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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
187.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
119.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
101.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
83.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
70.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
67.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
66.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
66.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
64.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
58.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
56.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
52.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
52.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
51.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
44.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
32.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
125.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
117.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
66.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
37.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
1.3
313
Tumor
1.2
647
Tumor
1.2
814
Normal
1.1
573
Tumor
1.1
277
Tumor
1.1
813
Tumor
1.0
983
Tumor
1.0
661
Tumor
0.9
1013
Tumor
0.9
724
Normal
0.9
545
Tumor
0.9
283
Tumor
0.9
391
Tumor
0.9
671
Tumor
0.9
951
Tumor
0.8
267
Tumor
0.8
297
Tumor
0.8
311
Tumor
0.7
537
Tumor
0.7
815
Tumor
0.7
447
Tumor
0.6
161
Tumor
0.6
465
Tumor
0.6
977
Tumor
0.6
385
Tumor
0.6
865
Tumor
0.6
527
Tumor
0.6
331
Tumor
0.6
367
Tumor
0.6
627
Tumor
0.6
387
Tumor
0.6
375
Tumor
0.6
351
Tumor
0.6
965
Tumor
0.6
737
Tumor
0.6
221
Tumor
0.6
411
Tumor
0.6
285
Tumor
0.6
513
Tumor
0.5
125
Tumor
0.5
383
Tumor
0.5
213
Tumor
0.5
171
Tumor
0.5
881
Tumor
0.4
535
Tumor
0.4
953
Tumor
0.4
635
Tumor
0.4
357
Tumor
0.4
743
Tumor
0.4
497
Tumor
0.4
615
Tumor
0.4
211
Tumor
0.4
141
Tumor
0.4
127
Tumor
0.4
745
Tumor
0.4
491
Tumor
0.4
957
Tumor
0.4
455
Tumor
0.3
685
Tumor
0.3
353
Tumor
0.3
777
Tumor
0.3
785
Tumor
0.3
223
Tumor
0.3
663
Tumor
0.3
563
Tumor
0.3
147
Tumor
0.3
913
Tumor
0.3
227
Tumor
0.3
1043
Tumor
0.3
851
Tumor
0.3
187
Tumor
0.3
877
Tumor
0.3
487
Tumor
0.3
967
Tumor
0.2
943
Tumor
0.2
217
Tumor
0.2
365
Tumor
0.2
341
Tumor
0.2
361
Tumor
0.2
434
Normal
0.2
444
Normal
0.2
641
Tumor
0.2
536
Normal
0.2
137
Tumor
0.2
332
Normal
0.2
312
Normal
0.2
467
Tumor
0.2
433
Tumor
0.2
126
Normal
0.2
271
Tumor
0.2
567
Tumor
0.2
523
Tumor
0.2
431
Tumor
0.2
355
Tumor
0.2
481
Tumor
0.2
697
Tumor
0.2
1021
Tumor
0.1
188
Normal
0.1
493
Tumor
0.1
483
Tumor
0.1
185
Tumor
0.1
727
Tumor
0.1
366
Normal
0.1
314
Normal
0.1
443
Tumor
0.1
817
Tumor
0.1
975
Tumor
0.1
445
Tumor
0.1
278
Normal
0.1
451
Tumor
0.1
482
Normal
0.1
861
Tumor
0.1
937
Tumor
0.1
665
Tumor
0.1
553
Tumor
0.1
914
Normal
0.1
113
Tumor
0.1
231
Tumor
0.1
533
Tumor
0.0
525
Tumor
0.0
863
Tumor
0.0
191
Tumor
0.0
713
Tumor
0.0
461
Tumor
0.0
1015
Tumor
0.0
192
Normal
0.0
921
Tumor
0.0
1045
Tumor
0.0
386
Normal
0.0
257
Tumor
0.0
131
Tumor
0.0
363
Tumor
0.0
857
Tumor
0.0
146
Normal
0.0
224
Normal
0.0
492
Normal
0.0
195
Tumor
0.0
873
Tumor
0.0
284
Normal
0.0
354
Normal
-0.1
145
Tumor
-0.1
427
Tumor
-0.1
298
Normal
-0.1
362
Normal
-0.1
112
Tumor
-0.1
741
Tumor
-0.1
136
Normal
-0.1
384
Normal
-0.1
114
Normal
-0.1
393
Tumor
-0.1
515
Tumor
-0.1
1031
Tumor
-0.1
286
Normal
-0.1
212
Normal
-0.1
571
Tumor
-0.2
135
Tumor
-0.2
128
Normal
-0.2
662
Normal
-0.2
111
Normal
-0.2
352
Normal
-0.2
617
Tumor
-0.2
396
Normal
-0.2
358
Normal
-0.2
517
Tumor
-0.2
755
Tumor
-0.2
138
Normal
-0.2
823
Tumor
-0.2
456
Normal
-0.2
124
Normal
-0.2
473
Tumor
-0.2
978
Normal
-0.2
415
Tumor
-0.2
462
Normal
-0.2
672
Normal
-0.3
395
Tumor
-0.3
394
Normal
-0.3
328
Normal
-0.3
966
Normal
-0.3
425
Tumor
-0.3
738
Normal
-0.3
388
Normal
-0.3
963
Tumor
-0.3
468
Normal
-0.3
368
Normal
-0.3
342
Normal
-0.3
477
Tumor
-0.3
423
Tumor
-0.3
471
Tumor
-0.3
344
Normal
-0.3
413
Tumor
-0.3
262
Normal
-0.3
1016
Normal
-0.3
514
Normal
-0.3
428
Normal
-0.3
446
Normal
-0.3
416
Normal
-0.3
474
Normal
-0.3
123
Tumor
-0.3
852
Normal
-0.3
268
Normal
-0.3
984
Normal
-0.3
923
Tumor
-0.3
364
Normal
-0.3
196
Normal
-0.3
742
Normal
-0.3
744
Normal
-0.3
261
Tumor
-0.3
628
Normal
-0.3
228
Normal
-0.4
432
Normal
-0.4
666
Normal
-0.4
1027
Tumor
-0.4
392
Normal
-0.4
664
Normal
-0.4
721
Tumor
-0.4
728
Normal
-0.4
616
Normal
-0.4
557
Tumor
-0.4
723
Tumor
-0.4
472
Normal
-0.4
648
Normal
-0.4
421
Tumor
-0.4
356
Normal
-0.4
466
Normal
-0.4
883
Tumor
-0.4
925
Tumor
-0.4
222
Normal
-0.4
695
Tumor
-0.4
478
Normal
-0.4
435
Tumor
-0.4
858
Normal
-0.4
343
Tumor
-0.4
272
Normal
-0.4
162
Normal
-0.4
642
Normal
-0.4
538
Normal
-0.5
376
Normal
-0.5
818
Normal
-0.5
1042
Normal
-0.5
214
Normal
-0.5
516
Normal
-0.5
574
Normal
-0.5
981
Tumor
-0.5
911
Tumor
-0.5
917
Tumor
-0.5
534
Normal
-0.5
412
Normal
-0.5
172
Normal
-0.5
618
Normal
-0.5
524
Normal
-0.5
874
Normal
-0.6
327
Tumor
-0.6
186
Normal
-0.6
884
Normal
-0.6
464
Normal
-0.6
528
Normal
-0.6
132
Normal
-0.6
867
Tumor
-0.6
824
Normal
-0.6
422
Normal
-0.6
436
Normal
-0.6
494
Normal
-0.6
498
Normal
-0.6
1044
Normal
-0.6
1014
Normal
-0.6
1032
Normal
-0.6
142
Normal
-0.6
1041
Tumor
-0.6
484
Normal
-0.6
636
Normal
-0.6
715
Tumor
-0.6
976
Normal
-0.6
816
Normal
-0.6
558
Normal
-0.6
982
Normal
-0.6
756
Normal
-0.6
424
Normal
-0.7
882
Normal
-0.7
716
Normal
-0.7
148
Normal
-0.7
944
Normal
-0.7
868
Normal
-0.7
518
Normal
-0.7
862
Normal
-0.7
722
Normal
-0.7
258
Normal
-0.7
572
Normal
-0.7
778
Normal
-0.7
952
Normal
-0.7
1022
Normal
-0.7
956
Normal
-0.7
452
Normal
-0.7
746
Normal
-0.7
526
Normal
-0.7
218
Normal
-0.7
786
Normal
-0.7
878
Normal
-0.8
554
Normal
-0.8
1046
Normal
-0.8
866
Normal
-0.8
912
Normal
-0.8
546
Normal
-0.8
938
Normal
-0.8
426
Normal
-0.8
958
Normal
-0.8
488
Normal
-0.8
1026
Normal
-0.8
864
Normal
-0.9
686
Normal
-0.9
564
Normal
-0.9
954
Normal
-0.9
955
Tumor
-0.9
714
Normal
-0.9
568
Normal
-0.9
232
Normal
-0.9
964
Normal
-0.9
1025
Tumor
-0.9
924
Normal
-0.9
968
Normal
-1.0
916
Normal
-1.0
414
Normal
-1.0
918
Normal
-1.1
696
Normal
-1.1
915
Tumor
-1.1
926
Normal
-1.1
1028
Normal
-1.1
922
Normal
-1.4
448
Normal
-2.2
698
Normal
-4.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
