumor
-0.5
883
Tumor
-0.6
533
Tumor
-0.6
413
Tumor
-0.6
685
Tumor
-0.6
113
Tumor
-0.6
647
Tumor
-0.6
341
Tumor
-0.6
351
Tumor
-0.6
525
Tumor
-0.6
231
Tumor
-0.6
435
Tumor
-0.7
815
Tumor
-0.7
395
Tumor
-0.7
925
Tumor
-0.7
443
Tumor
-0.7
663
Tumor
-0.7
665
Tumor
-0.8
671
Tumor
-0.8
391
Tumor
-0.8
367
Tumor
-0.8
387
Tumor
-1.0
567
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
