MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:177.2 nTPM
HPA Brain:184.7 nTPM
GTEx:177.2 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Pig:249.9 nTPM
Mouse:191.0 nTPM
Allen mouse:15.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 184.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 179.8
2586 Male, age 75, left hemisphere 219.8
2019 Male, age 18, unknown 205.2
2666 Male, age 74, left hemisphere 195.5
2411 Female, age 72, unknown 191.7
1827 Male, age 72, unknown 185.7
1870 Female, age 42, unknown 180.7
2828 Female, age 72, unknown 177.3
1830 Male, age 51, unknown 164.2
1833 Male, age 53, unknown 158.0
2219 Male, age 76, both hemispheres 119.8
Dorsal raphe nucleus
nTPM: 162.8
2298 Female, age 72, unknown 172.1
2750 Male, age 76, both hemispheres 169.7
1828 Male, age 53, unknown 166.3
2016 Female, age 72, unknown 153.1
2047 Male, age 72, unknown 152.8
Inferior colliculus
nTPM: 162.9
2097 Female, age 72, unknown 176.8
1848 Female, age 42, unknown 163.3
1890 Male, age 53, unknown 157.4
2849 Male, age 72, unknown 154.2
Median raphe nucleus
nTPM: 141.3
2220 Male, age 76, midline 141.3
Periaquaductal grey, anterior
nTPM: 165.1
2502 Female, age 75, unknown 170.2
1795 Male, age 51, unknown 165.0
1947 Male, age 18, unknown 160.1
Periaquaductal grey, dorsal
nTPM: 145.6
1840 Male, age 53, unknown 155.5
1831 Male, age 72, unknown 150.4
2464 Female, age 72, unknown 144.0
2850 Male, age 76, both hemispheres 132.4
Periaquaductal grey, lateral
nTPM: 141.0
2053 Male, age 18, unknown 147.1
2140 Male, age 76, both hemispheres 141.9
2272 Male, age 74, both hemispheres 133.9
Pretectal area
nTPM: 172.9
2007 Male, age 72, unknown 207.8
1817 Female, age 42, unknown 203.9
1816 Male, age 51, unknown 202.5
1815 Male, age 53, unknown 192.1
1944 Female, age 72, unknown 173.7
2667 Female, age 75, unknown 163.7
2825 Male, age 18, unknown 160.4
2407 Male, age 75, both hemispheres 157.0
2273 Male, age 74, both hemispheres 149.9
2316 Male, age 76, right hemisphere 148.0
2224 Female, age 72, unknown 143.4
Red nucleus
nTPM: 184.7
1821 Female, age 72, unknown 215.7
2588 Male, age 74, left hemisphere 201.8
2785 Male, age 18, unknown 193.5
1865 Male, age 51, unknown 186.2
2584 Male, age 75, left hemisphere 185.6
1954 Female, age 42, unknown 183.8
1904 Male, age 53, unknown 182.1
2769 Male, age 72, unknown 180.6
2227 Male, age 72, unknown 179.8
2503 Female, age 72, unknown 174.6
2823 Male, age 76, right hemisphere 167.9
2725 Female, age 75, unknown 165.2
Substantia nigra
nTPM: 172.3
2583 Male, age 75, right hemisphere 195.1
1889 Female, age 72, unknown 189.6
1916 Female, age 42, unknown 184.2
1851 Male, age 51, unknown 181.2
2665 Male, age 74, both hemispheres 180.8
2590 Female, age 75, unknown 179.3
1941 Male, age 53, unknown 176.2
2241 Male, age 72, unknown 156.7
2699 Male, age 18, unknown 140.5
2409 Female, age 72, unknown 139.7
Superior colliculus
nTPM: 174.0
2664 Male, age 75, both hemispheres 191.1
2668 Female, age 75, unknown 188.0
2261 Male, age 18, unknown 183.9
2087 Female, age 72, unknown 172.3
1796 Male, age 53, unknown 171.5
1895 Male, age 76, right hemisphere 170.3
1995 Male, age 72, unknown 169.9
1913 Female, age 42, unknown 169.0
2587 Male, age 74, left hemisphere 163.5
1839 Male, age 51, unknown 160.1
Ventral tegmental area
nTPM: 163.1
2410 Female, age 72, unknown 185.1
2223 Female, age 72, unknown 184.0
1915 Female, age 42, unknown 165.9
2021 Male, age 53, unknown 153.2
1942 Male, age 51, unknown 150.9
2218 Male, age 76, both hemispheres 139.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 177.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 177.2
Samples: 139

Max nTPM: 273.6
Min nTPM: 137.5
Std nTPM: 25.7
Median nTPM: 172.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 273.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 270.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 248.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 245.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 230.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 225.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 223.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 222.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 220.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 218.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 216.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.7
FF:10158-103A5 76 years, female 92.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 249.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 214.6
Samples: 4

Max nTPM: 252.8
Min nTPM: 180.3
Sample A Female 252.8
Sample B Female 180.3
Sample C Male 216.8
Sample D Male 208.3
Midbrain
nTPM: 249.9
Samples: 4

Max nTPM: 332.3
Min nTPM: 215.7
Sample A Female 332.3
Sample B Female 215.7
Sample C Male 232.7
Sample D Male 218.9
Periaqueductal gray
nTPM: 199.4
Samples: 3

Max nTPM: 214.5
Min nTPM: 183.8
Sample B Female 200.0
Sample C Male 214.5
Sample D Male 183.8
Superior colliculi
nTPM: 236.6
Samples: 4

Max nTPM: 271.9
Min nTPM: 188.0
Sample A Female 271.9
Sample B Female 188.0
Sample C Male 254.8
Sample D Male 231.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 191.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 191.0
Samples: 4

Max nTPM: 196.7
Min nTPM: 184.9
Sample A Male 196.7
Sample B Male 186.1
Sample C Female 196.3
Sample D Female 184.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.8
513227 Antisense, RP_040810_01_C03, Mouse strain C57BL/6J (56 days, male) 15.8

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