HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:63.5 nTPM
GTEx:15.7 nTPM
FANTOM5:130.0 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:26.7 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 63.5
Sample id Sample description nTPM
Hippocampus
nTPM: 37.7
2529 Female, age 94, left hemisphere 49.2
1911 Female, age 85, right hemisphere 42.9
2148 Female, age 91, left hemisphere 35.9
1898 Male, age 80, left hemisphere 34.1
2621 Female, age 67, right hemisphere 33.9
1855 Male, age 76, left hemisphere 30.4
Dentate gyrus
nTPM: 36.2
2530 Female, age 94, left hemisphere 53.6
2528 Male, age 74, both hemispheres 35.8
1927 Female, age 91, both hemispheres 34.6
2246 Female, age 85, both hemispheres 34.4
2010 Male, age 76, both hemispheres 30.8
2531 Female, age 67, both hemispheres 28.0
Entorhinal gyrus
nTPM: 63.5
1938 Female, age 85, left hemisphere 91.0
2613 Female, age 94, left hemisphere 74.7
2764 Male, age 80, right hemisphere 64.1
1787 Male, age 76, left hemisphere 60.1
2117 Female, age 91, right hemisphere 50.3
2686 Male, age 75, right hemisphere 40.9
Hippocampus, CA1
nTPM: 30.2
1873 Female, age 85, both hemispheres 38.9
2082 Female, age 91, right hemisphere 33.9
2527 Male, age 74, both hemispheres 29.3
2045 Male, age 76, both hemispheres 28.9
2749 Male, age 80, left hemisphere 20.1
Hippocampus, CA2
nTPM: 35.2
2437 Female, age 94, left hemisphere 42.5
2249 Male, age 74, both hemispheres 37.0
2113 Female, age 91, right hemisphere 36.1
1892 Male, age 76, both hemispheres 33.8
1963 Male, age 80, left hemisphere 33.4
1940 Female, age 85, left hemisphere 28.4
Hippocampus, CA3
nTPM: 35.4
1891 Female, age 85, both hemispheres 56.1
1867 Male, age 76, both hemispheres 46.0
2436 Male, age 74, both hemispheres 32.0
2620 Female, age 94, left hemisphere 26.4
2861 Female, age 67, both hemispheres 26.2
2137 Male, age 80, left hemisphere 25.9
Parahippocampal cortex
nTPM: 43.7
1990 Female, age 91, right hemisphere 68.9
1850 Male, age 80, both hemispheres 60.7
2692 Male, age 74, both hemispheres 56.8
2532 Female, age 72, left hemisphere 52.2
1933 Female, age 85, both hemispheres 46.0
2622 Female, age 67, right hemisphere 32.6
2018 Male, age 76, both hemispheres 31.6
2250 Female, age 67, right hemisphere 30.4
2693 Female, age 94, both hemispheres 29.0
2245 Female, age 91, both hemispheres 28.4
Perirhinal gyrus
nTPM: 43.2
1847 Female, age 91, left hemisphere 59.1
2848 Male, age 76, right hemisphere 45.3
1841 Female, age 85, right hemisphere 43.3
1794 Male, age 80, right hemisphere 39.9
2521 Female, age 94, right hemisphere 28.2
Subiculum
nTPM: 54.1
1977 Female, age 85, both hemispheres 72.0
2438 Female, age 94, left hemisphere 60.6
2042 Male, age 76, both hemispheres 58.7
1901 Male, age 80, both hemispheres 56.9
2619 Male, age 74, both hemispheres 44.2
2729 Female, age 91, right hemisphere 31.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 15.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.7
Samples: 197

Max nTPM: 49.1
Min nTPM: 5.5
Std nTPM: 6.4
Median nTPM: 14.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 49.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 37.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 32.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 30.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 30.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 29.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 29.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 29.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 29.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 29.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 28.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 130.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 130.0
FF:10153-102I9 76 years, female 132.4
FF:10169-103B7 60 years, female 127.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 22.9
Pig sample Sample description nTPM
Subiculum
nTPM: 22.9
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.0
Sample A Female 25.3
Sample B Female 24.0
Sample C Male 21.3
Sample D Male 21.0
Dorsal hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 30.7
Min nTPM: 11.9
Sample A Female 22.1
Sample B Female 14.7
Sample C Male 30.7
Sample D Male 11.9
Entorhinal cortex
nTPM: 19.4
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.4
Sample A Female 17.4
Sample B Female 19.9
Sample C Male 18.1
Sample D Male 22.1
Ventral hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 23.8
Min nTPM: 14.8
Sample A Female 21.7
Sample B Female 14.8
Sample C Male 23.8
Sample D Male 19.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 26.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.7
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.5
Sample A Male 26.5
Sample B Male 25.5
Sample C Female 27.6
Sample D Female 27.3
Hippocampal formation
nTPM: 22.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 21.7
Sample A Male 22.5
Sample B Male 24.2
Sample C Female 21.7
Sample D Female 23.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
73521809 Antisense, RP_051101_03_A08, Mouse strain C57BL/6J (56 days, male) 1.9
69816984 Antisense, RP_050510_02_D05, Mouse strain C57BL/6J (56 days, male) 1.7

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