MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:54.2 nTPM
GTEx:15.2 nTPM
FANTOM5:237.1 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:17.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
1870 Female, age 42, unknown 64.3
1830 Male, age 51, unknown 62.4
1833 Male, age 53, unknown 58.2
2411 Female, age 72, unknown 55.4
2019 Male, age 18, unknown 55.2
2219 Male, age 76, both hemispheres 48.7
2828 Female, age 72, unknown 48.5
2666 Male, age 74, left hemisphere 42.3
1827 Male, age 72, unknown 40.3
2586 Male, age 75, left hemisphere 36.9
Dorsal raphe nucleus
nTPM: 42.2
2750 Male, age 76, both hemispheres 56.4
2016 Female, age 72, unknown 49.1
1828 Male, age 53, unknown 39.7
2298 Female, age 72, unknown 35.2
2047 Male, age 72, unknown 30.4
Inferior colliculus
nTPM: 41.6
2849 Male, age 72, unknown 47.5
1890 Male, age 53, unknown 42.8
1848 Female, age 42, unknown 40.8
2097 Female, age 72, unknown 35.3
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Periaquaductal grey, anterior
nTPM: 37.4
2502 Female, age 75, unknown 41.3
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 34.4
Periaquaductal grey, dorsal
nTPM: 44.5
1831 Male, age 72, unknown 51.1
2850 Male, age 76, both hemispheres 49.6
1840 Male, age 53, unknown 39.5
2464 Female, age 72, unknown 38.0
Periaquaductal grey, lateral
nTPM: 45.6
2140 Male, age 76, both hemispheres 48.0
2272 Male, age 74, both hemispheres 46.6
2053 Male, age 18, unknown 42.2
Pretectal area
nTPM: 44.7
2667 Female, age 75, unknown 57.0
2316 Male, age 76, right hemisphere 55.6
2407 Male, age 75, both hemispheres 55.4
2273 Male, age 74, both hemispheres 53.5
1815 Male, age 53, unknown 46.3
2825 Male, age 18, unknown 46.0
1817 Female, age 42, unknown 42.2
2007 Male, age 72, unknown 38.1
2224 Female, age 72, unknown 37.0
1944 Female, age 72, unknown 32.2
1816 Male, age 51, unknown 28.0
Red nucleus
nTPM: 54.2
1865 Male, age 51, unknown 68.4
1904 Male, age 53, unknown 65.3
2785 Male, age 18, unknown 62.2
1821 Female, age 72, unknown 59.8
2769 Male, age 72, unknown 57.7
2227 Male, age 72, unknown 57.6
2823 Male, age 76, right hemisphere 52.2
1954 Female, age 42, unknown 51.6
2503 Female, age 72, unknown 51.4
2584 Male, age 75, left hemisphere 46.2
2588 Male, age 74, left hemisphere 43.6
2725 Female, age 75, unknown 34.1
Substantia nigra
nTPM: 48.7
2409 Female, age 72, unknown 64.5
2699 Male, age 18, unknown 62.1
1851 Male, age 51, unknown 57.0
1889 Female, age 72, unknown 50.1
2583 Male, age 75, right hemisphere 47.7
1916 Female, age 42, unknown 43.0
2241 Male, age 72, unknown 40.9
1941 Male, age 53, unknown 40.8
2590 Female, age 75, unknown 40.7
2665 Male, age 74, both hemispheres 40.2
Superior colliculus
nTPM: 51.0
1995 Male, age 72, unknown 71.7
1913 Female, age 42, unknown 68.7
2668 Female, age 75, unknown 62.6
1895 Male, age 76, right hemisphere 52.4
1839 Male, age 51, unknown 52.3
2587 Male, age 74, left hemisphere 51.9
1796 Male, age 53, unknown 44.3
2664 Male, age 75, both hemispheres 39.7
2087 Female, age 72, unknown 35.2
2261 Male, age 18, unknown 31.1
Ventral tegmental area
nTPM: 48.5
2410 Female, age 72, unknown 55.1
2223 Female, age 72, unknown 52.5
1915 Female, age 42, unknown 48.8
2218 Male, age 76, both hemispheres 47.2
2021 Male, age 53, unknown 47.0
1942 Male, age 51, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 43.1
Min nTPM: 6.5
Std nTPM: 5.8
Median nTPM: 13.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 32.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 31.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 28.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 25.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 25.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 237.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.1
FF:10158-103A5 76 years, female 237.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 37.1
Min nTPM: 24.6
Sample A Female 27.9
Sample B Female 24.6
Sample C Male 30.6
Sample D Male 37.1
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 55.9
Min nTPM: 25.1
Sample A Female 55.9
Sample B Female 26.5
Sample C Male 28.5
Sample D Male 25.1
Periaqueductal gray
nTPM: 34.7
Samples: 3

Max nTPM: 39.2
Min nTPM: 32.2
Sample B Female 32.7
Sample C Male 32.2
Sample D Male 39.2
Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 34.5
Min nTPM: 17.3
Sample A Female 22.8
Sample B Female 17.3
Sample C Male 28.6
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.4
Sample A Male 16.4
Sample B Male 18.2
Sample C Female 19.4
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73521809 Antisense, RP_051101_03_A08, Mouse strain C57BL/6J (56 days, male) 0.2
69816984 Antisense, RP_050510_02_D05, Mouse strain C57BL/6J (56 days, male) 0.0

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