HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:29.9 nTPM
GTEx:20.2 nTPM
FANTOM5:97.6 Scaled Tags Per Million
Pig:67.4 nTPM
Mouse:113.5 nTPM
Allen mouse:7.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017896Antibody HPA019097
Glial cells HighMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 29.9
Sample id Sample description nTPM
Hippocampus
nTPM: 15.7
1898 Male, age 80, left hemisphere 26.3
1855 Male, age 76, left hemisphere 19.5
2621 Female, age 67, right hemisphere 14.9
2529 Female, age 94, left hemisphere 13.8
2148 Female, age 91, left hemisphere 10.8
1911 Female, age 85, right hemisphere 8.8
Dentate gyrus
nTPM: 13.1
1927 Female, age 91, both hemispheres 23.4
2010 Male, age 76, both hemispheres 18.0
2246 Female, age 85, both hemispheres 12.2
2530 Female, age 94, left hemisphere 10.4
2528 Male, age 74, both hemispheres 9.6
2531 Female, age 67, both hemispheres 5.2
Entorhinal gyrus
nTPM: 15.2
2764 Male, age 80, right hemisphere 22.8
1938 Female, age 85, left hemisphere 20.6
1787 Male, age 76, left hemisphere 18.2
2613 Female, age 94, left hemisphere 15.5
2686 Male, age 75, right hemisphere 8.1
2117 Female, age 91, right hemisphere 6.1
Hippocampus, CA1
nTPM: 17.6
2749 Male, age 80, left hemisphere 39.8
1873 Female, age 85, both hemispheres 19.0
2045 Male, age 76, both hemispheres 13.0
2527 Male, age 74, both hemispheres 11.4
2082 Female, age 91, right hemisphere 5.0
Hippocampus, CA2
nTPM: 15.7
1892 Male, age 76, both hemispheres 26.2
1963 Male, age 80, left hemisphere 22.1
1940 Female, age 85, left hemisphere 14.9
2249 Male, age 74, both hemispheres 10.7
2437 Female, age 94, left hemisphere 10.5
2113 Female, age 91, right hemisphere 9.6
Hippocampus, CA3
nTPM: 18.4
2436 Male, age 74, both hemispheres 36.5
2137 Male, age 80, left hemisphere 27.0
1867 Male, age 76, both hemispheres 21.6
1891 Female, age 85, both hemispheres 13.2
2620 Female, age 94, left hemisphere 7.2
2861 Female, age 67, both hemispheres 5.1
Parahippocampal cortex
nTPM: 15.8
1850 Male, age 80, both hemispheres 35.4
1990 Female, age 91, right hemisphere 23.0
2250 Female, age 67, right hemisphere 20.4
1933 Female, age 85, both hemispheres 18.7
2693 Female, age 94, both hemispheres 12.9
2018 Male, age 76, both hemispheres 12.5
2245 Female, age 91, both hemispheres 12.4
2692 Male, age 74, both hemispheres 10.8
2532 Female, age 72, left hemisphere 8.3
2622 Female, age 67, right hemisphere 3.9
Perirhinal gyrus
nTPM: 29.9
1847 Female, age 91, left hemisphere 56.8
1794 Male, age 80, right hemisphere 29.9
1841 Female, age 85, right hemisphere 25.6
2521 Female, age 94, right hemisphere 21.8
2848 Male, age 76, right hemisphere 15.2
Subiculum
nTPM: 15.3
2438 Female, age 94, left hemisphere 24.4
1901 Male, age 80, both hemispheres 23.7
1977 Female, age 85, both hemispheres 17.9
2042 Male, age 76, both hemispheres 11.4
2619 Male, age 74, both hemispheres 9.3
2729 Female, age 91, right hemisphere 5.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 20.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.2
Samples: 197

Max nTPM: 56.6
Min nTPM: 6.1
Std nTPM: 9.7
Median nTPM: 17.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 56.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 55.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 43.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 42.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 41.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 41.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 40.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 40.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 39.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 38.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.6
FF:10169-103B7 60 years, female 124.6
FF:10153-102I9 76 years, female 70.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 67.4
Pig sample Sample description nTPM
Subiculum
nTPM: 64.1
Samples: 4

Max nTPM: 78.4
Min nTPM: 58.2
Sample A Female 78.4
Sample B Female 61.1
Sample C Male 58.2
Sample D Male 58.7
Dorsal hippocampus
nTPM: 62.6
Samples: 4

Max nTPM: 81.9
Min nTPM: 44.9
Sample A Female 81.9
Sample B Female 68.9
Sample C Male 54.6
Sample D Male 44.9
Entorhinal cortex
nTPM: 67.5
Samples: 4

Max nTPM: 77.9
Min nTPM: 53.0
Sample A Female 70.6
Sample B Female 77.9
Sample C Male 68.3
Sample D Male 53.0
Ventral hippocampus
nTPM: 63.5
Samples: 4

Max nTPM: 79.1
Min nTPM: 43.3
Sample A Female 79.1
Sample B Female 43.3
Sample C Male 71.1
Sample D Male 60.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 113.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.8
Samples: 4

Max nTPM: 112.1
Min nTPM: 101.9
Sample A Male 101.9
Sample B Male 107.6
Sample C Female 105.6
Sample D Female 112.1
Hippocampal formation
nTPM: 113.5
Samples: 4

Max nTPM: 118.2
Min nTPM: 108.1
Sample A Male 118.2
Sample B Male 108.1
Sample C Female 116.8
Sample D Female 110.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.8
68410297 Antisense, RP_041214_01_F04, Mouse strain C57BL/6J (56 days, male) 15.7
71765010 Antisense, RP_050926_02_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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