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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPIN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPIN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.3
497
Tumor
1.3
695
Tumor
1.2
743
Tumor
1.2
921
Tumor
1.1
545
Tumor
1.1
463
Tumor
1.0
1031
Tumor
1.0
517
Tumor
0.9
1013
Tumor
0.9
967
Tumor
0.8
351
Tumor
0.8
817
Tumor
0.8
877
Tumor
0.8
285
Tumor
0.6
943
Tumor
0.6
671
Tumor
0.6
647
Tumor
0.6
641
Tumor
0.6
983
Tumor
0.6
161
Tumor
0.6
957
Tumor
0.6
413
Tumor
0.6
425
Tumor
0.6
537
Tumor
0.5
411
Tumor
0.5
727
Tumor
0.5
487
Tumor
0.5
881
Tumor
0.5
963
Tumor
0.5
271
Tumor
0.5
777
Tumor
0.5
435
Tumor
0.5
393
Tumor
0.5
483
Tumor
0.5
923
Tumor
0.5
385
Tumor
0.4
975
Tumor
0.4
661
Tumor
0.4
737
Tumor
0.4
313
Tumor
0.4
815
Tumor
0.4
1025
Tumor
0.3
498
Normal
0.3
455
Tumor
0.3
461
Tumor
0.3
427
Tumor
0.3
444
Normal
0.3
917
Tumor
0.3
491
Tumor
0.3
492
Normal
0.3
953
Tumor
0.3
852
Normal
0.3
343
Tumor
0.3
357
Tumor
0.3
635
Tumor
0.3
364
Normal
0.2
851
Tumor
0.2
465
Tumor
0.2
515
Tumor
0.2
865
Tumor
0.2
863
Tumor
0.2
524
Normal
0.2
341
Tumor
0.2
283
Tumor
0.2
951
Tumor
0.2
514
Normal
0.2
493
Tumor
0.2
123
Tumor
0.2
355
Tumor
0.2
125
Tumor
0.2
328
Normal
0.2
573
Tumor
0.2
715
Tumor
0.2
937
Tumor
0.2
467
Tumor
0.2
227
Tumor
0.2
721
Tumor
0.2
698
Normal
0.2
857
Tumor
0.2
192
Normal
0.2
365
Tumor
0.2
563
Tumor
0.1
516
Normal
0.1
1014
Normal
0.1
494
Normal
0.1
482
Normal
0.1
297
Tumor
0.1
553
Tumor
0.1
533
Tumor
0.1
211
Tumor
0.1
472
Normal
0.1
786
Normal
0.1
223
Tumor
0.1
477
Tumor
0.1
481
Tumor
0.1
488
Normal
0.1
416
Normal
0.1
814
Normal
0.1
713
Tumor
0.1
813
Tumor
0.1
564
Normal
0.1
214
Normal
0.1
663
Tumor
0.1
916
Normal
0.1
196
Normal
0.1
447
Tumor
0.1
191
Tumor
0.1
536
Normal
0.0
217
Tumor
0.0
415
Tumor
0.0
964
Normal
0.0
221
Tumor
0.0
423
Tumor
0.0
356
Normal
0.0
958
Normal
0.0
212
Normal
0.0
873
Tumor
0.0
171
Tumor
0.0
375
Tumor
0.0
224
Normal
0.0
354
Normal
0.0
984
Normal
0.0
785
Tumor
0.0
327
Tumor
0.0
384
Normal
0.0
978
Normal
0.0
448
Normal
0.0
574
Normal
0.0
284
Normal
0.0
1046
Normal
0.0
187
Tumor
0.0
352
Normal
0.0
286
Normal
0.0
386
Normal
0.0
342
Normal
0.0
426
Normal
0.0
976
Normal
0.0
546
Normal
0.0
724
Normal
0.0
218
Normal
0.0
141
Tumor
0.0
478
Normal
0.0
968
Normal
0.0
376
Normal
0.0
534
Normal
0.0
135
Tumor
0.0
484
Normal
0.0
112
Tumor
-0.1
884
Normal
-0.1
538
Normal
-0.1
954
Normal
-0.1
572
Normal
-0.1
433
Tumor
-0.1
756
Normal
-0.1
977
Tumor
-0.1
268
Normal
-0.1
755
Tumor
-0.1
412
Normal
-0.1
127
Tumor
-0.1
554
Normal
-0.1
383
Tumor
-0.1
185
Tumor
-0.1
816
Normal
-0.1
394
Normal
-0.1
742
Normal
-0.1
462
Normal
-0.1
864
Normal
-0.1
874
Normal
-0.1
966
Normal
-0.1
722
Normal
-0.1
1015
Tumor
-0.1
672
Normal
-0.1
421
Tumor
-0.1
924
Normal
-0.1
162
Normal
-0.1
344
Normal
-0.1
956
Normal
-0.1
363
Tumor
-0.1
883
Tumor
-0.1
912
Normal
-0.1
518
Normal
-0.1
114
Normal
-0.1
124
Normal
-0.1
188
Normal
-0.1
388
Normal
-0.1
443
Tumor
-0.1
558
Normal
-0.1
147
Tumor
-0.1
728
Normal
-0.1
222
Normal
-0.1
228
Normal
-0.1
1016
Normal
-0.1
213
Tumor
-0.1
314
Normal
-0.1
396
Normal
-0.1
818
Normal
-0.1
882
Normal
-0.1
527
Tumor
-0.1
918
Normal
-0.1
358
Normal
-0.1
627
Tumor
-0.1
938
Normal
-0.1
952
Normal
-0.2
982
Normal
-0.2
738
Normal
-0.2
664
Normal
-0.2
414
Normal
-0.2
513
Tumor
-0.2
434
Normal
-0.2
113
Tumor
-0.2
526
Normal
-0.2
362
Normal
-0.2
744
Normal
-0.2
824
Normal
-0.2
528
Normal
-0.2
716
Normal
-0.2
1032
Normal
-0.2
1045
Tumor
-0.2
567
Tumor
-0.2
468
Normal
-0.2
464
Normal
-0.2
666
Normal
-0.2
944
Normal
-0.2
267
Tumor
-0.2
126
Normal
-0.2
331
Tumor
-0.2
456
Normal
-0.2
714
Normal
-0.2
862
Normal
-0.2
366
Normal
-0.2
955
Tumor
-0.2
913
Tumor
-0.2
823
Tumor
-0.2
868
Normal
-0.2
391
Tumor
-0.2
636
Normal
-0.2
395
Tumor
-0.2
525
Tumor
-0.2
353
Tumor
-0.2
367
Tumor
-0.2
926
Normal
-0.2
981
Tumor
-0.2
571
Tumor
-0.2
615
Tumor
-0.2
128
Normal
-0.2
1021
Tumor
-0.2
422
Normal
-0.2
878
Normal
-0.2
686
Normal
-0.2
628
Normal
-0.2
1028
Normal
-0.2
111
Normal
-0.2
272
Normal
-0.2
617
Tumor
-0.2
914
Normal
-0.2
662
Normal
-0.2
392
Normal
-0.2
858
Normal
-0.3
311
Tumor
-0.3
741
Tumor
-0.3
557
Tumor
-0.3
428
Normal
-0.3
618
Normal
-0.3
131
Tumor
-0.3
361
Tumor
-0.3
172
Normal
-0.3
148
Normal
-0.3
312
Normal
-0.3
568
Normal
-0.3
195
Tumor
-0.3
257
Tumor
-0.3
866
Normal
-0.3
277
Tumor
-0.3
1027
Tumor
-0.3
1044
Normal
-0.3
424
Normal
-0.3
445
Tumor
-0.3
696
Normal
-0.3
1043
Tumor
-0.3
778
Normal
-0.3
616
Normal
-0.3
466
Normal
-0.3
432
Normal
-0.3
922
Normal
-0.3
965
Tumor
-0.3
137
Tumor
-0.3
665
Tumor
-0.3
258
Normal
-0.3
925
Tumor
-0.3
332
Normal
-0.3
436
Normal
-0.3
723
Tumor
-0.4
471
Tumor
-0.4
746
Normal
-0.4
138
Normal
-0.4
186
Normal
-0.4
298
Normal
-0.4
535
Tumor
-0.4
648
Normal
-0.4
642
Normal
-0.4
745
Tumor
-0.4
136
Normal
-0.4
368
Normal
-0.4
1042
Normal
-0.4
431
Tumor
-0.4
261
Tumor
-0.4
446
Normal
-0.4
685
Tumor
-0.4
262
Normal
-0.4
146
Normal
-0.4
232
Normal
-0.5
1022
Normal
-0.5
387
Tumor
-0.5
861
Tumor
-0.5
1026
Normal
-0.5
451
Tumor
-0.5
452
Normal
-0.5
278
Normal
-0.5
867
Tumor
-0.6
145
Tumor
-0.6
915
Tumor
-0.6
142
Normal
-0.7
231
Tumor
-0.7
697
Tumor
-0.7
911
Tumor
-0.8
1041
Tumor
-0.9
473
Tumor
-1.1
474
Normal
-1.3
132
Normal
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
