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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDAP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
101.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
65.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
65.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
54.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
32.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
25.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDAP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.6
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
393.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
109.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
89.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
82.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
74.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
70.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
67.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
65.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
64.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
64.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
55.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
55.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
54.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
50.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
44.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
43.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
42.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.7
473
Tumor
1.1
477
Tumor
1.1
785
Tumor
1.0
387
Tumor
0.9
1013
Tumor
0.9
1021
Tumor
0.8
483
Tumor
0.8
481
Tumor
0.8
743
Tumor
0.8
425
Tumor
0.8
327
Tumor
0.8
537
Tumor
0.7
171
Tumor
0.7
915
Tumor
0.7
957
Tumor
0.7
445
Tumor
0.7
727
Tumor
0.7
965
Tumor
0.7
977
Tumor
0.7
883
Tumor
0.7
351
Tumor
0.7
983
Tumor
0.6
911
Tumor
0.6
1031
Tumor
0.6
963
Tumor
0.6
131
Tumor
0.6
635
Tumor
0.6
431
Tumor
0.6
1025
Tumor
0.5
411
Tumor
0.5
615
Tumor
0.5
925
Tumor
0.5
375
Tumor
0.5
755
Tumor
0.5
695
Tumor
0.5
493
Tumor
0.5
285
Tumor
0.5
527
Tumor
0.5
851
Tumor
0.5
777
Tumor
0.5
737
Tumor
0.5
1041
Tumor
0.5
745
Tumor
0.5
951
Tumor
0.4
435
Tumor
0.4
137
Tumor
0.4
211
Tumor
0.4
535
Tumor
0.4
443
Tumor
0.4
471
Tumor
0.4
365
Tumor
0.4
517
Tumor
0.4
647
Tumor
0.4
1043
Tumor
0.4
515
Tumor
0.4
523
Tumor
0.4
865
Tumor
0.4
533
Tumor
0.4
1015
Tumor
0.4
861
Tumor
0.4
257
Tumor
0.4
981
Tumor
0.4
1027
Tumor
0.4
563
Tumor
0.3
867
Tumor
0.3
953
Tumor
0.3
881
Tumor
0.3
385
Tumor
0.3
231
Tumor
0.3
697
Tumor
0.3
1045
Tumor
0.3
455
Tumor
0.3
567
Tumor
0.3
913
Tumor
0.3
513
Tumor
0.3
484
Normal
0.3
741
Tumor
0.3
665
Tumor
0.3
937
Tumor
0.3
715
Tumor
0.3
355
Tumor
0.3
415
Tumor
0.3
573
Tumor
0.2
363
Tumor
0.2
261
Tumor
0.2
465
Tumor
0.2
497
Tumor
0.2
714
Normal
0.2
975
Tumor
0.2
923
Tumor
0.2
671
Tumor
0.2
958
Normal
0.2
313
Tumor
0.2
545
Tumor
0.2
661
Tumor
0.2
487
Tumor
0.2
283
Tumor
0.2
815
Tumor
0.2
447
Tumor
0.2
498
Normal
0.2
331
Tumor
0.2
478
Normal
0.2
297
Tumor
0.2
223
Tumor
0.2
353
Tumor
0.2
516
Normal
0.2
536
Normal
0.2
984
Normal
0.2
271
Tumor
0.2
492
Normal
0.1
721
Tumor
0.1
966
Normal
0.1
554
Normal
0.1
195
Tumor
0.1
924
Normal
0.1
1022
Normal
0.1
724
Normal
0.1
553
Tumor
0.1
1028
Normal
0.1
968
Normal
0.1
488
Normal
0.1
1014
Normal
0.1
267
Tumor
0.1
284
Normal
0.1
964
Normal
0.1
127
Tumor
0.1
852
Normal
0.1
878
Normal
0.1
221
Tumor
0.1
916
Normal
0.1
873
Tumor
0.1
147
Tumor
0.1
863
Tumor
0.1
494
Normal
0.1
135
Tumor
0.1
696
Normal
0.1
698
Normal
0.1
955
Tumor
0.0
716
Normal
0.0
361
Tumor
0.0
922
Normal
0.0
538
Normal
0.0
918
Normal
0.0
952
Normal
0.0
864
Normal
0.0
474
Normal
0.0
912
Normal
0.0
571
Tumor
0.0
778
Normal
0.0
413
Tumor
0.0
978
Normal
0.0
943
Tumor
0.0
938
Normal
0.0
917
Tumor
0.0
921
Tumor
0.0
367
Tumor
0.0
528
Normal
0.0
954
Normal
0.0
461
Tumor
0.0
412
Normal
0.0
746
Normal
0.0
357
Tumor
0.0
525
Tumor
0.0
557
Tumor
0.0
884
Normal
0.0
341
Tumor
0.0
723
Tumor
0.0
882
Normal
0.0
786
Normal
0.0
524
Normal
0.0
1032
Normal
0.0
686
Normal
0.0
546
Normal
0.0
421
Tumor
0.0
558
Normal
0.0
311
Tumor
0.0
213
Tumor
0.0
857
Tumor
0.0
866
Normal
0.0
433
Tumor
0.0
982
Normal
0.0
228
Normal
0.0
1044
Normal
0.0
1042
Normal
0.0
572
Normal
0.0
514
Normal
0.0
728
Normal
0.0
823
Tumor
0.0
862
Normal
0.0
756
Normal
0.0
448
Normal
-0.1
286
Normal
-0.1
534
Normal
-0.1
526
Normal
-0.1
462
Normal
-0.1
944
Normal
-0.1
1026
Normal
-0.1
416
Normal
-0.1
393
Tumor
-0.1
472
Normal
-0.1
161
Tumor
-0.1
976
Normal
-0.1
663
Tumor
-0.1
224
Normal
-0.1
463
Tumor
-0.1
518
Normal
-0.1
423
Tumor
-0.1
641
Tumor
-0.1
227
Tumor
-0.1
627
Tumor
-0.1
212
Normal
-0.1
816
Normal
-0.1
328
Normal
-0.1
482
Normal
-0.1
1016
Normal
-0.1
926
Normal
-0.1
617
Tumor
-0.1
722
Normal
-0.1
868
Normal
-0.1
628
Normal
-0.1
364
Normal
-0.1
277
Tumor
-0.1
123
Tumor
-0.1
824
Normal
-0.1
914
Normal
-0.1
956
Normal
-0.1
444
Normal
-0.1
1046
Normal
-0.2
877
Tumor
-0.2
616
Normal
-0.2
744
Normal
-0.2
564
Normal
-0.2
187
Tumor
-0.2
217
Tumor
-0.2
451
Tumor
-0.2
874
Normal
-0.2
362
Normal
-0.2
113
Tumor
-0.2
738
Normal
-0.2
858
Normal
-0.2
574
Normal
-0.2
813
Tumor
-0.2
383
Tumor
-0.2
818
Normal
-0.2
391
Tumor
-0.2
232
Normal
-0.2
386
Normal
-0.2
191
Tumor
-0.2
466
Normal
-0.2
636
Normal
-0.3
125
Tumor
-0.3
568
Normal
-0.3
467
Tumor
-0.3
436
Normal
-0.3
648
Normal
-0.3
185
Tumor
-0.3
814
Normal
-0.3
434
Normal
-0.3
141
Tumor
-0.3
672
Normal
-0.3
446
Normal
-0.3
214
Normal
-0.3
395
Tumor
-0.3
298
Normal
-0.3
366
Normal
-0.3
384
Normal
-0.3
376
Normal
-0.3
343
Tumor
-0.3
196
Normal
-0.3
356
Normal
-0.3
664
Normal
-0.3
222
Normal
-0.3
368
Normal
-0.3
642
Normal
-0.3
268
Normal
-0.4
618
Normal
-0.4
145
Tumor
-0.4
468
Normal
-0.4
456
Normal
-0.4
491
Tumor
-0.4
142
Normal
-0.4
218
Normal
-0.4
713
Tumor
-0.4
685
Tumor
-0.4
662
Normal
-0.4
262
Normal
-0.4
666
Normal
-0.4
742
Normal
-0.4
392
Normal
-0.4
396
Normal
-0.4
344
Normal
-0.4
388
Normal
-0.4
312
Normal
-0.4
452
Normal
-0.4
258
Normal
-0.4
427
Tumor
-0.4
352
Normal
-0.4
394
Normal
-0.4
817
Tumor
-0.4
192
Normal
-0.4
464
Normal
-0.4
272
Normal
-0.4
432
Normal
-0.4
414
Normal
-0.4
132
Normal
-0.5
424
Normal
-0.5
148
Normal
-0.5
138
Normal
-0.5
114
Normal
-0.5
146
Normal
-0.5
128
Normal
-0.5
124
Normal
-0.5
278
Normal
-0.5
428
Normal
-0.5
426
Normal
-0.5
111
Normal
-0.5
354
Normal
-0.6
136
Normal
-0.6
126
Normal
-0.6
422
Normal
-0.6
172
Normal
-0.6
162
Normal
-0.6
112
Tumor
-0.7
332
Normal
-0.7
188
Normal
-0.7
314
Normal
-0.7
358
Normal
-0.7
186
Normal
-0.7
342
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
